Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 116.99872 * 2 1 4 4 C 1.38730 * 120.03184 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.97110 * 180.02562 * 4 3 2 6 6 C 1.38469 * 120.03042 * 359.97266 * 5 4 3 7 7 F 1.35100 * 119.97294 * 180.02562 * 6 5 4 8 8 C 1.38440 * 120.06088 * 359.79377 * 6 5 4 9 9 C 1.38163 * 120.02879 * 0.46149 * 8 6 5 10 10 C 1.50699 * 120.01953 * 179.79181 * 9 8 6 11 11 H 1.08998 * 109.47629 * 219.72860 * 10 9 8 12 12 C 1.52997 * 109.47156 * 99.72205 * 10 9 8 13 13 N 1.46904 * 109.46851 * 339.72653 * 10 9 8 14 14 C 1.46899 * 111.00029 * 204.99994 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00380 * 21 19 17 23 23 H 1.48503 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47402 * 300.00322 * 21 19 17 25 25 H 1.09004 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47426 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47412 * 60.00042 * 1 2 3 28 28 H 1.08004 * 120.00917 * 0.04079 * 4 3 2 29 29 H 1.07998 * 119.98160 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.98229 * 180.25273 * 8 6 5 31 31 H 1.08997 * 109.47489 * 60.00240 * 12 10 9 32 32 H 1.09007 * 109.47004 * 180.02562 * 12 10 9 33 33 H 1.09007 * 109.47280 * 300.00182 * 12 10 9 34 34 H 1.00908 * 110.99583 * 328.94906 * 13 10 9 35 35 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 36 36 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 37 37 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 38 38 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 39 39 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 40 40 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 41 41 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9195 3.6052 -0.0011 6 6 3.3023 3.6770 -0.0005 7 9 3.9157 4.8807 -0.0005 8 6 4.0570 2.5164 0.0049 9 6 3.4311 1.2846 0.0001 10 6 4.2528 0.0214 0.0013 11 1 3.7912 -0.7130 -0.6587 12 6 4.3208 -0.5415 1.4223 13 7 5.6108 0.3202 -0.4725 14 6 6.2440 -0.8757 -1.0441 15 6 7.6533 -0.5256 -1.5260 16 6 8.3131 -1.7713 -2.1207 17 6 9.7010 -1.4264 -2.5959 18 1 10.0753 -0.4194 -2.4845 19 6 10.4934 -2.3965 -3.1721 20 7 10.0379 -3.6228 -3.3074 21 14 12.2135 -1.9687 -3.7617 22 1 13.0218 -1.4788 -2.6163 23 1 12.8539 -3.1779 -4.3389 24 1 12.1321 -0.9093 -4.7991 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2126 2.3194 -0.0003 29 1 1.3320 4.5114 -0.0011 30 1 5.1354 2.5738 0.0095 31 1 3.3132 -0.7632 1.7740 32 1 4.9155 -1.4550 1.4232 33 1 4.7825 0.1929 2.0824 34 1 5.6028 1.0784 -1.1383 35 1 6.3027 -1.6544 -0.2837 36 1 5.6511 -1.2337 -1.8858 37 1 7.5944 0.2529 -2.2865 38 1 8.2465 -0.1674 -0.6846 39 1 8.3721 -2.5496 -1.3599 40 1 7.7201 -2.1299 -2.9621 41 1 10.5952 -4.3052 -3.7130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178645877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -91.067994 kcal Electronic energy + Delta-G solvation = -21419.989796 eV Core-core repulsion = 18020.339187 eV Total energy + Delta-G solvation = -3399.650608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81474 -41.38451 -38.82935 -37.65153 -35.81730 -34.03302 -31.80830 -31.05466 -29.93631 -28.14785 -27.73213 -25.13801 -24.13006 -23.03396 -21.94950 -21.46620 -19.12131 -18.50000 -18.13670 -17.96492 -16.91539 -16.75386 -16.53888 -16.35242 -15.67868 -15.64657 -15.57144 -15.41042 -14.82848 -14.38396 -13.95626 -13.79555 -13.72646 -13.50618 -13.44997 -12.99220 -12.89562 -12.73672 -12.69106 -12.44912 -12.34402 -12.16419 -11.84459 -11.66270 -11.49582 -11.36037 -11.08751 -10.54352 -10.06244 -9.46672 -9.06492 -8.19564 -6.30700 0.10547 0.17736 1.40180 1.43648 1.51527 2.32343 2.41496 2.49805 3.08913 3.13360 3.25180 3.56592 3.80088 4.02710 4.15280 4.21979 4.27645 4.28924 4.42163 4.44007 4.53064 4.65952 4.69915 4.75643 4.78735 4.85178 4.95367 4.97506 5.07530 5.10978 5.14597 5.23507 5.26166 5.35024 5.52727 5.70377 5.75567 5.86332 6.05117 6.27427 6.33595 6.42997 6.86004 7.38408 8.92268 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003095 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.233902 B = 9045.204353 C = 9929.036149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.120 3.880 4 C -0.174 4.174 5 C -0.110 4.110 6 C 0.043 3.957 7 F -0.150 7.150 8 C -0.113 4.113 9 C -0.103 4.103 10 C 0.134 3.866 11 H 0.050 0.950 12 C -0.126 4.126 13 N -0.685 5.685 14 C 0.073 3.927 15 C -0.092 4.092 16 C 0.026 3.974 17 C -0.545 4.545 18 H 0.059 0.941 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.267 1.267 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.343 0.657 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.049 0.951 38 H 0.054 0.946 39 H -0.008 1.008 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.646 12.479 8.618 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.074 3.926 4 C -0.192 4.192 5 C -0.129 4.129 6 C 0.024 3.976 7 F -0.128 7.128 8 C -0.132 4.132 9 C -0.105 4.105 10 C 0.025 3.975 11 H 0.068 0.932 12 C -0.183 4.183 13 N -0.317 5.317 14 C -0.056 4.056 15 C -0.130 4.130 16 C -0.012 4.012 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.192 1.192 25 H 0.132 0.868 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.187 0.813 29 H 0.180 0.820 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.225 12.066 9.178 27.735 hybrid contribution 0.538 0.031 -1.278 1.387 sum -22.687 12.097 7.901 26.897 Atomic orbital electron populations 1.23412 0.76173 1.05683 1.02664 1.86124 1.23611 1.26126 1.88250 1.18934 0.91245 0.85565 0.96906 1.21349 1.01755 0.90177 1.05914 1.21215 0.91954 0.99964 0.99732 1.17754 0.91712 0.80173 1.07953 1.91472 1.83660 1.43213 1.94498 1.20939 1.01551 0.90116 1.00547 1.19133 0.91206 0.94714 1.05403 1.20201 0.86753 0.92785 0.97782 0.93242 1.21672 1.01714 1.00550 0.94396 1.60709 1.18626 1.08660 1.43716 1.21875 0.94479 0.92399 0.96820 1.21372 0.94384 0.98046 0.99207 1.18958 0.94474 0.93485 0.94258 1.21683 1.00798 0.96308 1.39490 0.92241 1.25999 1.03055 0.94818 0.96025 1.70094 1.38907 1.02974 1.45447 0.85492 0.78902 0.77723 0.78883 1.19163 1.20724 1.19158 0.86758 0.90938 0.91349 0.81272 0.82012 0.83639 0.91334 0.92933 0.92343 0.83775 0.91663 0.95998 0.93202 0.92708 0.98948 0.99138 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.08 9.64 -92.91 -0.90 -6.97 16 3 C 0.12 2.37 6.65 22.50 0.15 2.52 16 4 C -0.17 -2.55 9.04 22.36 0.20 -2.35 16 5 C -0.11 -1.77 10.02 22.30 0.22 -1.55 16 6 C 0.04 0.94 7.30 22.37 0.16 1.10 16 7 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 8 C -0.11 -2.65 8.85 22.30 0.20 -2.45 16 9 C -0.10 -2.44 5.00 -19.77 -0.10 -2.53 16 10 C 0.13 3.56 2.49 44.17 0.11 3.67 16 11 H 0.05 1.41 7.51 -2.39 -0.02 1.40 16 12 C -0.13 -3.12 9.39 71.98 0.68 -2.45 16 13 N -0.68 -20.54 5.61 -495.45 -2.78 -23.32 16 14 C 0.07 2.63 5.48 86.30 0.47 3.11 16 15 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 16 C 0.03 1.41 4.97 29.84 0.15 1.56 16 17 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 21 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.17 1.31 6.30 -2.91 -0.02 1.29 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 3.57 6.72 -2.91 -0.02 3.55 16 31 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 32 H 0.05 1.38 7.45 -2.38 -0.02 1.36 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.34 9.80 6.99 -89.69 -0.63 9.17 16 35 H 0.06 2.39 7.44 -2.39 -0.02 2.38 16 36 H 0.02 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.24 342.43 4.03 -64.22 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.39 Total: 12.66 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.22 Total: -33.27 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.49 Total: -81.06 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.90 Total: -6.97 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.24 4.03 -64.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.853 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds