Wall clock time and date at job start Tue Mar 31 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99672 * 2 1 4 4 C 1.38774 * 120.04085 * 0.02575 * 3 2 1 5 5 C 1.38134 * 119.98764 * 179.72215 * 4 3 2 6 6 C 1.38252 * 120.08472 * 0.50805 * 5 4 3 7 7 C 1.50693 * 119.95801 * 179.76762 * 6 5 4 8 8 H 1.09000 * 109.47305 * 144.72751 * 7 6 5 9 9 C 1.53003 * 109.46915 * 264.72386 * 7 6 5 10 10 N 1.46901 * 109.47182 * 24.72173 * 7 6 5 11 11 C 1.46905 * 110.99870 * 155.00014 * 10 7 6 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 7 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99686 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00356 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46869 * 89.99730 * 18 16 14 20 20 H 1.48492 * 109.47317 * 209.99658 * 18 16 14 21 21 H 1.48499 * 109.46841 * 330.00385 * 18 16 14 22 22 C 1.38480 * 120.08020 * 359.48966 * 6 5 4 23 23 F 1.35097 * 119.99241 * 180.23099 * 22 6 5 24 24 C 1.38374 * 120.00608 * 0.25477 * 22 6 5 25 25 H 1.09008 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47288 * 299.99806 * 1 2 3 27 27 H 1.08999 * 109.47791 * 59.99930 * 1 2 3 28 28 H 1.07995 * 120.00151 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.95337 * 180.27453 * 5 4 3 30 30 H 1.09007 * 109.47106 * 180.02562 * 9 7 6 31 31 H 1.08993 * 109.47190 * 299.99987 * 9 7 6 32 32 H 1.08996 * 109.47234 * 60.00392 * 9 7 6 33 33 H 1.00901 * 111.00067 * 278.95190 * 10 7 6 34 34 H 1.09001 * 109.46798 * 300.00327 * 11 10 7 35 35 H 1.08998 * 109.46961 * 60.00043 * 11 10 7 36 36 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 37 37 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 38 38 H 1.09001 * 109.46514 * 300.00105 * 13 12 11 39 39 H 1.08998 * 109.46924 * 59.99625 * 13 12 11 40 40 H 0.97004 * 119.99803 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.04064 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2908 2.3753 0.0005 5 6 1.9190 3.6055 0.0063 6 6 3.2996 3.6788 0.0010 7 6 3.9819 5.0224 0.0021 8 1 4.8968 4.9648 0.5917 9 6 4.3253 5.4211 -1.4346 10 7 3.0842 6.0270 0.5877 11 6 3.8463 7.1507 1.1486 12 6 2.8795 8.1736 1.7485 13 6 3.6731 9.3443 2.3321 14 6 2.7208 10.3521 2.9224 15 1 1.6560 10.1751 2.8855 16 6 3.2089 11.4996 3.5106 17 7 2.3778 12.3789 4.0263 18 14 5.0506 11.8054 3.5753 19 1 5.4722 12.5466 2.3595 20 1 5.3772 12.6070 4.7818 21 1 5.7663 10.5056 3.6356 22 6 4.0562 2.5189 0.0005 23 9 5.4051 2.5926 0.0000 24 6 3.4306 1.2847 0.0000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2123 2.3195 0.0005 29 1 1.3308 4.5114 0.0112 30 1 4.8193 6.3928 -1.4339 31 1 4.9913 4.6757 -1.8692 32 1 3.4104 5.4787 -2.0243 33 1 2.4108 6.3497 -0.0909 34 1 4.5152 6.7835 1.9270 35 1 4.4315 7.6227 0.3595 36 1 2.2103 8.5408 0.9705 37 1 2.2946 7.7014 2.5377 38 1 4.3426 8.9773 3.1101 39 1 4.2577 9.8164 1.5426 40 1 2.7212 13.1864 4.4398 41 1 4.0201 0.3797 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:19 Heat of formation + Delta-G solvation = -70.813512 kcal Electronic energy + Delta-G solvation = -21275.473431 eV Core-core repulsion = 17876.701123 eV Total energy + Delta-G solvation = -3398.772308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.07422 -40.38147 -38.38891 -36.49084 -34.02057 -32.18659 -31.04599 -30.27027 -28.81241 -27.54193 -26.23725 -23.77120 -22.97568 -21.91581 -20.86335 -19.99711 -18.72116 -17.19359 -16.74867 -16.27660 -16.20610 -15.99586 -15.57605 -15.25884 -14.94796 -14.54120 -14.25035 -14.04632 -13.62555 -13.17281 -12.98525 -12.84666 -12.69030 -12.55641 -12.47859 -12.06677 -11.80868 -11.65310 -11.24939 -11.10909 -11.00743 -10.92401 -10.76731 -9.94467 -9.73846 -9.57708 -9.16249 -9.07157 -8.52151 -8.42560 -8.25500 -6.02646 -4.00339 0.94249 1.09723 2.82828 3.31612 3.36803 3.39209 3.43285 4.11944 4.24501 4.46787 4.50700 4.63251 4.74401 4.77931 4.80875 5.03430 5.07541 5.13049 5.19601 5.26207 5.31402 5.48386 5.57250 5.73057 5.76460 5.86273 5.86655 5.99318 6.09789 6.17630 6.19082 6.48552 6.55826 6.58879 6.91965 7.02352 7.17985 7.35652 7.43575 7.52202 7.81961 8.56439 9.02824 9.60123 11.10929 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.002951 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.773705 B = 9485.825352 C =10135.455862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.148 3.852 4 C -0.218 4.218 5 C -0.027 4.027 6 C -0.134 4.134 7 C 0.125 3.875 8 H 0.088 0.912 9 C -0.176 4.176 10 N -0.682 5.682 11 C 0.057 3.943 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.138 3.862 23 F -0.134 7.134 24 C -0.192 4.192 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.340 0.660 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -24.438 -11.899 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.102 3.898 4 C -0.237 4.237 5 C -0.045 4.045 6 C -0.136 4.136 7 C 0.014 3.986 8 H 0.106 0.894 9 C -0.235 4.235 10 N -0.312 5.312 11 C -0.071 4.071 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C 0.118 3.882 23 F -0.112 7.112 24 C -0.211 4.211 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.710 -24.774 -11.189 27.193 hybrid contribution 1.208 0.868 -0.670 1.631 sum 0.498 -23.906 -11.859 26.690 Atomic orbital electron populations 1.23101 0.77931 1.04071 1.01724 1.86051 1.21713 1.26661 1.88553 1.18591 0.91348 0.84431 0.95427 1.21328 1.00458 0.92073 1.09855 1.20695 0.93036 0.97504 0.93284 1.19818 0.94252 0.93734 1.05766 1.20257 0.95219 0.88690 0.94399 0.89362 1.22461 1.02147 1.02045 0.96874 1.60622 1.17239 1.14691 1.38681 1.22193 0.96503 0.90537 0.97915 1.21440 0.97565 0.94943 0.99746 1.19542 0.96257 0.93701 0.95598 1.21149 0.94714 1.03006 1.36780 0.91036 1.25047 0.97734 0.95934 0.94905 1.69923 1.34522 1.10619 1.39355 0.86766 0.86337 0.78546 0.77561 1.20384 1.21414 1.18999 1.17081 0.76786 0.93093 1.01211 1.91496 1.28956 1.97098 1.93656 1.20117 0.92539 0.97348 1.11136 0.88139 0.92284 0.92420 0.84880 0.84015 0.91846 0.92093 0.92174 0.84193 0.91384 0.95479 0.93039 0.91909 0.96610 0.97287 0.92784 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.00 10.50 -19.44 -0.20 -3.21 16 3 C 0.15 1.54 6.69 -39.22 -0.26 1.27 16 4 C -0.22 -2.09 9.04 -39.42 -0.36 -2.45 16 5 C -0.03 -0.29 9.31 -39.61 -0.37 -0.65 16 6 C -0.13 -1.57 5.07 -104.53 -0.53 -2.10 16 7 C 0.12 1.51 2.57 -68.87 -0.18 1.34 16 8 H 0.09 1.16 7.44 -51.93 -0.39 0.78 16 9 C -0.18 -1.87 9.14 37.16 0.34 -1.53 16 10 N -0.68 -9.10 5.24 -107.95 -0.57 -9.66 16 11 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 12 C -0.10 -1.93 5.41 -26.73 -0.14 -2.08 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 18 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.14 1.64 7.24 -39.44 -0.29 1.35 16 23 F -0.13 -1.66 16.56 2.25 0.04 -1.62 16 24 C -0.19 -2.10 9.97 -39.37 -0.39 -2.49 16 25 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 29 H 0.14 1.39 6.88 -52.48 -0.36 1.03 16 30 H 0.06 0.69 7.46 -51.92 -0.39 0.30 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.34 4.10 7.90 -39.29 -0.31 3.79 16 34 H 0.07 1.11 8.06 -51.93 -0.42 0.70 16 35 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -31.71 339.99 -7.52 -39.23 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.26 Total: -0.51 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.75 Total: -19.21 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.21 Total: -37.10 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.20 Total: -3.21 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.71 -7.52 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.588 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds