Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 H 1.09000 * 109.46528 * 179.06605 * 3 2 1 5 5 C 1.50700 * 109.47018 * 299.06331 * 3 2 1 6 6 H 1.07995 * 119.99652 * 120.00186 * 5 3 2 7 7 C 1.37879 * 119.99942 * 300.00336 * 5 3 2 8 8 N 1.31511 * 119.99813 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00246 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46707 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47207 * 210.00057 * 9 7 5 12 12 H 1.48499 * 109.46702 * 330.00220 * 9 7 5 13 13 N 1.46891 * 109.47174 * 59.06709 * 3 2 1 14 14 C 1.46894 * 111.00474 * 86.54280 * 13 3 2 15 15 H 1.09000 * 109.47202 * 326.65647 * 14 13 3 16 16 C 1.52998 * 109.47670 * 86.65436 * 14 13 3 17 17 C 1.50703 * 109.47525 * 206.65973 * 14 13 3 18 18 C 1.38267 * 119.94774 * 319.72308 * 17 14 13 19 19 C 1.38253 * 120.12377 * 179.72332 * 18 17 14 20 20 C 1.38343 * 120.02772 * 0.55193 * 19 18 17 21 21 F 1.35099 * 120.04434 * 179.74913 * 20 19 18 22 22 C 1.38901 * 119.90587 * 359.72358 * 20 19 18 23 23 O 1.35955 * 120.06531 * 180.02562 * 22 20 19 24 24 C 1.42898 * 117.00101 * 179.97438 * 23 22 20 25 25 C 1.38181 * 119.95526 * 139.99362 * 17 14 13 26 26 H 1.08995 * 109.47223 * 56.17408 * 1 2 3 27 27 H 1.09002 * 109.47335 * 176.17847 * 1 2 3 28 28 H 1.09010 * 109.47183 * 296.17389 * 1 2 3 29 29 H 1.08997 * 109.46696 * 239.99853 * 2 1 3 30 30 H 1.09002 * 109.47098 * 120.00147 * 2 1 3 31 31 H 0.97005 * 120.00057 * 179.97438 * 8 7 5 32 32 H 1.00908 * 110.99860 * 210.49606 * 13 3 2 33 33 H 1.09005 * 109.47018 * 300.00899 * 16 14 13 34 34 H 1.09000 * 109.46637 * 59.99864 * 16 14 13 35 35 H 1.08998 * 109.47602 * 180.02562 * 16 14 13 36 36 H 1.07997 * 119.93815 * 359.97438 * 18 17 14 37 37 H 1.07996 * 119.98831 * 180.25278 * 19 18 17 38 38 H 1.08998 * 109.47563 * 60.00094 * 24 23 22 39 39 H 1.09010 * 109.46743 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47191 * 299.99420 * 24 23 22 41 41 H 1.07995 * 120.01326 * 0.02753 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4425 0.0168 5 6 1.5566 2.1461 -1.2419 6 1 0.9343 3.0247 -1.1571 7 6 1.9089 1.6682 -2.4863 8 7 1.4876 2.2826 -3.5701 9 14 2.9859 0.1489 -2.6329 10 1 2.1285 -1.0624 -2.6846 11 1 3.7968 0.2348 -3.8740 12 1 3.8884 0.0667 -1.4565 13 7 1.5320 2.1414 1.1879 14 6 2.4175 1.9318 2.3410 15 1 2.8575 0.9361 2.2850 16 6 3.5299 2.9822 2.3276 17 6 1.6223 2.0586 3.6149 18 6 0.6564 3.0411 3.7307 19 6 -0.0792 3.1570 4.8955 20 6 0.1579 2.2966 5.9526 21 9 -0.5572 2.4128 7.0929 22 6 1.1319 1.3128 5.8396 23 8 1.3673 0.4652 6.8762 24 6 2.3832 -0.5221 6.6891 25 6 1.8634 1.1964 4.6674 26 1 -0.3633 0.5720 -0.8537 27 1 -0.3634 -1.0254 -0.0685 28 1 -0.3634 0.4533 0.9224 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7357 1.9466 -4.4456 32 1 1.4065 3.1254 1.0025 33 1 4.1050 2.8906 1.4062 34 1 3.0899 3.9779 2.3836 35 1 4.1872 2.8264 3.1829 36 1 0.4734 3.7166 2.9082 37 1 -0.8360 3.9226 4.9821 38 1 3.3356 -0.0305 6.4908 39 1 2.4686 -1.1308 7.5895 40 1 2.1201 -1.1587 5.8444 41 1 2.6215 0.4325 4.5773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215533129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -57.668460 kcal Electronic energy + Delta-G solvation = -22457.610663 eV Core-core repulsion = 19059.408367 eV Total energy + Delta-G solvation = -3398.202296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.68525 -40.11245 -38.19271 -36.52330 -33.72837 -31.74814 -30.53661 -29.85724 -28.43181 -27.28889 -26.27300 -23.41960 -23.20744 -22.48593 -20.78426 -19.28266 -18.09167 -16.95513 -16.79742 -16.50812 -16.16403 -15.53879 -15.04458 -14.72129 -14.48998 -14.27805 -14.00488 -13.74663 -13.33735 -13.01664 -12.78505 -12.62351 -12.52062 -12.32108 -12.03928 -11.94501 -11.42621 -11.37518 -11.11019 -10.94981 -10.81658 -10.61584 -10.42909 -10.22594 -10.02992 -9.36502 -9.01825 -8.78777 -8.62629 -8.07498 -7.56459 -6.14379 -4.13432 1.19477 1.35373 3.06774 3.23250 3.31666 3.34154 3.64149 4.29225 4.34048 4.58007 4.82301 4.92146 4.99251 5.08128 5.20884 5.25077 5.31472 5.34443 5.45094 5.52402 5.57783 5.80672 6.00208 6.07934 6.09515 6.15993 6.18988 6.30978 6.37464 6.46212 6.63065 6.69586 6.75657 6.88656 7.07924 7.19765 7.24959 7.45132 7.55671 7.85491 8.25724 8.54479 8.90024 9.48008 10.98383 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.004363 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.951554 B = 6416.715697 C = 6720.262486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.116 3.884 15 H 0.080 0.920 16 C -0.174 4.174 17 C -0.022 4.022 18 C -0.103 4.103 19 C -0.117 4.117 20 C 0.054 3.946 21 F -0.140 7.140 22 C 0.091 3.909 23 O -0.314 6.314 24 C 0.027 3.973 25 C -0.181 4.181 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.342 0.658 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -2.162 17.428 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.297 5.297 14 C 0.005 3.995 15 H 0.098 0.902 16 C -0.233 4.233 17 C -0.023 4.023 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.034 3.966 21 F -0.119 7.119 22 C 0.046 3.954 23 O -0.228 6.228 24 C -0.068 4.068 25 C -0.200 4.200 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.880 -2.676 17.612 17.913 hybrid contribution 1.384 -0.539 -0.451 1.553 sum 3.264 -3.215 17.160 17.761 Atomic orbital electron populations 1.21461 0.95500 0.98285 1.02953 1.21760 0.97479 0.98179 0.97655 1.19577 0.92914 0.91217 0.88502 0.97969 1.21000 1.32540 1.13291 0.88366 0.90316 1.24881 0.95477 0.96681 0.95750 1.69882 1.45333 1.40417 0.97838 0.86882 0.80822 0.83888 0.76780 1.20415 1.22586 1.19463 1.60588 1.47425 1.17030 1.04677 1.20500 0.90763 0.99144 0.89130 0.90184 1.22470 0.99199 0.99551 1.02072 1.19857 0.95118 0.93023 0.94275 1.20792 0.95480 0.99141 0.96728 1.21007 1.01173 0.99075 0.92278 1.16940 0.95597 0.99221 0.84839 1.91460 1.76624 1.95630 1.48140 1.18900 0.96189 0.91864 0.88495 1.86097 1.55939 1.43650 1.37097 1.23079 0.89973 0.90287 1.03456 1.20972 1.03004 1.03194 0.92845 0.91385 0.96208 0.92630 0.94113 0.95266 0.92579 0.83910 0.91663 0.92216 0.92908 0.84496 0.84329 0.92539 0.88241 0.92375 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.22 16 2 C -0.11 -2.40 5.28 -26.73 -0.14 -2.54 16 3 C 0.19 4.07 1.69 -68.87 -0.12 3.95 16 4 H 0.00 0.06 6.29 -51.93 -0.33 -0.26 16 5 C -0.51 -13.36 7.89 -34.44 -0.27 -13.63 16 6 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 9 Si 0.89 21.34 24.38 -169.99 -4.14 17.19 16 10 H -0.28 -6.61 6.86 56.52 0.39 -6.22 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.67 -12.10 4.76 -102.18 -0.49 -12.58 16 14 C 0.12 1.75 2.59 -68.87 -0.18 1.57 16 15 H 0.08 1.25 7.09 -51.93 -0.37 0.88 16 16 C -0.17 -2.38 9.12 37.16 0.34 -2.04 16 17 C -0.02 -0.30 4.95 -104.63 -0.52 -0.82 16 18 C -0.10 -1.38 9.32 -39.57 -0.37 -1.75 16 19 C -0.12 -1.49 10.02 -39.54 -0.40 -1.89 16 20 C 0.05 0.76 7.31 -39.30 -0.29 0.48 16 21 F -0.14 -2.08 17.11 2.25 0.04 -2.04 16 22 C 0.09 1.26 6.69 -39.18 -0.26 1.00 16 23 O -0.31 -4.10 10.36 -19.60 -0.20 -4.30 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.18 -2.36 8.66 -39.45 -0.34 -2.70 16 26 H 0.07 1.57 7.12 -51.93 -0.37 1.20 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 1.10 7.70 -51.92 -0.40 0.70 16 29 H 0.04 0.92 3.25 -51.93 -0.17 0.76 16 30 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.34 6.18 7.33 -39.29 -0.29 5.89 16 33 H 0.06 0.98 7.57 -51.93 -0.39 0.59 16 34 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.14 1.75 7.30 -52.49 -0.38 1.37 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 39 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 41 H 0.13 1.48 6.28 -52.49 -0.33 1.15 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -29.29 328.98 -6.28 -35.57 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.92 Total: 4.21 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.29 Total: -17.42 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.29 Total: -38.17 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.20 Total: -4.30 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.29 -6.28 -35.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215533129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.100 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds