Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46599 * 2 1 4 4 N 1.46493 * 109.47399 * 120.00018 * 2 1 3 5 5 C 1.36938 * 120.00193 * 275.00643 * 4 2 1 6 6 H 1.08007 * 119.99810 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00029 * 179.97438 * 5 4 2 8 8 N 1.31611 * 119.99850 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47119 * 119.99656 * 9 7 5 12 12 H 1.48494 * 109.47249 * 239.99985 * 9 7 5 13 13 C 1.53005 * 109.47371 * 240.00267 * 2 1 3 14 14 C 1.50697 * 109.46830 * 63.42729 * 13 2 1 15 15 C 1.38232 * 120.00356 * 52.76561 * 14 13 2 16 16 C 1.38238 * 120.00376 * 179.97438 * 15 14 13 17 17 C 1.38241 * 119.99851 * 359.95727 * 16 15 14 18 18 C 1.38236 * 119.99745 * 0.27772 * 17 16 15 19 19 C 1.38238 * 119.99874 * 232.74371 * 14 13 2 20 20 C 1.50693 * 109.47081 * 183.42552 * 13 2 1 21 21 C 1.38239 * 120.00072 * 307.58881 * 20 13 2 22 22 C 1.38243 * 119.99456 * 179.76678 * 21 20 13 23 23 C 1.38232 * 120.00062 * 0.50739 * 22 21 20 24 24 C 1.38234 * 120.00144 * 359.74160 * 23 22 21 25 25 C 1.38229 * 120.00299 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46566 * 174.46056 * 1 2 3 27 27 H 1.08994 * 109.47517 * 294.45777 * 1 2 3 28 28 H 1.09001 * 109.46999 * 54.46340 * 1 2 3 29 29 H 0.97000 * 120.00139 * 94.99567 * 4 2 1 30 30 H 0.97007 * 119.99614 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47061 * 303.42764 * 13 2 1 32 32 H 1.07996 * 119.99900 * 359.97438 * 15 14 13 33 33 H 1.07996 * 120.00432 * 179.97438 * 16 15 14 34 34 H 1.07999 * 120.00200 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.00110 * 179.72705 * 18 17 16 36 36 H 1.08005 * 120.00043 * 359.97438 * 19 14 13 37 37 H 1.07991 * 120.00329 * 359.97438 * 21 20 13 38 38 H 1.08003 * 119.99296 * 180.23069 * 22 21 20 39 39 H 1.07999 * 119.99892 * 179.73009 * 23 22 21 40 40 H 1.08006 * 119.99899 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.00299 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6114 -0.6620 3.5092 8 7 2.9236 -1.9392 3.4503 9 14 2.7903 0.2700 5.1182 10 1 2.3774 1.6827 4.9205 11 1 1.9292 -0.3579 6.1523 12 1 4.2072 0.2262 5.5606 13 6 2.0401 -0.7212 -1.2493 14 6 1.6083 0.0366 -2.4782 15 6 1.8844 1.3864 -2.5905 16 6 1.4888 2.0815 -3.7180 17 6 0.8178 1.4265 -4.7337 18 6 0.5374 0.0777 -4.6193 19 6 0.9365 -0.6182 -3.4935 20 6 3.5446 -0.7951 -1.2075 21 6 4.2877 0.3530 -1.0058 22 6 5.6678 0.2843 -0.9627 23 6 6.3050 -0.9307 -1.1317 24 6 5.5620 -2.0779 -1.3385 25 6 4.1819 -2.0101 -1.3769 26 1 -0.3632 -1.0229 -0.0992 27 1 -0.3634 0.4254 0.9354 28 1 -0.3633 0.5973 -0.8363 29 1 2.2491 -1.6317 1.1526 30 1 3.2470 -2.3965 4.2423 31 1 1.6275 -1.7296 -1.2806 32 1 2.4092 1.8980 -1.7973 33 1 1.7042 3.1362 -3.8055 34 1 0.5091 1.9694 -5.6148 35 1 0.0093 -0.4331 -5.4109 36 1 0.7214 -1.6730 -3.4062 37 1 3.7901 1.3029 -0.8786 38 1 6.2482 1.1807 -0.8014 39 1 7.3833 -0.9836 -1.1024 40 1 6.0599 -3.0272 -1.4710 41 1 3.6016 -2.9063 -1.5389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184005731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = 56.359035 kcal Electronic energy + Delta-G solvation = -21826.077682 eV Core-core repulsion = 18863.589214 eV Total energy + Delta-G solvation = -2962.488468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91887 -38.27878 -35.97783 -33.16697 -31.05217 -30.86299 -30.37500 -29.96833 -28.22497 -25.86586 -23.74465 -22.91768 -21.81836 -21.67290 -20.96719 -19.20992 -17.34716 -16.56329 -16.41801 -15.32976 -14.91165 -14.78300 -14.30166 -14.19818 -13.78031 -13.56505 -13.32258 -13.00518 -12.82883 -12.63759 -12.38510 -12.03572 -11.87228 -11.67542 -11.38633 -11.14632 -10.89988 -10.81612 -10.64952 -10.53693 -10.31874 -10.14867 -9.88532 -9.61353 -8.89079 -8.75970 -8.48071 -8.36741 -8.11457 -6.88711 -5.70453 -2.97961 1.51541 1.56097 1.93016 1.94803 3.45726 3.51296 3.53377 3.95544 4.30778 4.62270 4.91917 5.04394 5.12393 5.23095 5.28044 5.33408 5.44767 5.52636 5.58126 5.61589 5.68851 5.78793 5.88336 5.99387 6.05266 6.07036 6.15958 6.20272 6.30319 6.40007 6.51113 6.55437 6.60219 6.64870 6.70850 6.82995 6.87789 6.95452 6.99667 7.08369 7.16771 7.22260 7.52559 7.74958 8.47418 9.59201 10.16911 10.52087 11.52238 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.006095 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.962831 B = 4592.946019 C = 5566.424090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.187 3.813 3 H 0.048 0.952 4 N -0.718 5.718 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.901 3.099 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.023 4.023 14 C -0.049 4.049 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.041 4.041 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.384 0.616 30 H 0.253 0.747 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 3.782 -16.147 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.077 3.923 3 H 0.066 0.934 4 N -0.359 5.359 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.733 3.267 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.042 4.042 14 C -0.050 4.050 15 C -0.131 4.131 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.136 4.136 20 C -0.041 4.041 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.217 0.783 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.089 3.909 -15.991 16.462 hybrid contribution 0.179 0.087 1.109 1.127 sum 0.090 3.996 -14.882 15.409 Atomic orbital electron populations 1.22451 0.99138 1.00536 1.00373 1.20240 0.91762 0.95050 0.85260 0.93379 1.42335 1.77958 1.10643 1.04955 1.19211 1.36140 0.93733 0.87194 0.91374 1.24677 1.02355 0.95917 0.97836 1.69670 1.51090 1.08590 1.28536 0.86201 0.77255 0.78832 0.84437 1.20658 1.22009 1.22010 1.19624 0.91656 0.99771 0.93148 1.19773 0.96367 0.93901 0.94957 1.21169 0.99809 0.94129 0.97951 1.21098 0.98940 0.99626 0.94122 1.21047 1.00252 0.94865 0.98945 1.21057 1.00431 0.94597 0.97855 1.21058 0.99010 0.99794 0.93718 1.19467 0.94055 0.93254 0.97308 1.20911 0.93589 0.98093 0.98898 1.21000 0.94669 0.97526 1.00616 1.20965 0.99182 0.93059 1.01660 1.20961 0.94057 0.97886 1.00884 1.20934 0.94472 0.96973 1.00737 0.93688 0.92584 0.94361 0.78258 0.93735 0.90036 0.85816 0.86445 0.86680 0.86536 0.86294 0.86578 0.86830 0.86981 0.86819 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.19 3.67 1.94 -67.93 -0.13 3.54 16 3 H 0.05 0.97 5.92 -51.93 -0.31 0.66 16 4 N -0.72 -17.65 4.62 -53.42 -0.25 -17.89 16 5 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 9 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 C -0.02 -0.38 1.89 -92.93 -0.18 -0.56 16 14 C -0.05 -0.73 3.78 -104.63 -0.40 -1.12 16 15 C -0.11 -1.59 8.31 -39.58 -0.33 -1.91 16 16 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 17 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 18 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 19 C -0.12 -1.56 9.67 -39.58 -0.38 -1.94 16 20 C -0.04 -0.72 4.24 -104.62 -0.44 -1.16 16 21 C -0.10 -1.70 8.35 -39.58 -0.33 -2.03 16 22 C -0.12 -1.97 10.05 -39.58 -0.40 -2.36 16 23 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 24 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 25 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.63 7.52 -51.93 -0.39 0.24 16 29 H 0.38 10.18 7.75 -40.82 -0.32 9.87 16 30 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.08 1.37 7.65 -51.93 -0.40 0.97 16 32 H 0.12 1.74 5.01 -52.49 -0.26 1.48 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.42 7.96 -52.48 -0.42 1.00 16 37 H 0.12 1.93 5.10 -52.49 -0.27 1.67 16 38 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.11 1.77 7.96 -52.49 -0.42 1.35 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -30.76 336.93 -10.04 -40.79 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.71 Total: 11.79 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -4.86 Total: -29.90 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.48 Total: -45.34 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.76 -10.04 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184005731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.153 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds