Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 C 1.53007 * 109.47041 * 300.81614 * 3 2 1 5 5 C 1.52999 * 109.46857 * 294.94047 * 4 3 2 6 6 C 1.52997 * 109.47663 * 60.81268 * 3 2 1 7 7 N 1.46500 * 109.46766 * 65.00163 * 6 3 2 8 8 C 1.39925 * 119.99934 * 180.02562 * 7 6 3 9 9 C 1.38721 * 120.07999 * 359.97438 * 8 7 6 10 10 C 1.38214 * 120.01667 * 180.02562 * 9 8 7 11 11 C 1.38529 * 120.17505 * 359.97438 * 10 9 8 12 12 F 1.35107 * 119.91843 * 180.02562 * 11 10 9 13 13 C 1.38355 * 120.16387 * 0.02562 * 11 10 9 14 14 C 1.38723 * 119.97977 * 359.97438 * 13 11 10 15 15 O 1.35790 * 120.09037 * 180.27483 * 14 13 11 16 16 C 1.34805 * 116.99913 * 355.70954 * 15 14 13 17 17 H 1.08004 * 119.99753 * 5.03328 * 16 15 14 18 18 C 1.38622 * 120.00208 * 185.03165 * 16 15 14 19 19 N 1.31578 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46940 * 90.00057 * 20 18 16 22 22 H 1.48501 * 109.47208 * 209.99767 * 20 18 16 23 23 H 1.48503 * 109.47016 * 330.00088 * 20 18 16 24 24 H 1.08999 * 109.47404 * 298.67363 * 1 2 3 25 25 H 1.09001 * 109.46740 * 58.67265 * 1 2 3 26 26 H 1.09002 * 109.47011 * 178.67475 * 1 2 3 27 27 H 1.08996 * 109.46974 * 239.99282 * 2 1 3 28 28 H 1.09002 * 109.46639 * 119.99674 * 2 1 3 29 29 H 1.08993 * 109.47419 * 180.81989 * 3 2 1 30 30 H 1.09006 * 109.46977 * 54.93611 * 4 3 2 31 31 H 1.08995 * 109.47065 * 174.93788 * 4 3 2 32 32 H 1.09005 * 109.47253 * 65.86243 * 5 4 3 33 33 H 1.09001 * 109.47478 * 185.86658 * 5 4 3 34 34 H 1.08997 * 109.47362 * 305.86470 * 5 4 3 35 35 H 1.08999 * 109.47453 * 305.00450 * 6 3 2 36 36 H 1.08998 * 109.47334 * 184.99958 * 6 3 2 37 37 H 0.97002 * 120.00348 * 0.02562 * 7 6 3 38 38 H 1.07997 * 119.99196 * 0.04911 * 9 8 7 39 39 H 1.08001 * 119.91489 * 180.02562 * 10 9 8 40 40 H 1.07996 * 120.00925 * 180.02562 * 13 11 10 41 41 H 0.97003 * 119.99827 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5133 2.1696 -1.2389 5 6 2.1077 1.5314 -2.4960 6 6 1.5469 2.1579 1.2593 7 7 2.1470 1.5347 2.4415 8 6 1.8434 2.0199 3.7183 9 6 0.9748 3.0914 3.8666 10 6 0.6763 3.5700 5.1284 11 6 1.2420 2.9821 6.2479 12 9 0.9462 3.4538 7.4789 13 6 2.1092 1.9131 6.1086 14 6 2.4135 1.4274 4.8453 15 8 3.2600 0.3748 4.7063 16 6 3.8402 -0.0963 5.8282 17 1 3.5622 0.3079 6.7905 18 6 4.7934 -1.0994 5.7469 19 7 5.1323 -1.5915 4.5746 20 14 5.5968 -1.7527 7.3017 21 1 4.8027 -2.8919 7.8281 22 1 6.9748 -2.2112 6.9917 23 1 5.6514 -0.6744 8.3213 24 1 -0.3634 0.4931 0.9016 25 1 -0.3633 0.5343 -0.8779 26 1 -0.3633 -1.0274 -0.0238 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1298 1.4425 -0.0147 30 1 0.4265 2.0919 -1.2712 31 1 1.8013 3.2198 -1.1936 32 1 1.7357 0.5118 -2.5965 33 1 1.8164 2.1125 -3.3710 34 1 3.1946 1.5154 -2.4161 35 1 0.4613 2.0807 1.3195 36 1 1.8347 3.2083 1.2167 37 1 2.7548 0.7856 2.3393 38 1 0.5315 3.5514 2.9958 39 1 -0.0005 4.4040 5.2419 40 1 2.5485 1.4565 6.9831 41 1 5.7990 -2.2937 4.5178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181540590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -67.208451 kcal Electronic energy + Delta-G solvation = -22141.690685 eV Core-core repulsion = 18743.074704 eV Total energy + Delta-G solvation = -3398.615981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.02483 -39.27449 -37.97051 -36.31848 -33.92567 -32.28607 -31.15922 -29.25910 -29.06121 -26.60038 -25.38515 -24.27689 -23.12801 -21.63350 -20.88861 -18.99609 -18.15607 -17.51644 -16.21915 -15.88807 -15.62744 -15.13663 -14.93006 -14.76847 -14.25484 -14.08474 -13.88586 -13.56685 -13.27974 -13.19966 -12.95917 -12.59739 -12.46308 -12.12635 -11.96331 -11.89113 -11.52259 -11.38638 -11.28102 -11.07965 -10.81337 -10.58248 -10.44905 -10.44661 -10.29889 -10.23984 -9.56335 -9.17190 -8.84704 -7.71944 -6.48141 -6.39955 -4.02734 2.14936 2.26421 3.12529 3.14218 3.18677 3.93468 4.05741 4.49382 4.81772 4.85207 4.93886 4.99986 5.09559 5.23648 5.30393 5.34857 5.43958 5.57956 5.61666 5.68108 5.73673 5.78128 5.85286 5.88359 5.92322 6.03196 6.11974 6.15229 6.21817 6.31806 6.42072 6.45424 6.56277 6.62142 6.84008 7.05048 7.12545 7.26709 7.64962 7.93860 8.08194 8.46115 8.98926 9.65389 10.69996 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.005536 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.535010 B = 5056.878424 C = 6951.940582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.118 4.118 5 C -0.152 4.152 6 C 0.135 3.865 7 N -0.743 5.743 8 C 0.155 3.845 9 C -0.148 4.148 10 C -0.195 4.195 11 C 0.084 3.916 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.120 3.880 15 O -0.176 6.176 16 C -0.386 4.386 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.408 0.592 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 5.357 -9.516 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.118 4.118 4 C -0.156 4.156 5 C -0.209 4.209 6 C 0.010 3.990 7 N -0.378 5.378 8 C 0.054 3.946 9 C -0.172 4.172 10 C -0.215 4.215 11 C 0.063 3.937 12 F -0.137 7.137 13 C -0.263 4.263 14 C 0.065 3.935 15 O -0.081 6.081 16 C -0.462 4.462 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.499 5.499 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.244 0.756 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.495 5.154 -9.893 12.908 hybrid contribution 0.594 -0.487 1.097 1.339 sum -5.901 4.667 -8.796 11.575 Atomic orbital electron populations 1.21871 0.96126 1.01363 1.01777 1.21542 0.96078 0.95899 1.02337 1.21392 1.00912 0.95570 0.93886 1.21547 1.00877 0.99284 0.93918 1.21789 1.01062 1.00879 0.97168 1.21262 0.97337 0.95972 0.84447 1.44365 1.53283 1.38798 1.01304 1.17109 0.98263 0.95485 0.83772 1.19919 1.02181 0.98499 0.96577 1.20291 1.06093 1.03835 0.91269 1.17227 1.00573 0.96848 0.79055 1.91376 1.92530 1.88075 1.41747 1.20786 1.05734 1.01315 0.98430 1.18610 0.93782 0.90076 0.91036 1.83889 1.51059 1.38462 1.34653 1.21285 1.20583 1.19420 0.84921 0.89140 1.25228 0.96196 0.96276 0.98679 1.70022 1.30630 1.26001 1.23275 0.85728 0.78498 0.79327 0.80029 1.19903 1.20296 1.19165 0.92215 0.92790 0.93160 0.92047 0.91188 0.90583 0.91432 0.92039 0.92517 0.93066 0.92709 0.92688 0.93327 0.75565 0.86242 0.86622 0.84503 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.22 37.16 0.34 -1.41 16 2 C -0.12 -1.50 5.33 -26.73 -0.14 -1.64 16 3 C -0.10 -1.18 2.20 -90.62 -0.20 -1.38 16 4 C -0.12 -1.14 5.17 -26.73 -0.14 -1.28 16 5 C -0.15 -1.35 9.52 37.16 0.35 -1.00 16 6 C 0.13 1.85 4.10 -4.04 -0.02 1.83 16 7 N -0.74 -13.38 5.45 -58.46 -0.32 -13.70 16 8 C 0.16 3.16 6.67 -83.51 -0.56 2.61 16 9 C -0.15 -2.65 9.31 -39.41 -0.37 -3.02 16 10 C -0.19 -3.57 10.02 -39.48 -0.40 -3.97 16 11 C 0.08 1.73 7.29 -39.43 -0.29 1.44 16 12 F -0.16 -3.18 17.26 2.25 0.04 -3.14 16 13 C -0.24 -5.48 9.14 -39.36 -0.36 -5.84 16 14 C 0.12 2.85 6.67 -38.93 -0.26 2.59 16 15 O -0.18 -4.78 9.00 0.00 0.00 -4.78 16 16 C -0.39 -10.57 9.48 30.87 0.29 -10.28 16 17 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 20 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16 25 H 0.05 0.53 6.23 -51.93 -0.32 0.20 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 28 H 0.07 1.05 7.16 -51.93 -0.37 0.68 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.61 6.12 -51.93 -0.32 0.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.50 6.88 -51.93 -0.36 0.14 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.73 6.04 -51.93 -0.31 0.41 16 36 H 0.05 0.65 7.95 -51.93 -0.41 0.23 16 37 H 0.41 8.08 7.02 -40.82 -0.29 7.80 16 38 H 0.12 1.80 6.73 -52.49 -0.35 1.44 16 39 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.14 3.16 5.62 -52.49 -0.30 2.86 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -28.50 331.08 -7.04 -35.54 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.66 Total: 9.70 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.83 Total: -20.36 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.44 Total: -37.37 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.00 Total: -4.78 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.50 -7.04 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181540590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.665 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds