Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.09000 * 109.46740 * 305.90319 * 3 2 1 5 5 C 1.50699 * 109.46900 * 185.90717 * 3 2 1 6 6 H 1.08003 * 119.99780 * 242.82228 * 5 3 2 7 7 C 1.37878 * 120.00233 * 62.82277 * 5 3 2 8 8 N 1.31513 * 120.00490 * 195.20804 * 7 5 3 9 9 Si 1.86809 * 119.99759 * 15.21105 * 7 5 3 10 10 H 1.48496 * 109.47009 * 90.94896 * 9 7 5 11 11 H 1.48500 * 109.46804 * 210.94615 * 9 7 5 12 12 H 1.48495 * 109.46836 * 330.94519 * 9 7 5 13 13 N 1.46897 * 109.47180 * 65.90738 * 3 2 1 14 14 C 1.46906 * 110.99698 * 205.71234 * 13 3 2 15 15 H 1.09000 * 109.46953 * 323.42706 * 14 13 3 16 16 C 1.52993 * 109.47276 * 83.43089 * 14 13 3 17 17 C 1.50702 * 109.46876 * 203.43312 * 14 13 3 18 18 C 1.38259 * 119.95121 * 319.72151 * 17 14 13 19 19 C 1.38257 * 120.12824 * 180.28003 * 18 17 14 20 20 C 1.38342 * 120.02541 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.04554 * 180.02562 * 20 19 18 22 22 C 1.38905 * 119.90649 * 359.97438 * 20 19 18 23 23 O 1.35950 * 120.06273 * 180.02562 * 22 20 19 24 24 C 1.42899 * 117.00175 * 179.97438 * 23 22 20 25 25 C 1.38185 * 119.95237 * 139.99928 * 17 14 13 26 26 H 1.09003 * 109.47001 * 304.64062 * 1 2 3 27 27 H 1.08996 * 109.47402 * 64.64137 * 1 2 3 28 28 H 1.09004 * 109.47435 * 184.64216 * 1 2 3 29 29 H 1.09000 * 109.46963 * 239.99754 * 2 1 3 30 30 H 1.09003 * 109.46771 * 120.00157 * 2 1 3 31 31 H 0.96993 * 120.00375 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00288 * 81.75593 * 13 3 2 33 33 H 1.08994 * 109.47293 * 304.57605 * 16 14 13 34 34 H 1.09005 * 109.47031 * 64.57610 * 16 14 13 35 35 H 1.09004 * 109.47139 * 184.57066 * 16 14 13 36 36 H 1.08003 * 119.94002 * 0.26222 * 18 17 14 37 37 H 1.08001 * 119.99304 * 179.97438 * 19 18 17 38 38 H 1.09008 * 109.46946 * 59.99864 * 24 23 22 39 39 H 1.08999 * 109.47267 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.47173 * 300.00426 * 24 23 22 41 41 H 1.07999 * 120.01024 * 359.74436 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9858 -0.8324 5 6 3.5398 1.4449 -0.1462 6 1 4.1587 1.8442 0.6437 7 6 4.1220 0.9375 -1.2884 8 7 5.4076 0.6607 -1.3041 9 14 3.0846 0.6430 -2.8138 10 1 3.1033 1.8581 -3.6672 11 1 3.6389 -0.5051 -3.5752 12 1 1.6873 0.3419 -2.4115 13 7 1.6702 2.0926 1.2643 14 6 1.5724 3.5490 1.0984 15 1 2.3421 3.8881 0.4051 16 6 0.1924 3.9076 0.5437 17 6 1.7674 4.2208 2.4333 18 6 1.2004 3.6751 3.5700 19 6 1.3721 4.2915 4.7956 20 6 2.1119 5.4569 4.8867 21 9 2.2804 6.0593 6.0842 22 6 2.6821 6.0062 3.7454 23 8 3.4102 7.1511 3.8314 24 6 3.9674 7.6583 2.6172 25 6 2.5078 5.3844 2.5184 26 1 -0.3633 0.5842 0.8455 27 1 -0.3634 0.4401 -0.9286 28 1 -0.3634 -1.0243 0.0832 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8171 0.3034 -2.1074 32 1 2.3217 1.8550 1.9972 33 1 0.0187 3.3582 -0.3814 34 1 -0.5727 3.6419 1.2732 35 1 0.1480 4.9783 0.3443 36 1 0.6219 2.7657 3.5005 37 1 0.9278 3.8635 5.6821 38 1 3.1651 7.8737 1.9114 39 1 4.5222 8.5730 2.8262 40 1 4.6394 6.9154 2.1876 41 1 2.9498 5.8096 1.6295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215533174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = -63.020016 kcal Electronic energy + Delta-G solvation = -22418.820957 eV Core-core repulsion = 19020.386601 eV Total energy + Delta-G solvation = -3398.434357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.65823 -40.05924 -38.09014 -36.34978 -33.53036 -31.94255 -30.44309 -29.81483 -28.67950 -27.23060 -26.43803 -23.36457 -22.54199 -22.35385 -20.40112 -19.56332 -17.99600 -17.14372 -16.77536 -16.68901 -16.10121 -15.14005 -14.99178 -14.89202 -14.52943 -14.34414 -14.07181 -13.60504 -13.03342 -12.89610 -12.68242 -12.65273 -12.30988 -11.97676 -11.90935 -11.72431 -11.52864 -11.33302 -11.26342 -10.98015 -10.80959 -10.74440 -10.53586 -10.22138 -9.78962 -9.54420 -9.23834 -8.74077 -8.51064 -8.04629 -7.45155 -6.19347 -4.16051 1.21694 1.38144 3.13967 3.22209 3.32685 3.35591 3.67398 4.33147 4.34845 4.67398 4.86900 5.02292 5.08012 5.11816 5.14104 5.34268 5.37445 5.46541 5.56834 5.75606 5.85368 5.99983 6.05878 6.09449 6.12975 6.22532 6.30471 6.33065 6.39984 6.56248 6.68071 6.69647 6.77537 6.80322 7.02643 7.16152 7.30375 7.33532 7.55346 7.97631 8.31669 8.43966 8.87075 9.47325 10.93563 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.004808 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.145110 B = 5822.750786 C = 6488.927654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.188 3.812 4 H 0.029 0.971 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.861 3.139 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.673 5.673 14 C 0.122 3.878 15 H 0.060 0.940 16 C -0.131 4.131 17 C -0.041 4.041 18 C -0.109 4.109 19 C -0.119 4.119 20 C 0.056 3.944 21 F -0.139 7.139 22 C 0.092 3.908 23 O -0.314 6.314 24 C 0.026 3.974 25 C -0.175 4.175 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.263 0.737 32 H 0.338 0.662 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 9.350 6.938 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.079 3.921 4 H 0.047 0.953 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.688 3.312 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.303 5.303 14 C 0.012 3.988 15 H 0.078 0.922 16 C -0.189 4.189 17 C -0.042 4.042 18 C -0.127 4.127 19 C -0.138 4.138 20 C 0.036 3.964 21 F -0.118 7.118 22 C 0.046 3.954 23 O -0.228 6.228 24 C -0.069 4.069 25 C -0.194 4.194 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.925 9.311 6.940 14.646 hybrid contribution 0.881 0.142 -1.120 1.433 sum -8.044 9.452 5.819 13.708 Atomic orbital electron populations 1.21754 0.97980 0.99363 1.00997 1.21835 0.93344 0.98939 1.00744 1.19499 0.94158 0.90889 0.87567 0.95340 1.21684 0.90634 1.42221 1.04583 0.91188 1.24950 0.94685 0.93967 0.98833 1.69995 1.11543 1.42603 1.28554 0.87269 0.82546 0.77925 0.83470 1.20827 1.21412 1.16986 1.60930 1.54782 1.04870 1.09744 1.20366 0.97459 0.89782 0.91184 0.92218 1.21775 0.96240 0.99673 1.01251 1.20038 0.94274 0.93527 0.96341 1.20917 1.00647 1.00743 0.90426 1.21014 0.99243 0.93835 0.99689 1.16970 1.04786 0.95484 0.79187 1.91461 1.94379 1.83016 1.42968 1.18929 0.95031 0.88141 0.93303 1.86088 1.64916 1.37379 1.34398 1.23107 0.98226 0.99669 0.85909 1.21090 1.03959 0.98268 0.96080 0.91986 0.94516 0.94996 0.92946 0.92904 0.92687 0.84454 0.92135 0.92412 0.93450 0.83802 0.84336 0.92477 0.88188 0.92123 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.86 37.16 0.37 -2.14 16 2 C -0.11 -2.29 4.83 -26.73 -0.13 -2.41 16 3 C 0.19 4.07 1.31 -68.87 -0.09 3.98 16 4 H 0.03 0.64 5.80 -51.93 -0.30 0.34 16 5 C -0.55 -14.52 8.76 -34.44 -0.30 -14.82 16 6 H 0.07 2.02 7.95 -52.48 -0.42 1.61 16 7 C 0.08 2.18 5.33 -17.82 -0.09 2.08 16 8 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 9 Si 0.86 20.37 25.76 -169.99 -4.38 15.99 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.25 -5.44 5.39 56.52 0.30 -5.13 16 13 N -0.67 -12.32 4.84 -102.17 -0.49 -12.81 16 14 C 0.12 2.02 2.63 -68.86 -0.18 1.84 16 15 H 0.06 1.12 7.54 -51.93 -0.39 0.73 16 16 C -0.13 -1.91 9.38 37.15 0.35 -1.56 16 17 C -0.04 -0.61 4.71 -104.63 -0.49 -1.11 16 18 C -0.11 -1.48 9.04 -39.57 -0.36 -1.84 16 19 C -0.12 -1.55 10.02 -39.54 -0.40 -1.95 16 20 C 0.06 0.82 7.31 -39.30 -0.29 0.53 16 21 F -0.14 -2.14 17.11 2.25 0.04 -2.10 16 22 C 0.09 1.36 6.69 -39.18 -0.26 1.10 16 23 O -0.31 -4.46 10.36 -19.58 -0.20 -4.66 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 C -0.17 -2.53 8.66 -39.45 -0.34 -2.87 16 26 H 0.06 1.03 7.66 -51.93 -0.40 0.63 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.16 4.67 -51.93 -0.24 0.92 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.34 6.45 7.72 -39.29 -0.30 6.14 16 33 H 0.06 0.93 7.27 -51.93 -0.38 0.56 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.14 1.85 7.72 -52.48 -0.40 1.44 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.06 0.52 7.66 -51.92 -0.40 0.12 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 41 H 0.14 1.80 6.28 -52.49 -0.33 1.47 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -29.19 333.12 -6.62 -35.82 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.15 Total: 6.19 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.23 Total: -17.91 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.28 Total: -38.35 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.38 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.19 -6.62 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215533174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.202 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds