Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35946 * 116.99824 * 2 1 4 4 C 1.38725 * 120.03217 * 0.19174 * 3 2 1 5 5 C 1.38133 * 119.97370 * 180.27028 * 4 3 2 6 6 C 1.38473 * 120.02503 * 359.76803 * 5 4 3 7 7 F 1.35099 * 119.96735 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.06076 * 0.02562 * 6 5 4 9 9 C 1.38170 * 120.03501 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.01990 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.47618 * 144.99693 * 10 9 8 12 12 C 1.53003 * 109.46664 * 264.99812 * 10 9 8 13 13 N 1.46903 * 109.47082 * 24.99049 * 10 9 8 14 14 C 1.46898 * 110.99673 * 155.00305 * 13 10 9 15 15 C 1.53006 * 109.47006 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99907 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99654 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 89.99986 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99494 * 21 19 17 24 24 H 1.48495 * 109.47280 * 329.99669 * 21 19 17 25 25 H 1.09002 * 109.47136 * 299.99734 * 1 2 3 26 26 H 1.09004 * 109.47290 * 59.99807 * 1 2 3 27 27 H 1.08999 * 109.46622 * 179.97438 * 1 2 3 28 28 H 1.08009 * 120.01211 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.98493 * 179.74979 * 5 4 3 30 30 H 1.08005 * 119.98052 * 179.97438 * 8 6 5 31 31 H 1.09005 * 109.46884 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.47165 * 299.99657 * 12 10 9 33 33 H 1.08995 * 109.47200 * 59.99625 * 12 10 9 34 34 H 1.00897 * 110.99542 * 31.05446 * 13 10 9 35 35 H 1.09001 * 109.47392 * 60.00807 * 14 13 10 36 36 H 1.09001 * 109.47520 * 300.00529 * 14 13 10 37 37 H 1.09001 * 109.47002 * 299.99782 * 15 14 13 38 38 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 39 39 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 40 40 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 41 41 H 0.96999 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3752 0.0040 5 6 1.9196 3.6053 -0.0016 6 6 3.3024 3.6770 -0.0064 7 9 3.9157 4.8808 -0.0125 8 6 4.0570 2.5164 -0.0061 9 6 3.4311 1.2846 -0.0005 10 6 4.2529 0.0214 -0.0008 11 1 3.7479 -0.7407 0.5927 12 6 4.4195 -0.4781 -1.4373 13 7 5.5746 0.2970 0.5782 14 6 6.1686 -0.9241 1.1387 15 6 7.5409 -0.5978 1.7316 16 6 8.1599 -1.8697 2.3148 17 6 9.5117 -1.5485 2.8982 18 1 9.8912 -0.5382 2.8575 19 6 10.2637 -2.5442 3.4849 20 7 11.4432 -2.2638 3.9945 21 14 9.6069 -4.2915 3.5559 22 1 10.0319 -5.0299 2.3396 23 1 10.1431 -4.9732 4.7614 24 1 8.1238 -4.2606 3.6233 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.2126 2.3194 0.0076 29 1 1.3320 4.5114 -0.0026 30 1 5.1355 2.5739 -0.0103 31 1 5.0143 -1.3916 -1.4376 32 1 3.4388 -0.6826 -1.8670 33 1 4.9245 0.2840 -2.0307 34 1 5.5195 1.0249 1.2747 35 1 6.2808 -1.6685 0.3504 36 1 5.5196 -1.3180 1.9208 37 1 8.1901 -0.2038 0.9497 38 1 7.4284 0.1464 2.5199 39 1 7.5108 -2.2642 3.0966 40 1 8.2723 -2.6137 1.5261 41 1 11.9723 -2.9644 4.4069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178645888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = -69.611003 kcal Electronic energy + Delta-G solvation = -21469.693691 eV Core-core repulsion = 18070.973528 eV Total energy + Delta-G solvation = -3398.720163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.95823 -40.64220 -37.96895 -36.64120 -34.11033 -32.31418 -30.70171 -30.20341 -29.03954 -27.55458 -26.32931 -23.98101 -22.72979 -21.87753 -20.63666 -20.01772 -18.39479 -17.39441 -17.16936 -16.63109 -16.19381 -15.65027 -15.55857 -14.96536 -14.75121 -14.67934 -14.28051 -14.09167 -13.65956 -13.26118 -13.01720 -12.75389 -12.57513 -12.42235 -12.17556 -12.04910 -11.89134 -11.69153 -11.29363 -11.22346 -10.89671 -10.83139 -10.68473 -9.91414 -9.69029 -9.56435 -9.27193 -9.12827 -8.49814 -8.35354 -8.24259 -6.00185 -3.97691 0.86009 0.95059 2.91137 3.26166 3.33544 3.40520 3.44503 4.04350 4.14895 4.32205 4.48832 4.58660 4.65823 4.76968 4.82254 4.95842 5.09854 5.15967 5.33796 5.38177 5.44405 5.57261 5.68386 5.75300 5.79478 5.84190 5.88053 5.96173 6.05146 6.19714 6.31841 6.46527 6.59535 6.63246 6.96126 6.99699 7.23742 7.38653 7.47450 7.57310 7.84599 8.59362 9.05691 9.62548 11.13467 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.003286 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.542926 B = 8518.937174 C = 9404.470488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.122 3.878 4 C -0.182 4.182 5 C -0.119 4.119 6 C 0.063 3.937 7 F -0.140 7.140 8 C -0.102 4.102 9 C -0.086 4.086 10 C 0.130 3.870 11 H 0.060 0.940 12 C -0.131 4.131 13 N -0.686 5.686 14 C 0.057 3.943 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.735 8.223 -10.362 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.076 3.924 4 C -0.201 4.201 5 C -0.138 4.138 6 C 0.043 3.957 7 F -0.119 7.119 8 C -0.121 4.121 9 C -0.087 4.087 10 C 0.020 3.980 11 H 0.077 0.923 12 C -0.189 4.189 13 N -0.319 5.319 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.150 7.923 -10.869 28.521 hybrid contribution -0.951 -0.637 0.943 1.483 sum -26.102 7.285 -9.926 28.860 Atomic orbital electron populations 1.23097 0.78343 1.04205 1.01303 1.86135 1.21298 1.26264 1.88485 1.18825 0.91604 0.84535 0.97477 1.21015 1.00238 0.91283 1.07561 1.20901 0.92772 0.98621 1.01480 1.17571 0.90737 0.80766 1.06610 1.91502 1.83316 1.42799 1.94261 1.21016 1.01843 0.89622 0.99626 1.19234 0.90327 0.95540 1.03600 1.20271 0.88132 0.92199 0.97371 0.92257 1.21724 1.01140 1.01497 0.94512 1.60731 1.21094 1.10790 1.39244 1.22204 0.96565 0.91102 0.97279 1.21445 0.93197 0.99760 0.99347 1.19540 0.96527 0.93483 0.95524 1.21164 1.00306 0.97303 1.36848 0.91017 1.25049 0.94697 0.98944 0.94940 1.69922 1.11528 1.33425 1.39570 0.86763 0.79770 0.85076 0.77571 1.20300 1.21465 1.19081 0.92595 0.92583 0.88048 0.84569 0.84629 0.82680 0.92045 0.92659 0.92003 0.84115 0.91289 0.95655 0.91888 0.93039 0.96872 0.97042 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.03 9.64 -19.57 -0.19 -3.22 16 3 C 0.12 1.27 6.66 -39.24 -0.26 1.01 16 4 C -0.18 -1.56 9.04 -39.44 -0.36 -1.92 16 5 C -0.12 -1.08 10.02 -39.53 -0.40 -1.48 16 6 C 0.06 0.69 7.30 -39.42 -0.29 0.40 16 7 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 8 C -0.10 -1.18 8.83 -39.54 -0.35 -1.52 16 9 C -0.09 -1.00 4.94 -104.48 -0.52 -1.51 16 10 C 0.13 1.64 2.54 -68.86 -0.18 1.46 16 11 H 0.06 0.79 7.35 -51.93 -0.38 0.41 16 12 C -0.13 -1.55 9.40 37.16 0.35 -1.20 16 13 N -0.69 -9.71 5.57 -107.95 -0.60 -10.31 16 14 C 0.06 0.94 5.48 -3.82 -0.02 0.92 16 15 C -0.10 -2.00 5.41 -26.73 -0.14 -2.14 16 16 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 17 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 21 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 25 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 26 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 27 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 0.80 6.30 -52.48 -0.33 0.46 16 29 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.16 1.80 6.97 -52.48 -0.37 1.44 16 31 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.34 4.62 7.26 -39.29 -0.29 4.34 16 35 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 36 H 0.03 0.41 8.06 -51.93 -0.42 0.00 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -31.97 339.24 -7.48 -39.45 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.24 Total: -0.26 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.71 Total: -18.90 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.17 Total: -37.97 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.19 Total: -3.22 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.97 -7.48 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.159 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds