Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 H 1.09000 * 109.46528 * 179.06605 * 3 2 1 5 5 C 1.50700 * 109.47018 * 299.06331 * 3 2 1 6 6 H 1.07995 * 119.99652 * 120.00186 * 5 3 2 7 7 C 1.37879 * 119.99942 * 300.00336 * 5 3 2 8 8 N 1.31511 * 119.99813 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00246 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46707 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47207 * 210.00057 * 9 7 5 12 12 H 1.48499 * 109.46702 * 330.00220 * 9 7 5 13 13 N 1.46891 * 109.47174 * 59.06709 * 3 2 1 14 14 C 1.46894 * 111.00474 * 86.54280 * 13 3 2 15 15 H 1.09000 * 109.47202 * 326.65647 * 14 13 3 16 16 C 1.52998 * 109.47670 * 86.65436 * 14 13 3 17 17 C 1.50703 * 109.47525 * 206.65973 * 14 13 3 18 18 C 1.38267 * 119.94774 * 319.72308 * 17 14 13 19 19 C 1.38253 * 120.12377 * 179.72332 * 18 17 14 20 20 C 1.38343 * 120.02772 * 0.55193 * 19 18 17 21 21 F 1.35099 * 120.04434 * 179.74913 * 20 19 18 22 22 C 1.38901 * 119.90587 * 359.72358 * 20 19 18 23 23 O 1.35955 * 120.06531 * 180.02562 * 22 20 19 24 24 C 1.42898 * 117.00101 * 179.97438 * 23 22 20 25 25 C 1.38181 * 119.95526 * 139.99362 * 17 14 13 26 26 H 1.08995 * 109.47223 * 56.17408 * 1 2 3 27 27 H 1.09002 * 109.47335 * 176.17847 * 1 2 3 28 28 H 1.09010 * 109.47183 * 296.17389 * 1 2 3 29 29 H 1.08997 * 109.46696 * 239.99853 * 2 1 3 30 30 H 1.09002 * 109.47098 * 120.00147 * 2 1 3 31 31 H 0.97005 * 120.00057 * 179.97438 * 8 7 5 32 32 H 1.00908 * 110.99860 * 210.49606 * 13 3 2 33 33 H 1.09005 * 109.47018 * 300.00899 * 16 14 13 34 34 H 1.09000 * 109.46637 * 59.99864 * 16 14 13 35 35 H 1.08998 * 109.47602 * 180.02562 * 16 14 13 36 36 H 1.07997 * 119.93815 * 359.97438 * 18 17 14 37 37 H 1.07996 * 119.98831 * 180.25278 * 19 18 17 38 38 H 1.08998 * 109.47563 * 60.00094 * 24 23 22 39 39 H 1.09010 * 109.46743 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47191 * 299.99420 * 24 23 22 41 41 H 1.07995 * 120.01326 * 0.02753 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4425 0.0168 5 6 1.5566 2.1461 -1.2419 6 1 0.9343 3.0247 -1.1571 7 6 1.9089 1.6682 -2.4863 8 7 1.4876 2.2826 -3.5701 9 14 2.9859 0.1489 -2.6329 10 1 2.1285 -1.0624 -2.6846 11 1 3.7968 0.2348 -3.8740 12 1 3.8884 0.0667 -1.4565 13 7 1.5320 2.1414 1.1879 14 6 2.4175 1.9318 2.3410 15 1 2.8575 0.9361 2.2850 16 6 3.5299 2.9822 2.3276 17 6 1.6223 2.0586 3.6149 18 6 0.6564 3.0411 3.7307 19 6 -0.0792 3.1570 4.8955 20 6 0.1579 2.2966 5.9526 21 9 -0.5572 2.4128 7.0929 22 6 1.1319 1.3128 5.8396 23 8 1.3673 0.4652 6.8762 24 6 2.3832 -0.5221 6.6891 25 6 1.8634 1.1964 4.6674 26 1 -0.3633 0.5720 -0.8537 27 1 -0.3634 -1.0254 -0.0685 28 1 -0.3634 0.4533 0.9224 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7357 1.9466 -4.4456 32 1 1.4065 3.1254 1.0025 33 1 4.1050 2.8906 1.4062 34 1 3.0899 3.9779 2.3836 35 1 4.1872 2.8264 3.1829 36 1 0.4734 3.7166 2.9082 37 1 -0.8360 3.9226 4.9821 38 1 3.3356 -0.0305 6.4908 39 1 2.4686 -1.1308 7.5895 40 1 2.1201 -1.1587 5.8444 41 1 2.6215 0.4325 4.5773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215533129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -75.667265 kcal Electronic energy + Delta-G solvation = -22458.391150 eV Core-core repulsion = 19059.408367 eV Total energy + Delta-G solvation = -3398.982783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.77618 -41.10445 -39.33933 -37.88720 -35.25294 -33.66673 -31.66217 -30.96975 -29.69141 -28.16326 -27.97007 -24.98321 -24.56667 -23.49049 -22.06648 -20.83841 -19.20204 -18.50350 -17.87296 -17.79075 -17.24716 -17.10461 -16.02397 -16.00819 -15.66406 -15.41348 -15.31201 -15.10944 -14.89723 -14.65386 -14.30943 -13.79608 -13.72444 -13.57489 -13.32083 -12.89938 -12.80970 -12.56521 -12.47505 -12.33903 -12.23867 -12.01276 -11.92865 -11.80694 -11.62922 -11.20608 -10.89401 -10.67001 -9.80908 -9.12435 -9.02961 -8.25674 -6.27122 0.15642 0.33868 1.33082 1.35992 1.45444 2.23019 2.33984 2.60369 3.10980 3.27965 3.41002 3.80828 3.86737 4.16551 4.21687 4.29049 4.38955 4.40733 4.44020 4.46916 4.49088 4.58637 4.70164 4.73104 4.80484 4.89149 5.00117 5.04736 5.09844 5.19149 5.26670 5.32077 5.37991 5.46998 5.59711 5.68398 5.73251 5.78997 6.07113 6.31954 6.56459 6.71309 6.90179 7.38324 8.90568 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.004363 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.951554 B = 6416.715697 C = 6720.262486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 C 0.193 3.807 4 H 0.000 1.000 5 C -0.504 4.504 6 H 0.043 0.957 7 C 0.019 3.981 8 N -0.947 5.947 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.303 1.303 12 H -0.248 1.248 13 N -0.666 5.666 14 C 0.119 3.881 15 H 0.082 0.918 16 C -0.169 4.169 17 C -0.028 4.028 18 C -0.110 4.110 19 C -0.111 4.111 20 C 0.033 3.967 21 F -0.148 7.148 22 C 0.088 3.912 23 O -0.332 6.332 24 C 0.017 3.983 25 C -0.177 4.177 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.340 0.660 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -3.687 19.367 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 C 0.084 3.916 4 H 0.018 0.982 5 C -0.542 4.542 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.587 5.587 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.232 1.232 12 H -0.172 1.172 13 N -0.297 5.297 14 C 0.008 3.992 15 H 0.100 0.900 16 C -0.228 4.228 17 C -0.029 4.029 18 C -0.129 4.129 19 C -0.130 4.130 20 C 0.014 3.986 21 F -0.127 7.127 22 C 0.042 3.958 23 O -0.247 6.247 24 C -0.077 4.077 25 C -0.196 4.196 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.994 -4.210 19.591 20.261 hybrid contribution 0.998 -0.014 -0.950 1.378 sum 3.992 -4.224 18.641 19.526 Atomic orbital electron populations 1.21353 0.95250 0.99051 1.01724 1.21754 0.97706 0.97466 0.98387 1.19373 0.92493 0.91722 0.88020 0.98245 1.21257 1.30705 1.12026 0.90228 0.93839 1.25636 0.97059 0.99615 0.95519 1.70027 1.47701 1.42589 0.98431 0.85984 0.79497 0.80553 0.77143 1.19768 1.23155 1.17221 1.60513 1.48291 1.16685 1.04213 1.20507 0.90778 0.99664 0.88210 0.89976 1.22401 0.98887 0.99316 1.02193 1.19767 0.95408 0.93713 0.93982 1.20871 0.95689 0.99309 0.97030 1.21175 1.01179 0.99060 0.91579 1.17252 0.96241 1.00138 0.85009 1.91434 1.76889 1.95747 1.48608 1.19022 0.95999 0.91873 0.88937 1.86087 1.57257 1.44228 1.37095 1.23399 0.89482 0.89798 1.05009 1.21100 1.03176 1.03242 0.92123 0.94749 0.94140 0.91949 0.95279 0.92417 0.92758 0.84125 0.93219 0.91859 0.90719 0.84334 0.82474 0.91268 0.86052 0.91759 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 9.52 71.98 0.69 -3.92 16 2 C -0.12 -4.61 5.28 30.59 0.16 -4.45 16 3 C 0.19 8.18 1.69 44.17 0.07 8.25 16 4 H 0.00 0.00 6.29 -2.39 -0.02 -0.01 16 5 C -0.50 -26.52 7.89 25.60 0.20 -26.32 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 7 C 0.02 1.07 5.45 84.66 0.46 1.53 16 8 N -0.95 -57.25 13.96 21.45 0.30 -56.95 16 9 Si 0.94 43.52 24.38 68.60 1.67 45.19 16 10 H -0.27 -12.21 6.86 99.48 0.68 -11.53 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.25 -10.54 6.53 99.48 0.65 -9.89 16 13 N -0.67 -23.30 4.76 -477.19 -2.27 -25.57 16 14 C 0.12 3.30 2.59 44.17 0.11 3.42 16 15 H 0.08 2.28 7.09 -2.39 -0.02 2.26 16 16 C -0.17 -4.26 9.12 71.98 0.66 -3.60 16 17 C -0.03 -0.71 4.95 -19.87 -0.10 -0.81 16 18 C -0.11 -2.77 9.32 22.28 0.21 -2.56 16 19 C -0.11 -2.67 10.02 22.30 0.22 -2.45 16 20 C 0.03 0.90 7.31 22.45 0.16 1.06 16 21 F -0.15 -4.26 17.11 44.97 0.77 -3.49 16 22 C 0.09 2.24 6.69 22.53 0.15 2.40 16 23 O -0.33 -7.96 10.36 -93.05 -0.96 -8.93 16 24 C 0.02 0.25 9.81 113.37 1.11 1.36 16 25 C -0.18 -4.13 8.66 22.36 0.19 -3.94 16 26 H 0.03 1.56 7.12 -2.39 -0.02 1.55 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 2.35 7.70 -2.38 -0.02 2.33 16 29 H 0.03 1.24 3.25 -2.39 -0.01 1.23 16 30 H 0.06 1.99 7.57 -2.39 -0.02 1.98 16 31 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 32 H 0.34 12.15 7.33 -89.69 -0.66 11.49 16 33 H 0.05 1.40 7.57 -2.38 -0.02 1.39 16 34 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.14 3.38 7.30 -2.91 -0.02 3.36 16 37 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 39 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 41 H 0.15 2.84 6.28 -2.91 -0.02 2.82 16 Total: -1.00 -63.31 328.98 4.12 -59.20 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.30 Total: 20.57 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.31 Total: -30.02 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.97 Total: -82.52 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.96 Total: -8.93 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.77 Total: -3.49 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.67 Total: 45.19 kcal Total: -63.31 4.12 -59.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215533129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.472 kcal (2) G-P(sol) polarization free energy of solvation -63.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds