Wall clock time and date at job start Tue Mar 31 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 N 1.46896 * 109.47115 * 181.26623 * 3 2 1 5 5 C 1.46908 * 110.99790 * 296.97552 * 4 3 2 6 6 C 1.53004 * 109.47178 * 288.25198 * 5 4 3 7 7 C 1.52999 * 109.47099 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.46948 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00698 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99779 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00118 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99980 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46894 * 60.00350 * 12 10 8 14 14 H 1.48496 * 109.47148 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46984 * 300.00488 * 12 10 8 16 16 C 1.46896 * 111.00543 * 60.92881 * 4 3 2 17 17 C 1.52998 * 109.46804 * 66.04723 * 16 4 3 18 18 C 1.50700 * 109.47140 * 179.97438 * 17 16 4 19 19 C 1.33389 * 125.20076 * 90.00207 * 18 17 16 20 20 C 1.38429 * 114.91941 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.91984 * 359.97438 * 20 19 18 22 22 S 1.75880 * 125.20414 * 269.69397 * 18 17 16 23 23 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47154 * 300.00185 * 1 2 3 25 25 H 1.09001 * 109.47016 * 60.00622 * 1 2 3 26 26 H 1.09004 * 109.47036 * 239.99733 * 2 1 3 27 27 H 1.08998 * 109.47134 * 119.99893 * 2 1 3 28 28 H 1.08995 * 109.47042 * 61.25662 * 3 2 1 29 29 H 1.09003 * 109.46549 * 301.25853 * 3 2 1 30 30 H 1.09001 * 109.46935 * 48.25007 * 5 4 3 31 31 H 1.08995 * 109.47096 * 168.24816 * 5 4 3 32 32 H 1.08996 * 109.47065 * 299.96019 * 6 5 4 33 33 H 1.09000 * 109.46707 * 59.95608 * 6 5 4 34 34 H 1.09008 * 109.46983 * 300.00225 * 7 6 5 35 35 H 1.09003 * 109.47217 * 59.99851 * 7 6 5 36 36 H 0.97001 * 119.99945 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47376 * 306.04933 * 16 4 3 38 38 H 1.09001 * 109.47273 * 186.04631 * 16 4 3 39 39 H 1.09001 * 109.46982 * 59.99969 * 17 16 4 40 40 H 1.09001 * 109.47131 * 299.99996 * 17 16 4 41 41 H 1.07995 * 122.54316 * 359.95693 * 19 18 17 42 42 H 1.08003 * 122.53962 * 180.02562 * 20 19 18 43 43 H 1.08009 * 125.20305 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 -0.0306 5 6 4.0604 0.8114 1.1758 6 6 3.8463 1.7341 2.3775 7 6 4.4203 1.0765 3.6340 8 6 4.2089 1.9850 4.8176 9 1 3.7142 2.9361 4.6868 10 6 4.6461 1.6015 6.0678 11 7 5.2481 0.4432 6.2272 12 14 4.3847 2.7280 7.5348 13 1 2.9312 2.9686 7.7213 14 1 4.9417 2.0897 8.7545 15 1 5.0738 4.0214 7.2948 16 6 4.0101 0.7851 -1.2448 17 6 3.6205 1.6131 -2.4709 18 6 4.1354 0.9390 -3.7165 19 6 3.4665 0.0352 -4.4342 20 6 4.1428 -0.4468 -5.5417 21 6 5.3606 0.0661 -5.7237 22 16 5.7071 1.2293 -4.4507 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6953 1.9497 0.9010 29 1 1.6584 1.9627 -0.8785 30 1 3.5553 -0.1382 1.3524 31 1 5.1272 0.6355 1.0383 32 1 4.3519 2.6835 2.2012 33 1 2.7795 1.9106 2.5144 34 1 3.9149 0.1270 3.8104 35 1 5.4872 0.9002 3.4968 36 1 5.5560 0.1736 7.1067 37 1 3.5741 -0.2107 -1.3253 38 1 5.0957 0.7031 -1.1917 39 1 4.0565 2.6088 -2.3904 40 1 2.5349 1.6950 -2.5240 41 1 2.4728 -0.2957 -4.1710 42 1 3.7164 -1.1817 -6.2084 43 1 6.0300 -0.1907 -6.5315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184508091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:04 Heat of formation + Delta-G solvation = 10.549440 kcal Electronic energy + Delta-G solvation = -19455.892349 eV Core-core repulsion = 16626.861380 eV Total energy + Delta-G solvation = -2829.030970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.83529 -37.78299 -34.04199 -33.36458 -32.33706 -30.72192 -27.92901 -26.69295 -25.44050 -23.79500 -22.65738 -22.32565 -20.33616 -19.38935 -19.21615 -17.27957 -16.31132 -15.88475 -15.72819 -15.40079 -14.57041 -14.23370 -14.15306 -13.74108 -13.39895 -13.21343 -12.94029 -12.68470 -12.34571 -12.22687 -12.16552 -11.75919 -11.48490 -11.39708 -11.36528 -11.18219 -11.07876 -10.84330 -10.76038 -10.52022 -10.45498 -10.29042 -9.51745 -9.29873 -9.05226 -8.77217 -8.64267 -8.30422 -7.95842 -5.96063 -3.97906 0.82943 1.47489 1.85293 2.56741 3.35999 3.40003 3.42836 4.10359 4.49933 4.76222 4.85510 4.93616 5.03357 5.12375 5.17149 5.28894 5.37583 5.39636 5.40356 5.48967 5.60872 5.69476 5.77885 5.85788 5.93305 5.94555 5.96604 6.06881 6.11091 6.13292 6.27129 6.34004 6.40907 6.43436 6.75318 6.83491 7.18307 7.39099 7.43288 7.72871 7.88548 8.04847 8.48452 9.09264 9.65800 11.15391 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003024 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.192166 B = 9257.205700 C =10012.222972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.051 3.949 4 N -0.536 5.536 5 C 0.052 3.948 6 C -0.102 4.102 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.056 3.944 17 C -0.048 4.048 18 C -0.161 4.161 19 C -0.147 4.147 20 C -0.132 4.132 21 C -0.223 4.223 22 S 0.099 5.901 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.012 0.988 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -1.444 -23.672 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C -0.078 4.078 4 N -0.259 5.259 5 C -0.075 4.075 6 C -0.140 4.140 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.072 4.072 17 C -0.087 4.087 18 C -0.279 4.279 19 C -0.177 4.177 20 C -0.163 4.163 21 C -0.359 4.359 22 S 0.362 5.638 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.984 -0.135 -23.215 23.407 hybrid contribution -1.505 -1.356 0.457 2.077 sum -4.490 -1.491 -22.758 23.245 Atomic orbital electron populations 1.21658 0.95627 1.01353 1.01691 1.22202 0.96502 0.99598 1.02303 1.22293 0.87606 0.95167 1.02689 1.62287 1.07104 1.54522 1.01956 1.22360 0.99019 0.96601 0.89526 1.21609 1.00316 0.98302 0.93756 1.19063 0.96019 0.95754 0.90680 1.21223 1.37674 1.03901 0.92828 0.92748 1.25027 0.95320 0.95183 0.98965 1.69956 1.39847 1.20615 1.23253 0.86670 0.78453 0.80946 0.82008 1.20280 1.21340 1.20226 1.22131 1.00393 0.95530 0.89189 1.20189 1.01193 0.98861 0.88474 1.24578 0.97656 1.03489 1.02144 1.20128 1.01910 0.99389 0.96316 1.20157 0.94644 1.02377 0.99120 1.25603 1.01453 1.04386 1.04426 1.84420 1.16908 1.41672 1.20761 0.93106 0.92450 0.93079 0.92162 0.91190 0.90044 0.91259 0.94611 0.91539 0.92726 0.93520 0.96923 0.96709 0.93017 0.94238 0.90892 0.89879 0.89937 0.84505 0.84550 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.17 -2.05 5.30 -26.73 -0.14 -2.19 16 3 C 0.05 0.66 4.98 -3.83 -0.02 0.64 16 4 N -0.54 -7.84 4.67 -234.63 -1.10 -8.94 16 5 C 0.05 0.90 4.84 -3.82 -0.02 0.89 16 6 C -0.10 -2.14 5.20 -26.73 -0.14 -2.28 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.06 0.70 4.71 -3.83 -0.02 0.69 16 17 C -0.05 -0.51 5.63 -27.88 -0.16 -0.67 16 18 C -0.16 -1.68 5.76 -36.00 -0.21 -1.89 16 19 C -0.15 -1.43 10.05 -41.21 -0.41 -1.85 16 20 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 21 C -0.22 -1.96 11.23 29.04 0.33 -1.64 16 22 S 0.10 0.99 23.33 -107.50 -2.51 -1.52 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 27 H 0.07 1.00 6.30 -51.93 -0.33 0.67 16 28 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 29 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 30 H 0.04 0.63 5.91 -51.93 -0.31 0.32 16 31 H 0.07 1.18 7.81 -51.93 -0.41 0.77 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.97 6.70 -51.93 -0.35 0.62 16 34 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.04 0.49 6.00 -51.93 -0.31 0.18 16 38 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.82 6.53 -51.93 -0.34 0.48 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 43 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.21 353.06 -11.17 -41.38 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.22 Total: -2.26 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -1.39 Total: -24.31 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.36 Total: -35.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.21 -11.17 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184508091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.929 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds