Wall clock time and date at job start Tue Mar 31 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47930 * 2 1 4 4 C 1.53007 * 109.46757 * 239.99929 * 2 1 3 5 5 C 1.53002 * 109.47209 * 120.00722 * 2 1 3 6 6 C 1.53000 * 109.47410 * 59.99410 * 5 2 1 7 7 N 1.46500 * 109.46917 * 180.02562 * 6 5 2 8 8 C 1.39934 * 119.99578 * 179.97438 * 7 6 5 9 9 C 1.38716 * 120.07959 * 359.72634 * 8 7 6 10 10 C 1.38211 * 120.01466 * 179.69530 * 9 8 7 11 11 C 1.38536 * 120.17636 * 0.60088 * 10 9 8 12 12 F 1.35095 * 119.92067 * 179.69928 * 11 10 9 13 13 C 1.38360 * 120.15690 * 359.67675 * 11 10 9 14 14 C 1.38725 * 119.97966 * 0.02562 * 13 11 10 15 15 O 1.35794 * 120.08632 * 180.02562 * 14 13 11 16 16 C 1.34813 * 116.99816 * 354.40128 * 15 14 13 17 17 H 1.08001 * 119.99904 * 5.06319 * 16 15 14 18 18 C 1.38631 * 119.99870 * 185.06382 * 16 15 14 19 19 N 1.31575 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47266 * 60.00069 * 20 18 16 22 22 H 1.48499 * 109.47269 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47236 * 300.00000 * 20 18 16 24 24 H 1.09004 * 109.46955 * 300.00410 * 1 2 3 25 25 H 1.09007 * 109.47345 * 59.99466 * 1 2 3 26 26 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47527 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46545 * 300.00718 * 3 2 1 29 29 H 1.09001 * 109.46642 * 59.99696 * 3 2 1 30 30 H 1.08997 * 109.47440 * 300.00357 * 4 2 1 31 31 H 1.08999 * 109.46845 * 60.00481 * 4 2 1 32 32 H 1.09008 * 109.46867 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46940 * 299.99491 * 5 2 1 34 34 H 1.08995 * 109.47285 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.46772 * 300.00415 * 6 5 2 36 36 H 1.08992 * 109.47182 * 60.00110 * 6 5 2 37 37 H 0.96999 * 120.00525 * 0.02562 * 7 6 5 38 38 H 1.07996 * 119.99200 * 359.97438 * 9 8 7 39 39 H 1.07999 * 119.91290 * 180.27801 * 10 9 8 40 40 H 1.08001 * 120.00558 * 180.02562 * 13 11 10 41 41 H 0.96998 * 119.99792 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.5299 -2.1639 1.2491 7 7 2.0178 -2.8544 2.4455 8 6 1.6791 -4.1939 2.6672 9 6 0.8769 -4.8678 1.7581 10 6 0.5484 -6.1926 1.9752 11 6 1.0081 -6.8478 3.1060 12 9 0.6788 -8.1411 3.3161 13 6 1.8040 -6.1809 4.0204 14 6 2.1427 -4.8529 3.8059 15 8 2.9242 -4.1964 4.7017 16 6 3.2418 -4.8545 5.8345 17 1 2.9467 -5.8857 5.9609 18 6 3.9473 -4.2076 6.8373 19 7 4.3073 -2.9515 6.6832 20 14 4.3881 -5.1197 8.4068 21 1 5.2324 -6.2955 8.0755 22 1 5.1374 -4.2125 9.3127 23 1 3.1456 -5.5763 9.0796 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2494 31 1 1.6765 -0.2074 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 1.6767 -0.2076 2.1392 34 1 3.1299 -0.7210 1.2494 35 1 0.4398 -2.1638 1.2491 36 1 1.8931 -2.6777 0.3592 37 1 2.5749 -2.3829 3.0844 38 1 0.5126 -4.3584 0.8782 39 1 -0.0726 -6.7170 1.2640 40 1 2.1613 -6.6942 4.9009 41 1 4.8006 -2.4987 7.3850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187302825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:46 Heat of formation + Delta-G solvation = -67.758369 kcal Electronic energy + Delta-G solvation = -21909.046451 eV Core-core repulsion = 18510.406624 eV Total energy + Delta-G solvation = -3398.639827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.03136 -39.24950 -38.18844 -36.44187 -34.40227 -32.29125 -29.84876 -29.23025 -27.42136 -27.37581 -26.66305 -25.37304 -23.32550 -21.48310 -20.89518 -18.75812 -18.16123 -17.46532 -16.14292 -15.86528 -15.14982 -15.13065 -14.78690 -14.69538 -14.31967 -14.16369 -14.11691 -13.53615 -13.49393 -13.33043 -13.05206 -12.45903 -12.21404 -12.11155 -11.89471 -11.76954 -11.69721 -11.60470 -11.42572 -11.14827 -10.84147 -10.66814 -10.60624 -10.53173 -10.48151 -10.35084 -9.57185 -9.16813 -8.84197 -7.72387 -6.47943 -6.40801 -4.02692 2.14441 2.25950 3.13850 3.14619 3.17007 3.93196 4.03157 4.49023 4.70832 4.73859 4.79608 4.99034 5.09634 5.28758 5.31095 5.34907 5.44353 5.56766 5.57694 5.60135 5.69382 5.71099 5.80932 5.84785 5.85923 5.99106 6.04398 6.05196 6.13880 6.19550 6.35734 6.38137 6.48081 6.61206 6.83500 7.04484 7.12057 7.26287 7.64505 7.93809 8.07585 8.45498 8.98948 9.65333 10.70254 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004892 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.933937 B = 5721.849841 C = 7604.139297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.121 4.121 6 C 0.130 3.870 7 N -0.746 5.746 8 C 0.155 3.845 9 C -0.147 4.147 10 C -0.195 4.195 11 C 0.084 3.916 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.120 3.880 15 O -0.176 6.176 16 C -0.387 4.387 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 5.007 -11.800 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.159 4.159 6 C 0.005 3.995 7 N -0.380 5.380 8 C 0.053 3.947 9 C -0.171 4.171 10 C -0.215 4.215 11 C 0.063 3.937 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.065 3.935 15 O -0.081 6.081 16 C -0.463 4.463 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.003 5.438 -11.809 13.931 hybrid contribution 0.351 -0.613 1.110 1.316 sum -4.653 4.825 -10.699 12.625 Atomic orbital electron populations 1.21959 0.94599 1.02145 1.01562 1.20468 0.95690 0.95361 0.95045 1.21866 1.01065 0.95308 1.01589 1.21961 1.01140 1.00515 0.96642 1.21809 1.01376 0.94920 0.97809 1.21309 0.98117 0.91716 0.88328 1.44385 1.58842 1.09023 1.25792 1.17114 0.98602 0.85196 0.93783 1.19914 1.03201 0.94209 0.99816 1.20291 1.07207 0.95449 0.98546 1.17226 1.01258 0.78382 0.96800 1.91373 1.91546 1.35548 1.95234 1.20787 1.07032 0.95438 1.02976 1.18608 0.93570 0.90451 0.90867 1.83891 1.57078 1.40495 1.26596 1.21246 1.36376 0.96729 0.91939 0.89178 1.25232 0.96486 0.95930 0.98721 1.70011 1.36087 1.09854 1.34013 0.85790 0.78992 0.78785 0.79972 1.19499 1.20314 1.19492 0.92585 0.92906 0.92133 0.92612 0.92799 0.92611 0.92138 0.92906 0.92589 0.91217 0.91232 0.92907 0.92890 0.75630 0.86257 0.86592 0.84490 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.12 37.15 0.30 -1.05 16 2 C -0.07 -0.64 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.27 8.47 37.16 0.31 -0.96 16 4 C -0.15 -1.35 8.12 37.16 0.30 -1.04 16 5 C -0.12 -1.46 4.38 -26.73 -0.12 -1.58 16 6 C 0.13 1.80 4.21 -4.04 -0.02 1.78 16 7 N -0.75 -13.68 5.73 -58.46 -0.34 -14.02 16 8 C 0.15 3.18 6.67 -83.52 -0.56 2.62 16 9 C -0.15 -2.66 9.31 -39.41 -0.37 -3.03 16 10 C -0.19 -3.58 10.02 -39.48 -0.40 -3.98 16 11 C 0.08 1.74 7.29 -39.43 -0.29 1.45 16 12 F -0.16 -3.17 17.26 2.25 0.04 -3.13 16 13 C -0.24 -5.49 9.14 -39.36 -0.36 -5.85 16 14 C 0.12 2.87 6.67 -38.94 -0.26 2.61 16 15 O -0.18 -4.81 9.00 -0.04 0.00 -4.81 16 16 C -0.39 -10.63 9.49 30.88 0.29 -10.34 16 17 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 20 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.71 6.23 -51.93 -0.32 0.38 16 36 H 0.05 0.71 6.25 -51.93 -0.32 0.38 16 37 H 0.41 8.17 7.84 -40.82 -0.32 7.85 16 38 H 0.12 1.80 6.73 -52.49 -0.35 1.45 16 39 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -28.79 335.13 -6.80 -35.59 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.92 Total: 8.78 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.37 Total: -19.12 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.42 Total: -37.79 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.79 -6.80 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187302825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.167 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds