Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47635 * 2 1 4 4 N 1.46507 * 109.46704 * 240.00257 * 2 1 3 5 5 C 1.36933 * 120.00060 * 85.00781 * 4 2 1 6 6 H 1.07995 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99932 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00374 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47445 * 89.99772 * 9 7 5 11 11 H 1.48495 * 109.46895 * 210.00104 * 9 7 5 12 12 H 1.48502 * 109.46845 * 329.99817 * 9 7 5 13 13 C 1.53005 * 109.47281 * 120.00487 * 2 1 3 14 14 C 1.50699 * 109.47054 * 177.04666 * 13 2 1 15 15 C 1.38230 * 120.00173 * 51.70088 * 14 13 2 16 16 C 1.38241 * 119.99790 * 179.97438 * 15 14 13 17 17 C 1.38235 * 120.00110 * 359.95697 * 16 15 14 18 18 C 1.38234 * 119.99852 * 0.27762 * 17 16 15 19 19 C 1.38235 * 119.99910 * 359.51172 * 18 17 16 20 20 C 1.50697 * 109.46494 * 297.04557 * 13 2 1 21 21 C 1.38239 * 120.00022 * 307.63392 * 20 13 2 22 22 C 1.38236 * 119.99825 * 179.77457 * 21 20 13 23 23 C 1.38238 * 119.99791 * 0.50054 * 22 21 20 24 24 C 1.38232 * 120.00275 * 359.75181 * 23 22 21 25 25 C 1.38233 * 119.99990 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47429 * 183.13130 * 1 2 3 27 27 H 1.09005 * 109.46828 * 303.13453 * 1 2 3 28 28 H 1.09007 * 109.47221 * 63.13000 * 1 2 3 29 29 H 0.97003 * 119.99756 * 264.99291 * 4 2 1 30 30 H 0.96992 * 120.00404 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46793 * 57.04378 * 13 2 1 32 32 H 1.07994 * 120.00162 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.99730 * 179.97438 * 16 15 14 34 34 H 1.07994 * 120.00214 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.99983 * 179.72284 * 18 17 16 36 36 H 1.08006 * 120.00147 * 180.25183 * 19 18 17 37 37 H 1.07993 * 120.00008 * 359.97438 * 21 20 13 38 38 H 1.07998 * 120.00260 * 180.22741 * 22 21 20 39 39 H 1.08002 * 119.99703 * 179.72794 * 23 22 21 40 40 H 1.08000 * 120.00057 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00340 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6122 -0.6616 -3.5091 8 7 2.7376 -0.0052 -4.6430 9 14 3.0576 -2.4739 -3.4250 10 1 1.8609 -3.2931 -3.7443 11 1 4.1332 -2.7653 -4.4065 12 1 3.5328 -2.8038 -2.0573 13 6 2.0400 -0.7214 1.2492 14 6 3.5452 -0.7850 1.2131 15 6 4.2809 0.3662 1.0030 16 6 5.6617 0.3078 0.9704 17 6 6.3067 -0.9017 1.1488 18 6 5.5708 -2.0538 1.3541 19 6 4.1902 -1.9947 1.3910 20 6 1.5983 0.0300 2.4785 21 6 1.8576 1.3832 2.5919 22 6 1.4483 2.0734 3.7176 23 6 0.7888 1.4083 4.7343 24 6 0.5342 0.0542 4.6232 25 6 0.9394 -0.6351 3.4956 26 1 -0.3634 -1.0260 0.0561 27 1 -0.3633 0.5618 0.8606 28 1 -0.3634 0.4645 -0.9168 29 1 2.2490 -1.6318 -1.1527 30 1 3.0615 -0.4622 -5.4347 31 1 1.6340 -1.7326 1.2760 32 1 3.7770 1.3113 0.8643 33 1 6.2364 1.2072 0.8058 34 1 7.3854 -0.9475 1.1229 35 1 6.0747 -2.9995 1.4890 36 1 3.6154 -2.8941 1.5555 37 1 2.3771 1.9016 1.7998 38 1 1.6476 3.1312 3.8046 39 1 0.4730 1.9467 5.6157 40 1 0.0193 -0.4654 5.4178 41 1 0.7408 -1.6931 3.4089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184005714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = 59.889532 kcal Electronic energy + Delta-G solvation = -21914.170230 eV Core-core repulsion = 18951.834856 eV Total energy + Delta-G solvation = -2962.335374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02997 -38.38820 -36.15730 -33.23305 -31.24077 -30.94494 -30.49559 -30.09789 -28.75911 -25.97091 -23.57272 -22.94314 -21.91832 -21.75050 -20.94217 -19.41905 -17.68742 -16.70396 -16.56539 -15.44272 -14.97571 -14.79117 -14.44959 -14.32803 -13.90546 -13.61245 -13.30551 -13.12373 -12.93963 -12.68562 -12.48343 -12.16126 -12.02343 -11.88653 -11.51052 -11.36695 -10.99751 -10.86222 -10.73576 -10.60462 -10.39722 -10.29735 -9.92136 -9.55005 -8.92407 -8.81574 -8.56154 -8.50089 -8.25519 -7.21547 -5.72459 -3.06652 1.44418 1.50554 1.78894 1.80863 3.41286 3.45730 3.48691 3.89249 4.17105 4.64223 4.79251 4.95548 5.06479 5.13818 5.16880 5.21505 5.32857 5.42665 5.44770 5.53966 5.58455 5.67198 5.72404 5.85942 5.88772 5.93111 6.08416 6.12842 6.19824 6.28231 6.37871 6.43031 6.49854 6.56860 6.60114 6.73770 6.78847 6.81564 6.88013 6.97325 7.09168 7.11089 7.38580 8.03028 8.46377 9.25385 9.98446 10.18426 11.46094 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.006571 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.408515 B = 4260.006064 C = 5155.357305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.191 3.809 3 H 0.057 0.943 4 N -0.743 5.743 5 C -0.235 4.235 6 H 0.089 0.911 7 C 0.006 3.994 8 N -0.936 5.936 9 Si 0.878 3.122 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.274 1.274 13 C -0.025 4.025 14 C -0.047 4.047 15 C -0.094 4.094 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.051 4.051 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.361 0.639 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -0.306 19.088 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.082 3.918 3 H 0.075 0.925 4 N -0.386 5.386 5 C -0.365 4.365 6 H 0.107 0.893 7 C -0.189 4.189 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.200 1.200 13 C -0.044 4.044 14 C -0.047 4.047 15 C -0.112 4.112 16 C -0.136 4.136 17 C -0.148 4.148 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.052 4.052 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.193 0.807 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.302 -0.127 18.889 18.892 hybrid contribution 0.350 -1.394 -0.240 1.457 sum 0.652 -1.521 18.650 18.723 Atomic orbital electron populations 1.22415 0.98553 1.00734 1.00799 1.20223 0.91996 0.95341 0.84247 0.92493 1.42708 1.79588 1.09437 1.06840 1.19008 1.36551 0.95502 0.85425 0.89318 1.24601 1.01492 0.97235 0.95584 1.69690 1.52963 1.35479 1.00248 0.86623 0.78047 0.87258 0.77241 1.21291 1.21923 1.19986 1.19644 0.91543 0.99837 0.93407 1.19520 0.94178 0.93337 0.97660 1.20964 0.93672 0.98180 0.98386 1.21062 0.94652 0.97707 1.00156 1.21011 0.99342 0.93010 1.01454 1.20986 0.94047 0.97983 1.01098 1.20958 0.94517 0.97066 1.01251 1.19707 0.96694 0.93905 0.94856 1.21173 0.99697 0.94070 0.98013 1.21111 0.98782 0.99699 0.94074 1.21063 1.00198 0.94747 0.98940 1.21053 1.00441 0.94604 0.97825 1.21035 0.99094 0.99727 0.93700 0.93712 0.93973 0.92155 0.80678 0.93198 0.90089 0.86214 0.86490 0.86766 0.86755 0.86777 0.85720 0.86327 0.86608 0.86505 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.23 37.15 0.34 -2.58 16 2 C 0.19 3.60 1.92 -67.93 -0.13 3.47 16 3 H 0.06 1.11 5.87 -51.93 -0.30 0.81 16 4 N -0.74 -17.27 4.43 -53.42 -0.24 -17.51 16 5 C -0.24 -6.54 10.41 -15.06 -0.16 -6.69 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.94 -29.51 13.97 55.49 0.78 -28.74 16 9 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.27 -6.68 6.52 56.52 0.37 -6.31 16 13 C -0.03 -0.40 1.89 -92.92 -0.18 -0.58 16 14 C -0.05 -0.78 4.26 -104.63 -0.45 -1.23 16 15 C -0.09 -1.58 8.36 -39.58 -0.33 -1.91 16 16 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 17 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 18 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 19 C -0.12 -1.92 9.67 -39.58 -0.38 -2.30 16 20 C -0.05 -0.72 3.71 -104.62 -0.39 -1.11 16 21 C -0.11 -1.51 8.33 -39.58 -0.33 -1.84 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 23 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.12 -1.36 10.05 -39.59 -0.40 -1.75 16 25 C -0.12 -1.48 9.67 -39.58 -0.38 -1.86 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.66 7.42 -51.93 -0.39 0.28 16 28 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.36 8.44 5.62 -40.82 -0.23 8.21 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.08 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.12 1.93 5.13 -52.49 -0.27 1.66 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.11 1.62 7.96 -52.48 -0.42 1.20 16 37 H 0.13 1.70 5.06 -52.49 -0.27 1.43 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.32 7.96 -52.49 -0.42 0.90 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -31.79 333.78 -9.67 -41.46 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.66 Total: 10.74 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -4.86 Total: -28.76 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.54 Total: -46.25 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.79 -9.67 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184005714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.345 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds