Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 116.99872 * 2 1 4 4 C 1.38730 * 120.03184 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.97110 * 180.02562 * 4 3 2 6 6 C 1.38469 * 120.03042 * 359.97266 * 5 4 3 7 7 F 1.35100 * 119.97294 * 180.02562 * 6 5 4 8 8 C 1.38440 * 120.06088 * 359.79377 * 6 5 4 9 9 C 1.38163 * 120.02879 * 0.46149 * 8 6 5 10 10 C 1.50699 * 120.01953 * 179.79181 * 9 8 6 11 11 H 1.08998 * 109.47629 * 219.72860 * 10 9 8 12 12 C 1.52997 * 109.47156 * 99.72205 * 10 9 8 13 13 N 1.46904 * 109.46851 * 339.72653 * 10 9 8 14 14 C 1.46899 * 111.00029 * 204.99994 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00380 * 21 19 17 23 23 H 1.48503 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47402 * 300.00322 * 21 19 17 25 25 H 1.09004 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47426 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47412 * 60.00042 * 1 2 3 28 28 H 1.08004 * 120.00917 * 0.04079 * 4 3 2 29 29 H 1.07998 * 119.98160 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.98229 * 180.25273 * 8 6 5 31 31 H 1.08997 * 109.47489 * 60.00240 * 12 10 9 32 32 H 1.09007 * 109.47004 * 180.02562 * 12 10 9 33 33 H 1.09007 * 109.47280 * 300.00182 * 12 10 9 34 34 H 1.00908 * 110.99583 * 328.94906 * 13 10 9 35 35 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 36 36 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 37 37 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 38 38 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 39 39 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 40 40 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 41 41 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9195 3.6052 -0.0011 6 6 3.3023 3.6770 -0.0005 7 9 3.9157 4.8807 -0.0005 8 6 4.0570 2.5164 0.0049 9 6 3.4311 1.2846 0.0001 10 6 4.2528 0.0214 0.0013 11 1 3.7912 -0.7130 -0.6587 12 6 4.3208 -0.5415 1.4223 13 7 5.6108 0.3202 -0.4725 14 6 6.2440 -0.8757 -1.0441 15 6 7.6533 -0.5256 -1.5260 16 6 8.3131 -1.7713 -2.1207 17 6 9.7010 -1.4264 -2.5959 18 1 10.0753 -0.4194 -2.4845 19 6 10.4934 -2.3965 -3.1721 20 7 10.0379 -3.6228 -3.3074 21 14 12.2135 -1.9687 -3.7617 22 1 13.0218 -1.4788 -2.6163 23 1 12.8539 -3.1779 -4.3389 24 1 12.1321 -0.9093 -4.7991 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2126 2.3194 -0.0003 29 1 1.3320 4.5114 -0.0011 30 1 5.1354 2.5738 0.0095 31 1 3.3132 -0.7632 1.7740 32 1 4.9155 -1.4550 1.4232 33 1 4.7825 0.1929 2.0824 34 1 5.6028 1.0784 -1.1383 35 1 6.3027 -1.6544 -0.2837 36 1 5.6511 -1.2337 -1.8858 37 1 7.5944 0.2529 -2.2865 38 1 8.2465 -0.1674 -0.6846 39 1 8.3721 -2.5496 -1.3599 40 1 7.7201 -2.1299 -2.9621 41 1 10.5952 -4.3052 -3.7130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178645877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -72.384818 kcal Electronic energy + Delta-G solvation = -21419.179632 eV Core-core repulsion = 18020.339187 eV Total energy + Delta-G solvation = -3398.840445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.93797 -40.60757 -37.92466 -36.56479 -34.01637 -32.30349 -30.51227 -30.12856 -28.85860 -27.51860 -25.99537 -23.94825 -22.80135 -21.97437 -20.56335 -20.07316 -18.35801 -17.33215 -17.13309 -16.22151 -16.15613 -15.59503 -15.51398 -14.93602 -14.72541 -14.57690 -14.41519 -14.08862 -13.57170 -13.23857 -12.98159 -12.68450 -12.43475 -12.18809 -12.07015 -11.90934 -11.77699 -11.52614 -11.18198 -11.15516 -10.83187 -10.68512 -10.50906 -10.46689 -9.65101 -9.32310 -9.22979 -9.02100 -8.32103 -8.30048 -8.16098 -5.95597 -3.97570 0.89506 0.98209 2.95210 3.29556 3.36871 3.40680 3.43708 4.07176 4.20549 4.36045 4.50296 4.62746 4.69819 4.80657 4.86378 4.99360 5.13770 5.21180 5.40088 5.45328 5.47111 5.62297 5.78556 5.81067 5.86328 5.89558 5.97524 6.03013 6.12086 6.31575 6.41587 6.49847 6.76168 6.82670 7.03623 7.18224 7.36719 7.62321 7.72913 7.88396 8.05101 8.48380 9.09522 9.66176 11.15864 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003095 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.233902 B = 9045.204353 C = 9929.036149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.122 3.878 4 C -0.182 4.182 5 C -0.120 4.120 6 C 0.062 3.938 7 F -0.141 7.141 8 C -0.104 4.104 9 C -0.084 4.084 10 C 0.130 3.870 11 H 0.060 0.940 12 C -0.131 4.131 13 N -0.688 5.688 14 C 0.059 3.941 15 C -0.107 4.107 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.338 0.662 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.352 11.119 8.449 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.076 3.924 4 C -0.201 4.201 5 C -0.139 4.139 6 C 0.043 3.957 7 F -0.119 7.119 8 C -0.123 4.123 9 C -0.085 4.085 10 C 0.020 3.980 11 H 0.077 0.923 12 C -0.188 4.188 13 N -0.320 5.320 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.173 0.827 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.912 10.692 9.001 25.989 hybrid contribution 0.255 0.482 -1.241 1.356 sum -21.656 11.174 7.759 25.575 Atomic orbital electron populations 1.23095 0.78380 1.04215 1.01266 1.86143 1.21261 1.26222 1.88447 1.18821 0.91582 0.84545 0.97465 1.21012 1.00227 0.91285 1.07562 1.20887 0.92751 0.98612 1.01618 1.17567 0.90741 0.80731 1.06660 1.91499 1.83324 1.42829 1.94279 1.21010 1.01816 0.89655 0.99839 1.19260 0.90398 0.95565 1.03321 1.20267 0.87823 0.91986 0.97887 0.92257 1.21716 1.01175 1.01190 0.94761 1.60785 1.17258 1.09882 1.44088 1.22181 0.96267 0.91409 0.97050 1.21624 0.92797 1.00562 0.99526 1.19056 0.94894 0.91926 0.95645 1.21232 0.99517 0.95886 1.39096 0.92719 1.25029 0.98370 0.95051 0.96070 1.69959 1.37087 1.01852 1.44765 0.86658 0.84606 0.77649 0.79081 1.20216 1.21338 1.20280 0.88028 0.92603 0.92626 0.84573 0.84662 0.82707 0.92580 0.91976 0.92117 0.84298 0.91258 0.95631 0.93683 0.92498 0.96559 0.96828 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.14 9.64 -19.56 -0.19 -3.32 16 3 C 0.12 1.32 6.65 -39.23 -0.26 1.05 16 4 C -0.18 -1.62 9.04 -39.44 -0.36 -1.97 16 5 C -0.12 -1.12 10.02 -39.54 -0.40 -1.52 16 6 C 0.06 0.71 7.30 -39.42 -0.29 0.42 16 7 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 8 C -0.10 -1.24 8.85 -39.53 -0.35 -1.59 16 9 C -0.08 -1.02 5.00 -104.48 -0.52 -1.54 16 10 C 0.13 1.73 2.49 -68.86 -0.17 1.55 16 11 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 12 C -0.13 -1.64 9.39 37.16 0.35 -1.29 16 13 N -0.69 -10.23 5.61 -107.95 -0.61 -10.84 16 14 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 15 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 16 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 28 H 0.14 0.83 6.30 -52.48 -0.33 0.50 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.16 1.86 6.72 -52.49 -0.35 1.50 16 31 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.06 0.81 7.45 -51.92 -0.39 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.34 4.80 6.99 -39.29 -0.27 4.52 16 35 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 36 H 0.03 0.45 8.06 -51.93 -0.42 0.04 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -31.46 342.43 -7.85 -39.31 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.25 Total: -0.51 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.72 Total: -18.47 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.13 Total: -37.51 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.19 Total: -3.32 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.46 -7.85 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.074 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds