Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.33387 * 125.20097 * 90.00187 * 3 2 1 5 5 C 1.38429 * 114.91542 * 179.79615 * 4 3 2 6 6 C 1.33384 * 114.92399 * 0.42576 * 5 4 3 7 7 C 1.50703 * 125.20461 * 179.86134 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47153 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99780 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99793 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00101 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00154 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47418 * 89.99759 * 18 16 14 20 20 H 1.48508 * 109.47382 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47516 * 329.99993 * 18 16 14 22 22 S 1.75882 * 109.59298 * 359.59684 * 6 5 4 23 23 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47089 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47487 * 60.00070 * 1 2 3 26 26 H 1.09007 * 109.47046 * 239.99960 * 2 1 3 27 27 H 1.08998 * 109.47487 * 119.99930 * 2 1 3 28 28 H 1.07991 * 122.54186 * 0.02562 * 4 3 2 29 29 H 1.07996 * 122.53661 * 180.27352 * 5 4 3 30 30 H 1.09002 * 109.47152 * 329.72078 * 7 6 5 31 31 H 1.09001 * 109.46980 * 209.72179 * 7 6 5 32 32 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 33 33 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 34 34 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 35 35 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 36 36 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 37 37 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 38 38 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 39 39 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 41 41 H 1.08995 * 109.47051 * 300.00167 * 13 10 9 42 42 H 1.09003 * 109.46901 * 60.00330 * 13 10 9 43 43 H 0.97005 * 120.00536 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3247 5.0782 -0.9771 8 7 4.7833 5.0485 -1.1493 9 6 5.2787 6.3315 -1.6657 10 6 6.7980 6.2618 -1.8320 11 6 7.4467 5.9728 -0.4768 12 6 7.1527 5.1449 -2.8157 13 6 7.3141 7.5982 -2.3692 14 6 8.8107 7.5298 -2.5325 15 1 9.3407 6.6239 -2.2780 16 6 9.5032 8.6240 -3.0056 17 7 10.8092 8.5642 -3.1485 18 14 8.5866 10.1916 -3.4437 19 1 8.5083 11.0698 -2.2486 20 1 9.3081 10.8995 -4.5317 21 1 7.2145 9.8520 -3.8990 22 16 2.3697 2.3770 -1.4372 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.1527 1.7599 2.0894 29 1 2.9962 4.1188 1.6349 30 1 3.0581 5.8650 -0.2714 31 1 2.8494 5.2756 -1.9380 32 1 5.2445 4.8035 -0.2859 33 1 4.8169 6.5371 -2.6313 34 1 5.0256 7.1272 -0.9650 35 1 7.0791 5.0208 -0.0936 36 1 8.5291 5.9236 -0.5952 37 1 7.1941 6.7684 0.2240 38 1 6.6906 5.3509 -3.7812 39 1 8.2351 5.0956 -2.9345 40 1 6.7851 4.1930 -2.4325 41 1 6.8520 7.8045 -3.3346 42 1 7.0614 8.3936 -1.6680 43 1 11.2964 9.3340 -3.4818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174270908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = -10.563120 kcal Electronic energy + Delta-G solvation = -19424.999685 eV Core-core repulsion = 16595.053206 eV Total energy + Delta-G solvation = -2829.946479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52507 -38.80751 -36.17166 -34.64135 -33.90460 -30.54747 -29.34876 -27.93098 -27.21134 -25.89751 -24.17534 -23.37737 -22.92548 -19.81447 -19.38016 -18.86816 -17.96553 -16.56065 -16.42643 -16.19922 -15.81752 -15.41486 -14.99613 -14.98387 -14.61934 -14.49373 -14.07992 -13.92298 -13.82459 -13.51917 -13.04560 -12.86396 -12.81072 -12.76001 -12.56362 -12.46564 -12.22417 -12.15397 -12.07159 -11.87567 -11.71278 -11.47526 -11.36755 -11.01507 -10.83354 -10.69699 -9.49985 -9.33382 -9.20732 -8.21343 -6.21695 0.09200 0.74806 1.17428 1.35680 1.37968 1.48954 1.85050 2.39783 3.13607 3.35182 3.84200 3.94267 4.09123 4.18173 4.21996 4.29705 4.36156 4.44868 4.53403 4.61341 4.73807 4.77433 4.82086 4.89628 4.90905 5.01796 5.03495 5.07023 5.08461 5.18226 5.31697 5.35662 5.36893 5.40877 5.44334 5.51874 5.61594 5.67516 5.75068 5.81462 6.06044 6.41523 6.47751 6.85693 7.40665 8.94923 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.002912 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.310162 B = 9612.022201 C = 9700.863836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.180 4.180 4 C -0.148 4.148 5 C -0.136 4.136 6 C -0.182 4.182 7 C 0.130 3.870 8 N -0.684 5.684 9 C 0.080 3.920 10 C -0.047 4.047 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.003 4.003 14 C -0.503 4.503 15 H 0.043 0.957 16 C -0.001 4.001 17 N -0.955 5.955 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.249 1.249 22 S 0.091 5.909 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.345 0.655 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.482 -14.429 8.587 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.297 4.297 4 C -0.178 4.178 5 C -0.167 4.167 6 C -0.300 4.300 7 C 0.000 4.000 8 N -0.317 5.317 9 C -0.049 4.049 10 C -0.048 4.048 11 C -0.182 4.182 12 C -0.166 4.166 13 C -0.041 4.041 14 C -0.541 4.541 15 H 0.062 0.938 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.172 1.172 22 S 0.356 5.644 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.476 -14.879 6.344 28.509 hybrid contribution 0.556 1.843 1.808 2.641 sum -22.920 -13.036 8.151 27.599 Atomic orbital electron populations 1.21766 0.93669 1.02753 1.02026 1.20191 0.96659 0.88609 1.03890 1.24866 1.07847 1.01649 0.95386 1.20242 1.03502 0.94007 1.00016 1.20309 1.02788 0.97765 0.95866 1.24365 1.09078 0.99936 0.96579 1.20326 0.88508 0.90741 1.00424 1.60510 1.03767 1.31734 1.35652 1.21892 0.94183 0.89370 0.99475 1.20337 0.93200 0.95474 0.95756 1.21693 1.00245 1.00302 0.95911 1.21507 0.99424 0.97856 0.97816 1.19605 0.94475 0.94399 0.95654 1.21424 0.92330 0.99128 1.41209 0.93838 1.25941 0.95457 1.02464 0.95780 1.70066 1.08536 1.31953 1.49166 0.85784 0.79804 0.79550 0.78230 1.19526 1.21541 1.17234 1.84369 1.64192 1.05563 1.10260 0.90612 0.92363 0.93268 0.90705 0.88795 0.82841 0.83500 0.92482 0.90357 0.83485 0.91472 0.94860 0.91809 0.94540 0.93465 0.94369 0.95339 0.91840 0.96817 0.96826 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.05 -0.69 6.43 29.85 0.19 -0.50 16 3 C -0.18 -3.20 5.76 24.59 0.14 -3.06 16 4 C -0.15 -2.58 10.05 21.22 0.21 -2.37 16 5 C -0.14 -2.60 10.05 21.22 0.21 -2.39 16 6 C -0.18 -3.90 6.02 24.59 0.15 -3.75 16 7 C 0.13 2.87 6.18 85.56 0.53 3.39 16 8 N -0.68 -17.75 5.70 -517.92 -2.95 -20.70 16 9 C 0.08 2.40 4.65 86.30 0.40 2.80 16 10 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 11 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 12 C -0.11 -4.20 8.06 71.98 0.58 -3.62 16 13 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 14 C -0.50 -28.41 8.20 25.60 0.21 -28.20 16 15 H 0.04 2.70 5.92 -2.91 -0.02 2.68 16 16 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 17 N -0.96 -60.49 13.96 21.44 0.30 -60.19 16 18 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 S 0.09 1.92 23.31 -56.49 -1.32 0.60 16 23 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.35 8.69 6.77 -89.69 -0.61 8.08 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.92 6.57 -2.39 -0.02 1.91 16 36 H 0.04 1.55 6.61 -2.39 -0.02 1.53 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.03 1.25 6.62 -2.39 -0.02 1.23 16 40 H 0.06 2.20 7.60 -2.39 -0.02 2.18 16 41 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 42 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 43 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -64.72 352.42 2.66 -62.06 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.31 Total: 15.40 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 4.43 Total: -43.92 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.65 Total: -80.89 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.32 Total: 0.60 kcal Total: -64.72 2.66 -62.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174270908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.501 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds