Wall clock time and date at job start Tue Mar 31 2020 05:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 N 1.46896 * 109.47115 * 181.26623 * 3 2 1 5 5 C 1.46908 * 110.99790 * 296.97552 * 4 3 2 6 6 C 1.53004 * 109.47178 * 288.25198 * 5 4 3 7 7 C 1.52999 * 109.47099 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.46948 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00698 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99779 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00118 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99980 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46894 * 60.00350 * 12 10 8 14 14 H 1.48496 * 109.47148 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46984 * 300.00488 * 12 10 8 16 16 C 1.46896 * 111.00543 * 60.92881 * 4 3 2 17 17 C 1.52998 * 109.46804 * 66.04723 * 16 4 3 18 18 C 1.50700 * 109.47140 * 179.97438 * 17 16 4 19 19 C 1.33389 * 125.20076 * 90.00207 * 18 17 16 20 20 C 1.38429 * 114.91941 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.91984 * 359.97438 * 20 19 18 22 22 S 1.75880 * 125.20414 * 269.69397 * 18 17 16 23 23 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47154 * 300.00185 * 1 2 3 25 25 H 1.09001 * 109.47016 * 60.00622 * 1 2 3 26 26 H 1.09004 * 109.47036 * 239.99733 * 2 1 3 27 27 H 1.08998 * 109.47134 * 119.99893 * 2 1 3 28 28 H 1.08995 * 109.47042 * 61.25662 * 3 2 1 29 29 H 1.09003 * 109.46549 * 301.25853 * 3 2 1 30 30 H 1.09001 * 109.46935 * 48.25007 * 5 4 3 31 31 H 1.08995 * 109.47096 * 168.24816 * 5 4 3 32 32 H 1.08996 * 109.47065 * 299.96019 * 6 5 4 33 33 H 1.09000 * 109.46707 * 59.95608 * 6 5 4 34 34 H 1.09008 * 109.46983 * 300.00225 * 7 6 5 35 35 H 1.09003 * 109.47217 * 59.99851 * 7 6 5 36 36 H 0.97001 * 119.99945 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47376 * 306.04933 * 16 4 3 38 38 H 1.09001 * 109.47273 * 186.04631 * 16 4 3 39 39 H 1.09001 * 109.46982 * 59.99969 * 17 16 4 40 40 H 1.09001 * 109.47131 * 299.99996 * 17 16 4 41 41 H 1.07995 * 122.54316 * 359.95693 * 19 18 17 42 42 H 1.08003 * 122.53962 * 180.02562 * 20 19 18 43 43 H 1.08009 * 125.20305 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 -0.0306 5 6 4.0604 0.8114 1.1758 6 6 3.8463 1.7341 2.3775 7 6 4.4203 1.0765 3.6340 8 6 4.2089 1.9850 4.8176 9 1 3.7142 2.9361 4.6868 10 6 4.6461 1.6015 6.0678 11 7 5.2481 0.4432 6.2272 12 14 4.3847 2.7280 7.5348 13 1 2.9312 2.9686 7.7213 14 1 4.9417 2.0897 8.7545 15 1 5.0738 4.0214 7.2948 16 6 4.0101 0.7851 -1.2448 17 6 3.6205 1.6131 -2.4709 18 6 4.1354 0.9390 -3.7165 19 6 3.4665 0.0352 -4.4342 20 6 4.1428 -0.4468 -5.5417 21 6 5.3606 0.0661 -5.7237 22 16 5.7071 1.2293 -4.4507 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6953 1.9497 0.9010 29 1 1.6584 1.9627 -0.8785 30 1 3.5553 -0.1382 1.3524 31 1 5.1272 0.6355 1.0383 32 1 4.3519 2.6835 2.2012 33 1 2.7795 1.9106 2.5144 34 1 3.9149 0.1270 3.8104 35 1 5.4872 0.9002 3.4968 36 1 5.5560 0.1736 7.1067 37 1 3.5741 -0.2107 -1.3253 38 1 5.0957 0.7031 -1.1917 39 1 4.0565 2.6088 -2.3904 40 1 2.5349 1.6950 -2.5240 41 1 2.4728 -0.2957 -4.1710 42 1 3.7164 -1.1817 -6.2084 43 1 6.0300 -0.1907 -6.5315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184508091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:03 Heat of formation + Delta-G solvation = -5.186630 kcal Electronic energy + Delta-G solvation = -19456.574717 eV Core-core repulsion = 16626.861380 eV Total energy + Delta-G solvation = -2829.713337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91497 -38.59768 -35.92430 -34.28558 -33.98943 -32.16231 -29.09272 -28.07791 -26.67703 -25.03852 -23.86283 -23.44097 -21.91814 -20.51164 -20.08629 -18.48586 -18.02093 -17.00767 -16.90920 -16.48753 -16.19459 -15.55047 -15.29283 -14.96311 -14.37156 -14.35490 -14.22126 -13.84262 -13.59414 -13.27990 -13.23511 -12.97552 -12.94380 -12.69555 -12.56995 -12.50620 -12.34555 -12.24579 -12.12710 -11.98148 -11.67081 -11.50378 -11.34620 -11.17082 -11.02898 -10.53934 -9.53673 -9.38916 -9.14185 -8.19654 -6.30739 0.10983 0.75247 1.14832 1.39663 1.43119 1.50999 1.87176 2.41149 2.96975 3.13229 3.88128 3.93115 4.06156 4.14515 4.22651 4.28560 4.30244 4.36889 4.45636 4.54019 4.59534 4.70396 4.73404 4.77306 4.85554 4.95400 4.98233 5.01526 5.06629 5.09927 5.22192 5.25747 5.29054 5.30270 5.41788 5.44922 5.53950 5.64352 5.75671 5.86840 6.10608 6.22835 6.28795 6.85980 7.38358 8.92140 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003024 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.192166 B = 9257.205700 C =10012.222972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.162 4.162 3 C 0.051 3.949 4 N -0.541 5.541 5 C 0.064 3.936 6 C -0.085 4.085 7 C 0.027 3.973 8 C -0.543 4.543 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.061 3.939 17 C -0.037 4.037 18 C -0.178 4.178 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.219 4.219 22 S 0.071 5.929 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.049 0.951 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -0.978 -25.012 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C -0.077 4.077 4 N -0.264 5.264 5 C -0.064 4.064 6 C -0.123 4.123 7 C -0.010 4.010 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.067 4.067 17 C -0.076 4.076 18 C -0.296 4.296 19 C -0.176 4.176 20 C -0.171 4.171 21 C -0.354 4.354 22 S 0.334 5.666 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.196 0.339 -24.577 24.934 hybrid contribution -1.118 -1.553 0.803 2.075 sum -5.314 -1.214 -23.773 24.390 Atomic orbital electron populations 1.21638 0.94126 1.01995 1.02247 1.22131 0.97791 0.98661 1.01482 1.22342 0.86469 0.95874 1.03002 1.62204 1.08240 1.54466 1.01473 1.22051 0.98902 0.95671 0.89745 1.21338 0.99810 0.98156 0.93029 1.18952 0.94383 0.94860 0.92821 1.21666 1.37931 1.04467 0.94052 0.92306 1.25994 0.94754 0.96793 1.02314 1.70093 1.40656 1.22494 1.24205 0.85507 0.78930 0.78848 0.77819 1.19086 1.20745 1.19180 1.22114 0.99738 0.95985 0.88892 1.20041 1.01801 0.98081 0.87689 1.24548 0.97957 1.04574 1.02524 1.20409 1.02433 0.98599 0.96173 1.20454 0.94626 1.02779 0.99247 1.25920 1.01859 1.03377 1.04235 1.84517 1.17392 1.42779 1.21921 0.92464 0.93223 0.91184 0.91145 0.93790 0.91687 0.88838 0.94895 0.92150 0.93228 0.93236 0.99280 0.99233 0.92766 0.93859 0.91941 0.90518 0.88756 0.83156 0.82277 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.16 -3.78 5.30 30.59 0.16 -3.62 16 3 C 0.05 1.27 4.98 86.30 0.43 1.70 16 4 N -0.54 -15.59 4.67 -896.23 -4.18 -19.77 16 5 C 0.06 2.28 4.84 86.30 0.42 2.70 16 6 C -0.09 -3.67 5.20 30.60 0.16 -3.51 16 7 C 0.03 1.50 4.97 29.85 0.15 1.64 16 8 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 11 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 12 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.06 1.48 4.71 86.30 0.41 1.88 16 17 C -0.04 -0.73 5.63 29.85 0.17 -0.57 16 18 C -0.18 -3.47 5.76 24.59 0.14 -3.33 16 19 C -0.15 -2.50 10.05 21.22 0.21 -2.29 16 20 C -0.14 -2.14 10.18 21.22 0.22 -1.93 16 21 C -0.22 -3.41 11.23 66.72 0.75 -2.66 16 22 S 0.07 1.35 23.33 -56.49 -1.32 0.03 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.50 6.23 -2.38 -0.01 1.49 16 27 H 0.04 1.26 6.30 -2.39 -0.02 1.24 16 28 H 0.06 1.85 6.58 -2.39 -0.02 1.83 16 29 H 0.09 1.90 6.43 -2.39 -0.02 1.89 16 30 H 0.03 1.19 5.91 -2.39 -0.01 1.18 16 31 H 0.06 2.21 7.81 -2.39 -0.02 2.19 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.08 6.70 -2.39 -0.02 2.07 16 34 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.04 1.03 6.00 -2.39 -0.01 1.01 16 38 H 0.06 1.64 7.86 -2.39 -0.02 1.63 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.64 6.53 -2.39 -0.02 1.63 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -65.37 353.06 2.39 -62.98 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.96 Total: 10.60 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 4.62 Total: -43.20 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.90 Total: -77.48 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -65.37 2.39 -62.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184508091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.792 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds