Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46896 * 2 1 4 4 C 1.46903 * 111.00237 * 302.06267 * 3 2 1 5 5 C 1.50702 * 109.47056 * 288.69325 * 4 3 2 6 6 C 1.33387 * 125.20535 * 95.45787 * 5 4 3 7 7 C 1.38420 * 114.92036 * 179.97438 * 6 5 4 8 8 C 1.33386 * 114.92451 * 0.02562 * 7 6 5 9 9 S 1.75888 * 125.19986 * 275.14958 * 5 4 3 10 10 C 1.46904 * 111.00184 * 66.01630 * 3 2 1 11 11 C 1.52997 * 109.46779 * 86.95712 * 10 3 2 12 12 C 1.52995 * 109.47472 * 296.06224 * 11 10 3 13 13 C 1.53004 * 109.47177 * 56.06430 * 11 10 3 14 14 C 1.52998 * 109.46741 * 176.06280 * 11 10 3 15 15 C 1.50707 * 109.47130 * 179.97438 * 14 11 10 16 16 H 1.07997 * 119.99627 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00243 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00115 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46863 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46881 * 120.00659 * 19 17 15 22 22 H 1.48502 * 109.47160 * 240.00314 * 19 17 15 23 23 H 1.09003 * 109.47134 * 185.19447 * 1 2 3 24 24 H 1.08994 * 109.47440 * 305.19995 * 1 2 3 25 25 H 1.09009 * 109.47005 * 65.19728 * 1 2 3 26 26 H 1.09002 * 109.47094 * 240.00127 * 2 1 3 27 27 H 1.08997 * 109.47104 * 119.99454 * 2 1 3 28 28 H 1.09004 * 109.46670 * 48.68870 * 4 3 2 29 29 H 1.08993 * 109.47371 * 168.68573 * 4 3 2 30 30 H 1.07998 * 122.54282 * 359.95979 * 6 5 4 31 31 H 1.08005 * 122.54130 * 180.02562 * 7 6 5 32 32 H 1.07998 * 125.20882 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47263 * 206.96031 * 10 3 2 34 34 H 1.09004 * 109.46633 * 326.95855 * 10 3 2 35 35 H 1.09004 * 109.46874 * 70.45744 * 12 11 10 36 36 H 1.09001 * 109.47596 * 190.46115 * 12 11 10 37 37 H 1.09004 * 109.47117 * 310.46118 * 12 11 10 38 38 H 1.09004 * 109.46743 * 59.99854 * 13 11 10 39 39 H 1.08998 * 109.46759 * 179.97438 * 13 11 10 40 40 H 1.08999 * 109.47145 * 299.99959 * 13 11 10 41 41 H 1.08999 * 109.47645 * 299.99865 * 14 11 10 42 42 H 1.08998 * 109.47517 * 60.00011 * 14 11 10 43 43 H 0.97001 * 119.99748 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5087 2.1241 -1.1622 5 6 2.1860 1.6247 -2.4124 6 6 1.6949 0.6961 -3.2345 7 6 2.4965 0.3980 -4.3229 8 6 3.6388 1.0840 -4.3845 9 16 3.7415 2.1827 -3.0148 10 6 1.6695 2.0672 1.2530 11 6 2.7545 1.8017 2.2986 12 6 2.7957 0.3070 2.6226 13 6 4.1124 2.2417 1.7475 14 6 2.4405 2.5910 3.5711 15 6 3.5088 2.3290 4.6012 16 1 4.3299 1.6662 4.3711 17 6 3.4387 2.9362 5.8370 18 7 2.4391 3.7437 6.1171 19 14 4.7633 2.6120 7.1136 20 1 5.7701 1.6742 6.5550 21 1 5.4256 3.8909 7.4754 22 1 4.1473 2.0136 8.3251 23 1 -0.3633 -1.0235 0.0930 24 1 -0.3634 0.5923 0.8397 25 1 -0.3633 0.4311 -0.9330 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.4328 1.9707 -1.2459 29 1 1.7155 3.1868 -1.0367 30 1 0.7441 0.2133 -3.0638 31 1 2.2182 -0.3346 -5.0661 32 1 4.3841 0.9841 -5.1596 33 1 1.5924 3.1396 1.0737 34 1 0.7138 1.6901 1.6172 35 1 3.1982 -0.2388 1.7692 36 1 3.4311 0.1411 3.4926 37 1 1.7870 -0.0462 2.8369 38 1 4.0830 3.3066 1.5167 39 1 4.8852 2.0529 2.4926 40 1 4.3361 1.6794 0.8409 41 1 2.4112 3.6558 3.3403 42 1 1.4731 2.2776 3.9636 43 1 2.3895 4.1707 6.9866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179721411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = 30.517090 kcal Electronic energy + Delta-G solvation = -20554.166878 eV Core-core repulsion = 17726.001770 eV Total energy + Delta-G solvation = -2828.165107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.09153 -37.52501 -35.27602 -32.26316 -31.10363 -29.49642 -27.06264 -26.29145 -26.09702 -25.10954 -23.18773 -22.72888 -20.33680 -19.21930 -17.86588 -16.93623 -16.14930 -15.75780 -15.49347 -15.30064 -14.45434 -13.83813 -13.77932 -13.11144 -13.01232 -12.83317 -12.72706 -12.51259 -12.40211 -12.16022 -11.93971 -11.74296 -11.45498 -11.23140 -10.96092 -10.86082 -10.68932 -10.65928 -10.55195 -10.31108 -10.18166 -9.89982 -9.56996 -8.95129 -8.83206 -8.67455 -8.42621 -8.29030 -7.88985 -5.93694 -3.93162 1.00781 1.68591 2.08100 2.71745 3.34279 3.42210 3.46029 4.27354 4.52368 4.85159 5.01734 5.13059 5.21712 5.37409 5.42333 5.47422 5.51296 5.54565 5.65174 5.68589 5.83739 6.01468 6.04225 6.08848 6.14848 6.24968 6.27018 6.37668 6.45958 6.47750 6.61478 6.77399 6.86946 6.91927 7.27680 7.27792 7.31971 7.41049 7.52273 7.74710 7.90015 8.07316 8.52465 9.12566 9.69523 11.18063 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.003942 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.448732 B = 7100.571406 C = 7550.822635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.032 3.968 3 N -0.522 5.522 4 C 0.113 3.887 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.134 4.134 8 C -0.229 4.229 9 S 0.122 5.878 10 C 0.060 3.940 11 C -0.050 4.050 12 C -0.132 4.132 13 C -0.115 4.115 14 C 0.033 3.967 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.013 0.987 42 H 0.012 0.988 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -6.030 -19.541 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.096 4.096 3 N -0.244 5.244 4 C -0.017 4.017 5 C -0.265 4.265 6 C -0.180 4.180 7 C -0.165 4.165 8 C -0.365 4.365 9 S 0.385 5.615 10 C -0.067 4.067 11 C -0.050 4.050 12 C -0.188 4.188 13 C -0.172 4.172 14 C -0.005 4.005 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.517 -4.861 -18.950 19.570 hybrid contribution -1.307 -1.139 0.310 1.761 sum -1.824 -6.000 -18.640 19.667 Atomic orbital electron populations 1.22445 0.98963 1.02079 1.01689 1.22596 0.92415 0.90852 1.03749 1.62202 1.58810 1.01951 1.01479 1.20686 0.96253 0.97963 0.86749 1.24474 0.98526 1.02608 1.00930 1.20070 1.02055 1.00095 0.95777 1.20083 0.94636 1.02129 0.99675 1.25625 1.02865 1.04217 1.03803 1.84441 1.18983 1.40007 1.18055 1.22456 0.98011 0.97464 0.88767 1.20540 0.93898 0.95783 0.94812 1.21969 1.00364 0.95960 1.00557 1.21583 0.96967 0.99318 0.99344 1.19132 0.96656 0.94531 0.90132 1.21284 1.08600 1.26589 0.97728 0.92199 1.25010 0.95672 0.95462 0.98468 1.69978 1.30887 1.30808 1.22177 0.86626 0.82180 0.77969 0.81784 1.19753 1.21193 1.21229 0.92435 0.92007 0.92991 0.91353 0.88499 0.92552 0.89994 0.84912 0.84879 0.82385 0.91918 0.94017 0.93795 0.91772 0.94513 0.94604 0.92878 0.93591 0.96836 0.97013 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.21 37.16 0.34 -1.91 16 2 C 0.03 0.41 5.43 -3.82 -0.02 0.39 16 3 N -0.52 -7.49 3.54 -236.06 -0.84 -8.33 16 4 C 0.11 1.43 5.24 -4.97 -0.03 1.40 16 5 C -0.15 -1.78 5.44 -36.00 -0.20 -1.97 16 6 C -0.15 -1.63 9.17 -41.21 -0.38 -2.01 16 7 C -0.13 -1.35 10.18 -41.21 -0.42 -1.77 16 8 C -0.23 -2.33 11.23 29.04 0.33 -2.00 16 9 S 0.12 1.43 23.33 -107.50 -2.51 -1.08 16 10 C 0.06 1.01 4.06 -3.82 -0.02 0.99 16 11 C -0.05 -0.99 0.60 -154.51 -0.09 -1.08 16 12 C -0.13 -2.47 6.81 37.15 0.25 -2.22 16 13 C -0.11 -2.25 8.00 37.16 0.30 -1.95 16 14 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 15 C -0.50 -13.78 7.51 -34.44 -0.26 -14.04 16 16 H 0.06 1.61 5.74 -52.49 -0.30 1.31 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.80 6.09 -51.93 -0.32 0.48 16 25 H 0.05 0.55 6.43 -51.92 -0.33 0.22 16 26 H 0.07 0.87 6.86 -51.93 -0.36 0.52 16 27 H 0.10 1.38 4.16 -51.93 -0.22 1.16 16 28 H 0.06 0.66 5.81 -51.93 -0.30 0.36 16 29 H 0.08 1.05 7.63 -51.93 -0.40 0.66 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.06 1.07 7.46 -51.93 -0.39 0.68 16 34 H 0.04 0.70 5.75 -51.93 -0.30 0.41 16 35 H 0.04 0.74 6.16 -51.93 -0.32 0.42 16 36 H 0.06 1.34 6.34 -51.93 -0.33 1.01 16 37 H 0.04 0.66 7.77 -51.93 -0.40 0.26 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 40 H 0.05 0.83 7.50 -51.93 -0.39 0.44 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -29.07 338.76 -9.71 -38.77 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.79 Total: -0.97 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -0.40 Total: -24.01 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.10 Total: -34.47 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.07 -9.71 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179721411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.292 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds