Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 C 1.52994 * 109.47176 * 120.00196 * 2 1 3 5 5 C 1.53001 * 109.47191 * 65.86459 * 4 2 1 6 6 H 1.09007 * 109.46861 * 304.58230 * 5 4 2 7 7 N 1.46898 * 109.47208 * 64.58335 * 5 4 2 8 8 C 1.46907 * 110.99975 * 204.99889 * 7 5 4 9 9 C 1.52997 * 109.47182 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47270 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46929 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00236 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99479 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99722 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47122 * 90.00154 * 15 13 11 17 17 H 1.48500 * 109.47564 * 209.99996 * 15 13 11 18 18 H 1.48503 * 109.47660 * 330.00581 * 15 13 11 19 19 C 1.50700 * 109.47121 * 184.58514 * 5 4 2 20 20 C 1.33388 * 125.20429 * 99.99815 * 19 5 4 21 21 C 1.38426 * 114.92534 * 179.97438 * 20 19 5 22 22 C 1.33394 * 114.91500 * 359.97438 * 21 20 19 23 23 S 1.75884 * 125.20263 * 279.69140 * 19 5 4 24 24 H 1.09007 * 109.47164 * 299.99624 * 1 2 3 25 25 H 1.08998 * 109.47236 * 59.99641 * 1 2 3 26 26 H 1.09007 * 109.47374 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46643 * 240.00359 * 2 1 3 28 28 H 1.08999 * 109.47230 * 60.38139 * 3 2 1 29 29 H 1.08996 * 109.46853 * 180.38539 * 3 2 1 30 30 H 1.08998 * 109.47142 * 300.38007 * 3 2 1 31 31 H 1.09001 * 109.47067 * 305.86249 * 4 2 1 32 32 H 1.09000 * 109.46917 * 185.86374 * 4 2 1 33 33 H 1.00895 * 110.99936 * 81.04743 * 7 5 4 34 34 H 1.09001 * 109.47303 * 300.00253 * 8 7 5 35 35 H 1.08995 * 109.46729 * 60.00128 * 8 7 5 36 36 H 1.09001 * 109.47111 * 300.00251 * 9 8 7 37 37 H 1.09001 * 109.46865 * 59.99799 * 9 8 7 38 38 H 1.09001 * 109.46610 * 299.99571 * 10 9 8 39 39 H 1.08995 * 109.46979 * 59.99802 * 10 9 8 40 40 H 0.97005 * 119.99603 * 179.97438 * 14 13 11 41 41 H 1.08004 * 122.53918 * 0.02562 * 20 19 5 42 42 H 1.07992 * 122.54387 * 180.02562 * 21 20 19 43 43 H 1.07996 * 125.19938 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6539 -2.2000 1.1776 6 1 0.5759 -2.2879 1.0417 7 7 2.3434 -2.8319 0.0448 8 6 1.6057 -4.0104 -0.4295 9 6 2.3532 -4.6403 -1.6065 10 6 1.5846 -5.8674 -2.1009 11 6 2.3213 -6.4882 -3.2599 12 1 3.2450 -6.0510 -3.6091 13 6 1.8159 -7.6143 -3.8743 14 7 0.6908 -8.1463 -3.4492 15 14 2.7286 -8.3834 -5.3112 16 1 3.6896 -9.3951 -4.8028 17 1 1.7558 -9.0386 -6.2220 18 1 3.4663 -7.3281 -6.0511 19 6 2.0565 -2.8868 2.4572 20 6 1.2349 -3.1710 3.4688 21 6 1.8315 -3.8072 4.5438 22 6 3.1375 -4.0401 4.4048 23 16 3.6802 -3.4430 2.8419 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6823 1.9544 0.8934 29 1 3.1299 1.4425 -0.0069 30 1 1.6711 1.9583 -0.8865 31 1 1.5935 -0.2716 2.1361 32 1 3.1249 -0.6312 1.3032 33 1 3.2924 -3.0731 0.2881 34 1 1.5232 -4.7370 0.3788 35 1 0.6086 -3.7097 -0.7509 36 1 2.4361 -3.9139 -2.4149 37 1 3.3503 -4.9410 -1.2846 38 1 1.5015 -6.5939 -1.2926 39 1 0.5878 -5.5663 -2.4229 40 1 0.3351 -8.9384 -3.8818 41 1 0.1836 -2.9242 3.4503 42 1 1.2811 -4.0941 5.4275 43 1 3.7651 -4.5241 5.1384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178646797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -2.342824 kcal Electronic energy + Delta-G solvation = -19699.865265 eV Core-core repulsion = 16870.275245 eV Total energy + Delta-G solvation = -2829.590020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.77966 -37.00714 -35.39030 -33.50025 -31.77772 -29.62096 -27.93156 -27.16096 -25.77431 -24.21727 -22.53786 -21.77634 -20.29461 -19.61479 -19.28580 -17.34543 -16.31451 -15.75864 -15.26800 -14.75560 -14.65370 -14.31900 -14.16697 -13.85918 -13.36004 -13.00153 -12.71636 -12.55163 -12.29291 -12.25240 -12.16909 -11.88246 -11.62426 -11.53794 -11.39775 -10.88723 -10.84888 -10.68783 -10.55087 -10.53963 -10.47879 -10.40922 -9.67543 -9.31910 -9.03070 -8.67901 -8.53208 -8.31188 -8.25111 -5.96298 -3.98162 0.94678 1.56327 1.94983 2.69090 3.34487 3.40506 3.44402 4.36279 4.51282 4.53280 4.95234 4.98815 5.00448 5.10229 5.33371 5.39583 5.42182 5.48738 5.50398 5.61638 5.76649 5.78885 5.80280 5.88592 5.94027 5.97382 6.00799 6.03095 6.20241 6.24371 6.35304 6.37365 6.39334 6.56137 6.75072 6.79649 7.16638 7.31288 7.56026 7.72310 7.87482 8.04336 8.47627 9.09031 9.65645 11.15182 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004054 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.440689 B = 6904.255872 C = 8163.479086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.095 4.095 5 C 0.152 3.848 6 H 0.096 0.904 7 N -0.675 5.675 8 C 0.059 3.941 9 C -0.106 4.106 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.195 4.195 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.220 4.220 23 S 0.101 5.899 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.336 0.664 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 15.607 15.372 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.133 4.133 5 C 0.039 3.961 6 H 0.114 0.886 7 N -0.305 5.305 8 C -0.070 4.070 9 C -0.144 4.144 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.314 4.314 20 C -0.173 4.173 21 C -0.163 4.163 22 C -0.355 4.355 23 S 0.364 5.636 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.125 15.903 14.103 21.484 hybrid contribution -0.746 -1.388 0.877 1.803 sum 2.379 14.515 14.979 20.993 Atomic orbital electron populations 1.21875 0.95782 1.01719 1.01067 1.21043 0.95379 0.95267 0.99402 1.21838 1.00818 0.96472 1.01188 1.21625 1.01071 0.92747 0.97854 1.20380 0.99604 0.93191 0.82906 0.88587 1.60792 1.05493 1.30903 1.33291 1.22179 0.97929 0.89431 0.97446 1.21618 0.98577 0.98809 0.95429 1.19054 0.95382 0.91245 0.95795 1.21257 1.08141 1.10857 1.15340 0.92687 1.25023 0.95030 0.97084 0.97355 1.69973 1.19918 1.22069 1.41670 0.86607 0.79539 0.79438 0.82499 1.20725 1.21254 1.19848 1.25770 0.96449 1.06808 1.02392 1.20118 1.01017 1.02529 0.93587 1.20168 0.94174 1.01762 1.00242 1.25596 0.99529 1.09405 1.00996 1.84259 1.10038 1.56642 1.12613 0.93385 0.92943 0.92491 0.89166 0.93309 0.92910 0.92907 0.91983 0.91909 0.84562 0.95584 0.91362 0.92526 0.93702 0.96862 0.96601 0.93081 0.84496 0.84529 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.97 37.16 0.33 -1.17 16 2 C -0.09 -0.99 2.86 -90.62 -0.26 -1.24 16 3 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 4 C -0.09 -1.02 4.33 -26.73 -0.12 -1.13 16 5 C 0.15 1.87 2.29 -68.87 -0.16 1.71 16 6 H 0.10 1.21 6.03 -51.92 -0.31 0.90 16 7 N -0.67 -9.78 5.58 -107.95 -0.60 -10.39 16 8 C 0.06 1.03 5.48 -3.82 -0.02 1.00 16 9 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.19 -2.41 5.21 -36.00 -0.19 -2.60 16 20 C -0.14 -1.65 10.04 -41.21 -0.41 -2.07 16 21 C -0.13 -1.44 10.18 -41.21 -0.42 -1.86 16 22 C -0.22 -2.38 11.23 29.04 0.33 -2.05 16 23 S 0.10 1.21 22.03 -107.50 -2.37 -1.16 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 27 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.34 4.86 7.30 -39.29 -0.29 4.57 16 34 H 0.03 0.48 8.00 -51.93 -0.42 0.06 16 35 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -30.13 359.76 -10.73 -40.86 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.63 Total: 1.00 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -1.27 Total: -26.06 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.13 Total: -37.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.37 Total: -1.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.13 -10.73 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178646797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.516 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds