Wall clock time and date at job start Tue Mar 31 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47331 * 239.99944 * 2 1 3 5 5 C 1.50700 * 109.46980 * 59.99512 * 4 2 1 6 6 H 1.08003 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99965 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00027 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46988 * 120.00221 * 9 7 5 12 12 H 1.48497 * 109.47269 * 239.99922 * 9 7 5 13 13 C 1.53002 * 109.47265 * 119.99812 * 2 1 3 14 14 N 1.46896 * 109.47138 * 300.00265 * 13 2 1 15 15 C 1.46897 * 111.00117 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47217 * 179.97438 * 15 14 13 17 17 C 1.38259 * 119.94179 * 270.01822 * 16 15 14 18 18 C 1.38182 * 120.10013 * 179.72124 * 17 16 15 19 19 C 1.38652 * 119.96642 * 0.53605 * 18 17 16 20 20 O 1.35955 * 120.06198 * 179.74801 * 19 18 17 21 21 C 1.38904 * 119.87662 * 359.46487 * 19 18 17 22 22 F 1.35107 * 120.04945 * 180.27710 * 21 19 18 23 23 C 1.38257 * 119.93738 * 89.99544 * 16 15 14 24 24 H 1.09002 * 109.47353 * 299.99892 * 1 2 3 25 25 H 1.08998 * 109.47224 * 60.00164 * 1 2 3 26 26 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47104 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47062 * 299.99935 * 3 2 1 29 29 H 1.08992 * 109.47037 * 59.99923 * 3 2 1 30 30 H 1.08999 * 109.47329 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47066 * 300.00059 * 4 2 1 32 32 H 0.97000 * 120.00519 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47035 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47077 * 60.00353 * 13 2 1 35 35 H 1.00911 * 110.99682 * 303.95546 * 14 13 2 36 36 H 1.08999 * 109.47249 * 59.99626 * 15 14 13 37 37 H 1.09005 * 109.46599 * 299.99703 * 15 14 13 38 38 H 1.08002 * 119.94587 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.01357 * 180.25559 * 18 17 16 40 40 H 0.96705 * 113.99605 * 269.71855 * 20 19 18 41 41 H 1.07999 * 119.98397 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9169 0.8674 -2.3807 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2490 0.3993 -5.2571 10 1 0.4243 1.5662 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4243 -0.5339 -6.0660 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0219 -0.6944 3.6703 16 6 1.5012 0.0429 4.8771 17 6 2.2408 1.0725 5.4288 18 6 1.7639 1.7545 6.5319 19 6 0.5470 1.3988 7.0932 20 8 0.0783 2.0652 8.1816 21 6 -0.1951 0.3642 6.5380 22 9 -1.3839 0.0184 7.0788 23 6 0.2846 -0.3113 5.4302 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8617 -1.8823 -4.7336 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.8198 0.9437 2.4401 36 1 3.1117 -0.6939 3.6869 37 1 1.6587 -1.7221 3.6873 38 1 3.1909 1.3467 4.9945 39 1 2.3408 2.5613 6.9593 40 1 0.3514 1.6808 9.0259 41 1 -0.2913 -1.1159 4.9974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174417899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:47 Heat of formation + Delta-G solvation = -101.973704 kcal Electronic energy + Delta-G solvation = -21469.024745 eV Core-core repulsion = 18068.901229 eV Total energy + Delta-G solvation = -3400.123515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.92326 -40.65062 -39.20450 -38.02550 -35.64900 -34.17961 -31.75412 -31.13235 -28.94959 -27.87370 -27.22047 -25.68527 -23.96914 -23.89122 -22.40022 -19.64478 -19.53986 -18.31969 -17.94857 -17.80045 -17.05348 -16.67432 -16.52654 -16.07091 -15.69406 -15.51457 -14.94414 -14.90702 -14.67753 -14.47316 -14.20900 -13.88685 -13.58661 -13.47346 -13.04368 -12.84471 -12.76830 -12.64587 -12.42929 -12.35645 -12.21131 -12.12676 -11.85138 -11.58953 -11.35832 -10.84524 -10.72930 -10.49871 -9.92722 -9.61197 -9.23322 -8.13309 -6.19653 0.00764 0.16404 1.40227 1.41802 1.53531 2.40696 2.45075 2.97535 3.20925 3.32797 3.42776 3.71160 3.88591 4.16082 4.21287 4.23292 4.28683 4.40447 4.50395 4.65797 4.80390 4.83938 4.86397 4.98434 5.00675 5.06490 5.10147 5.18257 5.23497 5.24303 5.49673 5.54211 5.56483 5.60727 5.67057 5.75658 5.89436 5.94854 6.07510 6.38819 6.53273 6.71439 6.95935 7.47622 8.99151 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.002852 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.365140 B = 9813.761692 C = 9889.138245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.682 5.682 15 C 0.097 3.903 16 C -0.061 4.061 17 C -0.101 4.101 18 C -0.113 4.113 19 C 0.067 3.933 20 O -0.502 6.502 21 C 0.047 3.953 22 F -0.147 7.147 23 C -0.124 4.124 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.066 0.934 30 H -0.013 1.013 31 H -0.015 1.015 32 H 0.259 0.741 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.346 0.654 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.411 0.589 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 5.479 23.889 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.056 4.056 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.315 5.315 15 C -0.032 4.032 16 C -0.062 4.062 17 C -0.120 4.120 18 C -0.132 4.132 19 C 0.022 3.978 20 O -0.315 6.315 21 C 0.027 3.973 22 F -0.126 7.126 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.270 0.730 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.881 5.398 23.385 24.016 hybrid contribution 0.595 -0.268 -0.748 0.992 sum -0.286 5.130 22.637 23.213 Atomic orbital electron populations 1.21506 0.94603 1.00030 1.00332 1.20503 0.96074 0.95705 0.93360 1.21683 0.99641 0.95561 1.01074 1.19012 0.94107 0.94086 0.92594 1.21663 1.30022 1.11858 0.91525 0.91742 1.25892 0.95761 0.95923 1.02495 1.70102 1.38931 1.24932 1.23941 0.85556 0.78132 0.78817 0.79524 1.18575 1.20776 1.20944 1.21826 0.96238 0.97530 0.89026 1.60530 1.63809 1.06730 1.00387 1.20907 0.98027 0.97882 0.86359 1.19704 0.93600 0.96737 0.96124 1.21323 1.00921 0.94314 0.95406 1.21527 0.93857 1.00706 0.97075 1.18602 0.93851 0.92849 0.92545 1.84828 1.76092 1.54419 1.16156 1.18374 0.83735 0.97961 0.97191 1.91459 1.44121 1.91614 1.85431 1.21077 0.97140 1.01367 0.94744 0.91625 0.94504 0.95091 0.94080 0.93719 0.91493 0.99472 0.99705 0.93186 0.95649 0.92255 0.83441 0.92637 0.90026 0.82775 0.82006 0.72984 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.06 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.12 -4.25 7.89 71.98 0.57 -3.68 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -28.17 7.65 25.60 0.20 -27.97 16 6 H 0.06 3.42 5.68 -2.91 -0.02 3.41 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.08 2.63 4.65 86.30 0.40 3.03 16 14 N -0.68 -17.03 5.70 -517.95 -2.95 -19.98 16 15 C 0.10 1.91 5.81 85.56 0.50 2.41 16 16 C -0.06 -1.12 5.39 -19.86 -0.11 -1.23 16 17 C -0.10 -1.49 9.69 22.26 0.22 -1.27 16 18 C -0.11 -1.63 9.98 22.36 0.22 -1.41 16 19 C 0.07 1.24 6.71 22.53 0.15 1.39 16 20 O -0.50 -8.27 13.37 -93.04 -1.24 -9.51 16 21 C 0.05 1.02 7.31 22.45 0.16 1.19 16 22 F -0.15 -3.64 17.11 44.97 0.77 -2.87 16 23 C -0.12 -2.56 9.67 22.30 0.22 -2.34 16 24 H 0.06 2.17 7.60 -2.39 -0.02 2.15 16 25 H 0.04 1.50 6.62 -2.39 -0.02 1.48 16 26 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 29 H 0.07 1.88 6.57 -2.39 -0.02 1.86 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.35 8.04 6.76 -89.69 -0.61 7.43 16 36 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 37 H 0.08 1.64 8.09 -2.38 -0.02 1.62 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.41 2.58 9.06 -74.05 -0.67 1.91 16 41 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.32 339.67 2.30 -65.02 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -0.23 Total: 10.80 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 3.66 Total: -33.19 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.67 Total: -76.68 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.24 Total: -9.51 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.77 Total: -2.87 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.32 2.30 -65.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174417899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.954 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds