Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35897 * 116.99993 * 2 1 4 4 C 1.38771 * 120.04252 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.99086 * 180.02562 * 4 3 2 6 6 C 1.38244 * 120.08321 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.95979 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47195 * 220.00549 * 7 6 5 9 9 C 1.53003 * 109.46748 * 100.00190 * 7 6 5 10 10 N 1.46903 * 109.46966 * 340.00972 * 7 6 5 11 11 C 1.46898 * 110.99673 * 204.99726 * 10 7 6 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 7 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47242 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99967 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00542 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00563 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99513 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46964 * 90.00276 * 18 16 14 20 20 H 1.48502 * 109.47035 * 210.00108 * 18 16 14 21 21 H 1.48499 * 109.47257 * 330.00183 * 18 16 14 22 22 C 1.38478 * 120.08663 * 0.30151 * 6 5 4 23 23 F 1.35100 * 119.99728 * 179.70159 * 22 6 5 24 24 C 1.38382 * 120.00095 * 359.44689 * 22 6 5 25 25 H 1.09005 * 109.47503 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47185 * 299.99740 * 1 2 3 27 27 H 1.08997 * 109.47322 * 60.00127 * 1 2 3 28 28 H 1.07992 * 120.00343 * 0.05167 * 4 3 2 29 29 H 1.08008 * 119.95662 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.46768 * 180.02562 * 9 7 6 31 31 H 1.08995 * 109.47200 * 300.00465 * 9 7 6 32 32 H 1.09004 * 109.46732 * 60.00749 * 9 7 6 33 33 H 1.00895 * 111.00497 * 81.03648 * 10 7 6 34 34 H 1.09001 * 109.47062 * 59.99745 * 11 10 7 35 35 H 1.08993 * 109.47084 * 299.99192 * 11 10 7 36 36 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 37 37 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 38 38 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 40 40 H 0.96999 * 120.00061 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03941 * 180.30193 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4316 1.2845 0.0005 5 6 4.0577 2.5159 0.0011 6 6 3.3054 3.6757 0.0005 7 6 3.9912 5.0176 0.0005 8 1 3.4555 5.6995 0.6608 9 6 4.0008 5.5854 -1.4202 10 7 5.3729 4.8614 0.4746 11 6 5.8780 6.1163 1.0472 12 6 7.3160 5.9145 1.5294 13 6 7.8423 7.2217 2.1252 14 6 9.2588 7.0231 2.5995 15 1 9.7361 6.0608 2.4869 16 6 9.9456 8.0697 3.1773 17 7 11.1820 7.8966 3.5908 18 14 9.1198 9.7339 3.3728 19 1 8.4260 9.7912 4.6844 20 1 10.1453 10.8060 3.3081 21 1 8.1318 9.9275 2.2812 22 6 1.9223 3.6061 0.0058 23 9 1.1890 4.7407 0.0113 24 6 1.2915 2.3744 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0205 0.3793 0.0001 29 1 5.1362 2.5726 0.0011 30 1 4.4972 6.5558 -1.4203 31 1 4.5365 4.9035 -2.0804 32 1 2.9756 5.7014 -1.7720 33 1 5.9745 4.5339 -0.2661 34 1 5.2507 6.4101 1.8889 35 1 5.8556 6.8973 0.2873 36 1 7.3380 5.1335 2.2894 37 1 7.9434 5.6204 0.6880 38 1 7.8202 8.0023 1.3648 39 1 7.2149 7.5160 2.9665 40 1 11.6652 8.6331 3.9970 41 1 0.2129 2.3194 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = -70.745489 kcal Electronic energy + Delta-G solvation = -21274.588233 eV Core-core repulsion = 17875.818875 eV Total energy + Delta-G solvation = -3398.769358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09404 -40.37058 -38.41844 -36.49079 -34.00925 -32.17144 -30.95911 -30.27280 -28.99664 -27.46735 -26.26838 -23.56856 -23.02764 -22.01638 -20.85128 -19.99461 -18.74463 -17.23891 -16.78081 -16.28141 -16.19765 -15.95624 -15.56059 -15.18191 -14.91393 -14.51900 -14.33815 -14.06109 -13.75004 -13.22488 -12.99128 -12.91929 -12.69183 -12.49024 -12.21705 -12.04372 -11.79127 -11.63606 -11.34698 -11.15650 -10.98680 -10.94344 -10.77260 -9.94507 -9.71894 -9.57489 -9.15520 -9.11051 -8.51504 -8.41024 -8.24351 -6.01845 -3.99515 0.96233 1.07854 2.89772 3.32417 3.38106 3.39536 3.43118 4.01213 4.15790 4.47291 4.52961 4.63640 4.65113 4.76515 4.83777 4.99760 5.06568 5.10281 5.22454 5.32106 5.39936 5.51525 5.56997 5.73818 5.78842 5.84628 5.87630 5.94824 6.08744 6.18553 6.22270 6.50438 6.56914 6.59221 6.93251 7.02229 7.18647 7.35677 7.44285 7.53039 7.82653 8.57267 9.03743 9.60877 11.11709 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031320 B = 0.002854 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.772766 B = 9808.005863 C =10276.140700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.147 3.853 4 C -0.162 4.162 5 C -0.028 4.028 6 C -0.135 4.135 7 C 0.126 3.874 8 H 0.088 0.912 9 C -0.177 4.177 10 N -0.682 5.682 11 C 0.057 3.943 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.137 3.863 23 F -0.137 7.137 24 C -0.248 4.248 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.053 -13.056 -10.722 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.102 3.898 4 C -0.181 4.181 5 C -0.046 4.046 6 C -0.137 4.137 7 C 0.015 3.985 8 H 0.106 0.894 9 C -0.236 4.236 10 N -0.313 5.313 11 C -0.071 4.071 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C 0.117 3.883 23 F -0.115 7.115 24 C -0.268 4.268 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.033 -13.362 -10.020 28.451 hybrid contribution -0.681 1.811 -0.565 2.015 sum -23.713 -11.551 -10.584 28.422 Atomic orbital electron populations 1.23090 0.78278 1.04090 1.01519 1.86100 1.21504 1.26486 1.88541 1.18727 0.92143 0.83544 0.95420 1.20561 0.91085 0.99171 1.07242 1.20784 1.00973 0.89435 0.93382 1.19845 0.90947 0.97074 1.05801 1.20242 0.90823 0.92125 0.95295 0.89438 1.22463 1.02558 1.01544 0.97007 1.60607 1.01532 1.31790 1.37328 1.22191 0.98061 0.88808 0.98075 1.21443 0.91758 1.00263 1.00248 1.19540 0.96844 0.93193 0.95521 1.21149 0.96440 0.99081 1.38955 0.91013 1.25046 0.94729 0.98841 0.95009 1.69918 1.10546 1.32369 1.41562 0.86768 0.79391 0.84057 0.78985 1.20311 1.21455 1.19093 1.17185 0.88531 0.81478 1.01134 1.91485 1.77241 1.49140 1.93659 1.21029 1.00825 0.91179 1.13749 0.88062 0.92485 0.92568 0.84540 0.83359 0.91844 0.92114 0.92144 0.84085 0.91420 0.95486 0.91893 0.92974 0.96865 0.97067 0.92788 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.97 10.50 -19.42 -0.20 -3.17 16 3 C 0.15 1.53 6.69 -39.22 -0.26 1.27 16 4 C -0.16 -1.66 9.99 -39.42 -0.39 -2.06 16 5 C -0.03 -0.30 9.32 -39.62 -0.37 -0.67 16 6 C -0.13 -1.58 5.09 -104.53 -0.53 -2.12 16 7 C 0.13 1.52 2.52 -68.86 -0.17 1.35 16 8 H 0.09 1.15 7.59 -51.93 -0.39 0.75 16 9 C -0.18 -1.89 9.14 37.16 0.34 -1.55 16 10 N -0.68 -9.06 5.08 -107.95 -0.55 -9.61 16 11 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 12 C -0.10 -1.93 5.41 -26.73 -0.14 -2.08 16 13 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 14 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 15 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 18 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.14 1.59 7.24 -39.44 -0.29 1.30 16 23 F -0.14 -1.66 16.65 2.25 0.04 -1.62 16 24 C -0.25 -2.54 9.02 -39.37 -0.35 -2.89 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.15 1.50 6.83 -52.48 -0.36 1.14 16 30 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.34 4.11 8.00 -39.29 -0.31 3.79 16 34 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.03 0.42 7.43 -51.93 -0.39 0.03 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.14 1.12 6.30 -52.48 -0.33 0.79 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -31.66 340.10 -7.51 -39.17 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.27 Total: -0.44 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -1.75 Total: -19.31 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.22 Total: -37.06 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.20 Total: -3.17 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.66 -7.51 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.577 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds