Wall clock time and date at job start Tue Mar 31 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47930 * 2 1 4 4 C 1.53007 * 109.46757 * 239.99929 * 2 1 3 5 5 C 1.53002 * 109.47209 * 120.00722 * 2 1 3 6 6 C 1.53000 * 109.47410 * 59.99410 * 5 2 1 7 7 N 1.46500 * 109.46917 * 180.02562 * 6 5 2 8 8 C 1.39934 * 119.99578 * 179.97438 * 7 6 5 9 9 C 1.38716 * 120.07959 * 359.72634 * 8 7 6 10 10 C 1.38211 * 120.01466 * 179.69530 * 9 8 7 11 11 C 1.38536 * 120.17636 * 0.60088 * 10 9 8 12 12 F 1.35095 * 119.92067 * 179.69928 * 11 10 9 13 13 C 1.38360 * 120.15690 * 359.67675 * 11 10 9 14 14 C 1.38725 * 119.97966 * 0.02562 * 13 11 10 15 15 O 1.35794 * 120.08632 * 180.02562 * 14 13 11 16 16 C 1.34813 * 116.99816 * 354.40128 * 15 14 13 17 17 H 1.08001 * 119.99904 * 5.06319 * 16 15 14 18 18 C 1.38631 * 119.99870 * 185.06382 * 16 15 14 19 19 N 1.31575 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47266 * 60.00069 * 20 18 16 22 22 H 1.48499 * 109.47269 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47236 * 300.00000 * 20 18 16 24 24 H 1.09004 * 109.46955 * 300.00410 * 1 2 3 25 25 H 1.09007 * 109.47345 * 59.99466 * 1 2 3 26 26 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47527 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46545 * 300.00718 * 3 2 1 29 29 H 1.09001 * 109.46642 * 59.99696 * 3 2 1 30 30 H 1.08997 * 109.47440 * 300.00357 * 4 2 1 31 31 H 1.08999 * 109.46845 * 60.00481 * 4 2 1 32 32 H 1.09008 * 109.46867 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46940 * 299.99491 * 5 2 1 34 34 H 1.08995 * 109.47285 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.46772 * 300.00415 * 6 5 2 36 36 H 1.08992 * 109.47182 * 60.00110 * 6 5 2 37 37 H 0.96999 * 120.00525 * 0.02562 * 7 6 5 38 38 H 1.07996 * 119.99200 * 359.97438 * 9 8 7 39 39 H 1.07999 * 119.91290 * 180.27801 * 10 9 8 40 40 H 1.08001 * 120.00558 * 180.02562 * 13 11 10 41 41 H 0.96998 * 119.99792 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.5299 -2.1639 1.2491 7 7 2.0178 -2.8544 2.4455 8 6 1.6791 -4.1939 2.6672 9 6 0.8769 -4.8678 1.7581 10 6 0.5484 -6.1926 1.9752 11 6 1.0081 -6.8478 3.1060 12 9 0.6788 -8.1411 3.3161 13 6 1.8040 -6.1809 4.0204 14 6 2.1427 -4.8529 3.8059 15 8 2.9242 -4.1964 4.7017 16 6 3.2418 -4.8545 5.8345 17 1 2.9467 -5.8857 5.9609 18 6 3.9473 -4.2076 6.8373 19 7 4.3073 -2.9515 6.6832 20 14 4.3881 -5.1197 8.4068 21 1 5.2324 -6.2955 8.0755 22 1 5.1374 -4.2125 9.3127 23 1 3.1456 -5.5763 9.0796 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2494 31 1 1.6765 -0.2074 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 1.6767 -0.2076 2.1392 34 1 3.1299 -0.7210 1.2494 35 1 0.4398 -2.1638 1.2491 36 1 1.8931 -2.6777 0.3592 37 1 2.5749 -2.3829 3.0844 38 1 0.5126 -4.3584 0.8782 39 1 -0.0726 -6.7170 1.2640 40 1 2.1613 -6.6942 4.9009 41 1 4.8006 -2.4987 7.3850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187302825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:46 Heat of formation + Delta-G solvation = -83.634650 kcal Electronic energy + Delta-G solvation = -21909.734898 eV Core-core repulsion = 18510.406624 eV Total energy + Delta-G solvation = -3399.328274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.63673 -40.90460 -39.22621 -38.08142 -35.78774 -34.26445 -31.15427 -30.89272 -28.28383 -28.09515 -27.99887 -27.27052 -24.64017 -23.07834 -22.42548 -20.00150 -19.72819 -19.09997 -17.62488 -17.38073 -16.93478 -16.49871 -16.11320 -16.02456 -15.81975 -15.42335 -15.36470 -15.02363 -14.87631 -14.78118 -14.37757 -13.76698 -13.56889 -13.29716 -13.28366 -13.10334 -12.81212 -12.60148 -12.54997 -12.52078 -12.21698 -12.11219 -12.03874 -11.59168 -11.47794 -11.42108 -11.31778 -10.79264 -10.61796 -9.43229 -8.46673 -8.01041 -6.09118 0.49122 0.62143 1.35152 1.44162 1.49456 2.16577 2.62706 2.77871 3.11020 3.34415 3.64859 3.82839 3.91773 3.94834 4.02713 4.25868 4.35163 4.36922 4.54471 4.61094 4.65052 4.77008 4.84490 4.85601 4.96431 5.02180 5.06340 5.09746 5.11650 5.13510 5.18871 5.25677 5.33590 5.40820 5.44329 5.47248 5.54668 5.57101 5.97013 6.05551 6.58023 6.84165 6.98987 7.75784 8.75101 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004892 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.933937 B = 5721.849841 C = 7604.139297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.117 4.117 6 C 0.128 3.872 7 N -0.749 5.749 8 C 0.152 3.848 9 C -0.137 4.137 10 C -0.163 4.163 11 C 0.063 3.937 12 F -0.155 7.155 13 C -0.247 4.247 14 C 0.078 3.922 15 O -0.216 6.216 16 C -0.410 4.410 17 H 0.093 0.907 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.010 2.990 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.262 1.262 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.395 0.605 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.122 0.878 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 4.596 -13.965 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.155 4.155 6 C 0.005 3.995 7 N -0.381 5.381 8 C 0.049 3.951 9 C -0.161 4.161 10 C -0.183 4.183 11 C 0.042 3.958 12 F -0.134 7.134 13 C -0.268 4.268 14 C 0.026 3.974 15 O -0.123 6.123 16 C -0.486 4.486 17 H 0.110 0.890 18 C -0.213 4.213 19 N -0.550 5.550 20 Si 0.830 3.170 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.186 1.186 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.568 5.017 -14.035 16.288 hybrid contribution 0.668 -0.521 1.524 1.744 sum -5.899 4.496 -12.510 14.544 Atomic orbital electron populations 1.21957 0.93867 1.02306 1.02071 1.20448 0.96207 0.95495 0.93989 1.21866 1.00890 0.94921 1.02142 1.21958 1.00874 1.00590 0.96759 1.21783 1.00718 0.94173 0.98810 1.21569 0.98788 0.92279 0.86815 1.44672 1.58257 1.08427 1.26717 1.17466 0.98292 0.86217 0.93114 1.20378 1.01503 0.94083 1.00099 1.20802 1.04844 0.95285 0.97370 1.17326 1.02098 0.78782 0.97577 1.91377 1.91502 1.35221 1.95322 1.20853 1.07355 0.95441 1.03131 1.19093 0.95092 0.91314 0.91947 1.83859 1.59524 1.41507 1.27381 1.21631 1.37024 0.97176 0.92816 0.89003 1.26365 0.96160 0.96836 1.01948 1.70136 1.37882 1.11629 1.35395 0.84757 0.79000 0.77677 0.75523 1.18583 1.19380 1.18627 0.93143 0.91408 0.92099 0.92964 0.91304 0.93016 0.92097 0.91419 0.93086 0.92377 0.92284 0.91579 0.91480 0.77112 0.82172 0.82491 0.86023 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.12 71.98 0.58 -1.73 16 2 C -0.06 -1.07 0.80 -52.18 -0.04 -1.11 16 3 C -0.14 -2.32 8.47 71.98 0.61 -1.71 16 4 C -0.14 -2.30 8.12 71.98 0.58 -1.71 16 5 C -0.12 -2.74 4.38 30.59 0.13 -2.60 16 6 C 0.13 3.32 4.21 86.38 0.36 3.68 16 7 N -0.75 -27.36 5.73 -338.86 -1.94 -29.31 16 8 C 0.15 6.16 6.67 38.26 0.26 6.42 16 9 C -0.14 -4.47 9.31 22.38 0.21 -4.26 16 10 C -0.16 -5.38 10.02 22.33 0.22 -5.15 16 11 C 0.06 2.52 7.29 22.37 0.16 2.69 16 12 F -0.16 -5.97 17.26 44.97 0.78 -5.20 16 13 C -0.25 -11.46 9.14 22.42 0.20 -11.26 16 14 C 0.08 3.85 6.67 22.69 0.15 4.00 16 15 O -0.22 -12.44 9.00 -23.05 -0.21 -12.65 16 16 C -0.41 -23.72 9.49 67.91 0.64 -23.07 16 17 H 0.09 5.04 5.21 -2.91 -0.02 5.03 16 18 C -0.01 -0.83 5.49 84.83 0.47 -0.36 16 19 N -0.91 -54.21 13.67 21.61 0.30 -53.92 16 20 Si 1.01 43.07 29.55 68.60 2.03 45.10 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.96 6.43 -2.39 -0.02 0.95 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.96 6.43 -2.39 -0.02 0.94 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.57 6.23 -2.38 -0.01 1.55 16 36 H 0.07 1.58 6.25 -2.39 -0.01 1.57 16 37 H 0.40 16.52 7.84 -92.71 -0.73 15.79 16 38 H 0.16 3.95 6.73 -2.91 -0.02 3.93 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.12 5.89 5.64 -2.91 -0.02 5.87 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -65.36 335.13 5.81 -59.54 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.31 Total: 32.62 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 4.55 Total: -36.20 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.65 Total: -83.22 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.21 Total: -12.65 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -65.36 5.81 -59.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187302825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.092 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds