Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.52998 * 109.46898 * 120.00339 * 2 1 3 5 5 C 1.52997 * 109.47691 * 65.57294 * 4 2 1 6 6 H 1.09001 * 109.46956 * 305.50684 * 5 4 2 7 7 N 1.46894 * 109.47388 * 185.50706 * 5 4 2 8 8 C 1.46897 * 111.00024 * 86.24800 * 7 5 4 9 9 C 1.53004 * 109.47216 * 185.15469 * 8 7 5 10 10 C 1.53005 * 109.47312 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47031 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99862 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00026 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99948 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46892 * 90.00340 * 15 13 11 17 17 H 1.48497 * 109.47435 * 210.00272 * 15 13 11 18 18 H 1.48499 * 109.47493 * 330.00797 * 15 13 11 19 19 C 1.50702 * 109.46975 * 65.50272 * 5 4 2 20 20 C 1.33381 * 125.20467 * 260.00348 * 19 5 4 21 21 C 1.38424 * 114.92473 * 179.75815 * 20 19 5 22 22 C 1.33391 * 114.91783 * 0.24779 * 21 20 19 23 23 S 1.75881 * 125.20083 * 80.14465 * 19 5 4 24 24 H 1.08998 * 109.47460 * 294.09877 * 1 2 3 25 25 H 1.09003 * 109.47337 * 54.09627 * 1 2 3 26 26 H 1.08999 * 109.47263 * 174.09693 * 1 2 3 27 27 H 1.09002 * 109.47031 * 239.99673 * 2 1 3 28 28 H 1.08993 * 109.47291 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47175 * 300.00468 * 3 2 1 30 30 H 1.09001 * 109.46818 * 59.99973 * 3 2 1 31 31 H 1.09001 * 109.47170 * 305.56648 * 4 2 1 32 32 H 1.09004 * 109.46773 * 185.57411 * 4 2 1 33 33 H 1.00902 * 111.00024 * 210.20217 * 7 5 4 34 34 H 1.08997 * 109.47302 * 305.15385 * 8 7 5 35 35 H 1.09000 * 109.47568 * 65.15893 * 8 7 5 36 36 H 1.09005 * 109.47062 * 299.99863 * 9 8 7 37 37 H 1.08999 * 109.47225 * 59.99963 * 9 8 7 38 38 H 1.09001 * 109.46709 * 300.00372 * 10 9 8 39 39 H 1.08999 * 109.46939 * 59.99869 * 10 9 8 40 40 H 0.97003 * 120.00183 * 179.97438 * 14 13 11 41 41 H 1.08005 * 122.54050 * 0.02562 * 20 19 5 42 42 H 1.07996 * 122.54614 * 180.22464 * 21 20 19 43 43 H 1.08003 * 125.20467 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6476 -2.1986 1.1812 6 1 0.5711 -2.2820 1.0315 7 7 2.0202 -2.8626 2.4373 8 6 0.9586 -2.7211 3.4427 9 6 1.4334 -3.3108 4.7723 10 6 0.3279 -3.1629 5.8197 11 6 0.7959 -3.7432 7.1293 12 1 1.7829 -4.1748 7.2068 13 6 -0.0365 -3.7241 8.2284 14 7 0.3720 -4.2300 9.3715 15 14 -1.7438 -2.9782 8.0942 16 1 -2.7124 -4.0286 7.6895 17 1 -2.1435 -2.4166 9.4095 18 1 -1.7330 -1.8966 7.0768 19 6 2.3669 -2.8569 0.0322 20 6 1.8347 -3.1106 -1.1642 21 6 2.6903 -3.7196 -2.0661 22 6 3.9158 -3.9650 -1.6002 23 16 4.0357 -3.4115 0.0650 24 1 -0.3634 0.4196 0.9381 25 1 -0.3634 0.6027 -0.8324 26 1 -0.3634 -1.0222 -0.1057 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.5974 -0.2683 2.1364 32 1 3.1254 -0.6357 1.3005 33 1 2.2426 -3.8342 2.2806 34 1 0.7237 -1.6652 3.5769 35 1 0.0676 -3.2518 3.1075 36 1 1.6684 -4.3668 4.6381 37 1 2.3245 -2.7801 5.1076 38 1 0.0934 -2.1068 5.9536 39 1 -0.5634 -3.6933 5.4846 40 1 -0.2134 -4.2163 10.1448 41 1 0.8147 -2.8562 -1.4121 42 1 2.3884 -3.9768 -3.0706 43 1 4.7126 -4.4326 -2.1598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178646786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = 1.859772 kcal Electronic energy + Delta-G solvation = -19680.955274 eV Core-core repulsion = 16851.547492 eV Total energy + Delta-G solvation = -2829.407782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.97490 -36.95659 -35.61741 -33.57103 -31.86209 -29.93984 -27.94668 -27.31945 -26.29793 -24.27556 -22.46878 -21.57677 -20.14879 -20.00759 -19.28032 -17.18006 -16.63176 -15.84075 -15.62122 -15.20158 -14.74858 -14.15406 -13.96298 -13.84908 -13.39846 -13.28859 -12.85015 -12.80276 -12.52025 -12.39905 -12.17849 -12.02882 -11.79761 -11.69886 -11.45579 -11.06541 -10.87750 -10.79952 -10.79533 -10.69692 -10.50339 -9.92916 -9.71236 -9.58089 -9.15080 -8.76136 -8.54170 -8.51136 -8.29840 -6.01365 -3.98925 0.88286 1.54901 1.97002 2.60604 3.31970 3.39328 3.43095 4.16886 4.47495 4.50630 4.82227 4.85275 4.92488 4.98079 5.22790 5.32440 5.32714 5.40369 5.43266 5.51257 5.58241 5.64919 5.67697 5.75709 5.80327 5.89519 5.91514 5.96359 6.08459 6.14971 6.17972 6.26589 6.31039 6.35115 6.56950 6.59377 6.94004 7.17800 7.37781 7.44030 7.53625 7.83192 8.58139 9.04501 9.61309 11.12274 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003683 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.812470 B = 7600.300196 C = 8497.652455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.099 4.099 5 C 0.154 3.846 6 H 0.063 0.937 7 N -0.686 5.686 8 C 0.058 3.942 9 C -0.098 4.098 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.170 4.170 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.230 4.230 23 S 0.137 5.863 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.341 0.659 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 6.120 -25.503 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.137 4.137 5 C 0.042 3.958 6 H 0.080 0.920 7 N -0.317 5.317 8 C -0.071 4.071 9 C -0.136 4.136 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.288 4.288 20 C -0.174 4.174 21 C -0.166 4.166 22 C -0.366 4.366 23 S 0.400 5.600 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.246 6.614 -23.990 25.432 hybrid contribution -2.717 -0.383 -1.414 3.086 sum 2.530 6.232 -25.404 26.279 Atomic orbital electron populations 1.21900 0.95490 1.01487 1.01753 1.21143 0.95695 0.96146 0.98751 1.21813 1.00937 0.95972 1.01553 1.21655 1.01734 0.92668 0.97644 1.20126 0.96419 0.93876 0.85355 0.91976 1.60649 1.43311 1.19963 1.07792 1.22203 0.91227 1.01035 0.92617 1.21425 1.00193 0.99713 0.92248 1.19542 0.94163 0.96603 0.94742 1.21155 1.02794 1.38605 0.93060 0.91014 1.25042 0.98312 0.94967 0.95269 1.69917 1.36972 1.46269 1.01244 0.86771 0.84970 0.80096 0.77392 1.20392 1.21414 1.19043 1.24730 0.97989 1.06499 0.99622 1.20076 1.01387 1.03023 0.92942 1.20100 0.93248 1.02206 1.01051 1.25744 1.01785 1.09547 0.99554 1.84574 1.09777 1.56584 1.09024 0.92544 0.92959 0.92821 0.91025 0.92755 0.92978 0.92647 0.90985 0.91242 0.84002 0.91317 0.95660 0.93028 0.91878 0.96658 0.97339 0.92794 0.84724 0.84731 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.82 37.16 0.33 -1.02 16 2 C -0.10 -0.94 2.81 -90.62 -0.25 -1.19 16 3 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 4 C -0.10 -1.11 4.38 -26.73 -0.12 -1.23 16 5 C 0.15 1.82 2.40 -68.87 -0.17 1.66 16 6 H 0.06 0.74 6.15 -51.93 -0.32 0.42 16 7 N -0.69 -9.62 6.09 -107.96 -0.66 -10.28 16 8 C 0.06 0.93 5.45 -3.82 -0.02 0.91 16 9 C -0.10 -1.96 5.46 -26.73 -0.15 -2.10 16 10 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 12 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 15 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 19 C -0.17 -1.88 4.38 -36.00 -0.16 -2.04 16 20 C -0.14 -1.43 9.17 -41.21 -0.38 -1.81 16 21 C -0.14 -1.24 10.18 -41.21 -0.42 -1.66 16 22 C -0.23 -2.13 11.23 29.04 0.33 -1.80 16 23 S 0.14 1.46 22.85 -107.50 -2.46 -0.99 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 6.75 -51.93 -0.35 0.13 16 27 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.89 7.38 -51.93 -0.38 0.50 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.34 4.74 8.15 -39.29 -0.32 4.42 16 34 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -30.45 354.64 -10.39 -40.85 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.52 Total: 0.50 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -1.21 Total: -25.20 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.12 Total: -37.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.46 Total: -0.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.45 -10.39 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178646786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.706 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds