Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47331 * 239.99944 * 2 1 3 5 5 C 1.50700 * 109.46980 * 59.99512 * 4 2 1 6 6 H 1.08003 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99965 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00027 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46988 * 120.00221 * 9 7 5 12 12 H 1.48497 * 109.47269 * 239.99922 * 9 7 5 13 13 C 1.53002 * 109.47265 * 119.99812 * 2 1 3 14 14 N 1.46896 * 109.47138 * 300.00265 * 13 2 1 15 15 C 1.46897 * 111.00117 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47217 * 179.97438 * 15 14 13 17 17 C 1.38259 * 119.94179 * 270.01822 * 16 15 14 18 18 C 1.38182 * 120.10013 * 179.72124 * 17 16 15 19 19 C 1.38652 * 119.96642 * 0.53605 * 18 17 16 20 20 O 1.35955 * 120.06198 * 179.74801 * 19 18 17 21 21 C 1.38904 * 119.87662 * 359.46487 * 19 18 17 22 22 F 1.35107 * 120.04945 * 180.27710 * 21 19 18 23 23 C 1.38257 * 119.93738 * 89.99544 * 16 15 14 24 24 H 1.09002 * 109.47353 * 299.99892 * 1 2 3 25 25 H 1.08998 * 109.47224 * 60.00164 * 1 2 3 26 26 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47104 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47062 * 299.99935 * 3 2 1 29 29 H 1.08992 * 109.47037 * 59.99923 * 3 2 1 30 30 H 1.08999 * 109.47329 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47066 * 300.00059 * 4 2 1 32 32 H 0.97000 * 120.00519 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47035 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47077 * 60.00353 * 13 2 1 35 35 H 1.00911 * 110.99682 * 303.95546 * 14 13 2 36 36 H 1.08999 * 109.47249 * 59.99626 * 15 14 13 37 37 H 1.09005 * 109.46599 * 299.99703 * 15 14 13 38 38 H 1.08002 * 119.94587 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.01357 * 180.25559 * 18 17 16 40 40 H 0.96705 * 113.99605 * 269.71855 * 20 19 18 41 41 H 1.07999 * 119.98397 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9169 0.8674 -2.3807 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3993 -5.2571 10 1 0.4243 1.5662 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4243 -0.5339 -6.0660 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0219 -0.6944 3.6703 16 6 1.5012 0.0429 4.8771 17 6 2.2408 1.0725 5.4288 18 6 1.7639 1.7545 6.5319 19 6 0.5470 1.3988 7.0932 20 8 0.0783 2.0652 8.1816 21 6 -0.1951 0.3642 6.5380 22 9 -1.3839 0.0184 7.0788 23 6 0.2846 -0.3113 5.4302 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8617 -1.8823 -4.7336 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.8198 0.9437 2.4401 36 1 3.1117 -0.6939 3.6869 37 1 1.6587 -1.7221 3.6873 38 1 3.1909 1.3467 4.9945 39 1 2.3408 2.5613 6.9593 40 1 0.3514 1.6808 9.0259 41 1 -0.2913 -1.1159 4.9974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174417899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = -81.843772 kcal Electronic energy + Delta-G solvation = -21468.151845 eV Core-core repulsion = 18068.901229 eV Total energy + Delta-G solvation = -3399.250616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.06027 -39.90241 -37.95473 -37.06406 -34.32576 -32.27279 -30.99265 -30.15938 -27.05173 -26.34646 -26.02099 -24.27248 -23.22634 -22.27590 -21.54666 -18.90750 -18.03822 -17.07640 -16.97898 -16.27173 -16.24055 -15.55776 -15.24165 -14.83580 -14.40578 -14.18907 -14.15814 -14.01356 -13.37136 -13.08956 -12.76542 -12.62688 -12.29909 -12.02477 -11.94233 -11.73486 -11.52189 -10.99275 -10.88682 -10.87938 -10.75696 -10.50703 -10.28168 -10.12015 -9.70014 -9.20339 -9.05696 -8.85865 -8.77632 -8.32550 -8.15893 -5.96946 -3.96894 0.75327 0.89951 3.14925 3.32258 3.40282 3.43900 3.66830 4.05328 4.37779 4.46027 4.50017 4.72133 4.92456 5.00936 5.25934 5.38940 5.39561 5.58298 5.67357 5.70731 5.73746 5.81481 5.89097 5.96684 6.20933 6.24849 6.31651 6.45048 6.48744 6.65629 6.77166 6.82707 7.16207 7.19814 7.23747 7.25775 7.34587 7.59215 7.69713 7.84305 8.03438 8.47870 9.08735 9.66085 11.14781 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.002852 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.365140 B = 9813.761692 C = 9889.138245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.093 3.907 16 C -0.053 4.053 17 C -0.109 4.109 18 C -0.117 4.117 19 C 0.066 3.934 20 O -0.489 6.489 21 C 0.073 3.927 22 F -0.135 7.135 23 C -0.117 4.117 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.341 0.659 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.390 0.610 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 3.717 22.674 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.035 4.035 16 C -0.054 4.054 17 C -0.128 4.128 18 C -0.135 4.135 19 C 0.021 3.979 20 O -0.299 6.299 21 C 0.053 3.947 22 F -0.113 7.113 23 C -0.137 4.137 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.245 0.755 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.099 3.628 22.136 22.458 hybrid contribution 0.652 0.283 -0.469 0.851 sum -0.448 3.911 21.667 22.021 Atomic orbital electron populations 1.21604 0.94951 1.00594 1.00234 1.20636 0.95916 0.95013 0.94320 1.21774 0.99668 0.96750 1.00489 1.19130 0.95886 0.95216 0.90169 1.21280 1.30655 1.11915 0.90590 0.92224 1.25017 0.95405 0.95127 0.99077 1.69970 1.37370 1.23248 1.23192 0.86610 0.78597 0.79762 0.83485 1.19758 1.21203 1.21149 1.22152 0.96441 0.98205 0.89086 1.60634 1.63633 1.06536 1.00559 1.20915 0.97180 0.98051 0.87390 1.19780 0.93527 0.95954 0.96113 1.21060 1.00488 0.95395 0.95860 1.21271 0.94377 1.00411 0.97449 1.18434 0.93682 0.93522 0.92300 1.84893 1.75700 1.54144 1.15171 1.18126 0.83581 0.96671 0.96331 1.91499 1.43303 1.91343 1.85171 1.21025 0.96732 1.01288 0.94633 0.93880 0.92669 0.94160 0.94083 0.91670 0.94805 0.96902 0.96652 0.93220 0.95657 0.91380 0.84010 0.94101 0.89923 0.84956 0.84458 0.75471 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.14 4.65 -3.82 -0.02 1.12 16 14 N -0.68 -9.27 5.70 -115.06 -0.66 -9.93 16 15 C 0.09 1.03 5.81 -4.98 -0.03 1.00 16 16 C -0.05 -0.55 5.39 -104.61 -0.56 -1.11 16 17 C -0.11 -0.98 9.69 -39.59 -0.38 -1.37 16 18 C -0.12 -1.02 9.98 -39.45 -0.39 -1.42 16 19 C 0.07 0.68 6.71 -39.18 -0.26 0.41 16 20 O -0.49 -4.51 13.37 -19.60 -0.26 -4.78 16 21 C 0.07 0.83 7.31 -39.30 -0.29 0.54 16 22 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 23 C -0.12 -1.28 9.67 -39.54 -0.38 -1.66 16 24 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 25 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 29 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.34 4.51 6.76 -39.29 -0.27 4.24 16 36 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.39 1.62 9.06 45.56 0.41 2.03 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -31.01 339.67 -7.69 -38.70 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.35 Total: 1.53 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.29 Total: -19.56 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.08 Total: -35.89 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.26 Total: -4.78 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.01 -7.69 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174417899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.145 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds