Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.09000 * 109.46740 * 305.90319 * 3 2 1 5 5 C 1.50699 * 109.46900 * 185.90717 * 3 2 1 6 6 H 1.08003 * 119.99780 * 242.82228 * 5 3 2 7 7 C 1.37878 * 120.00233 * 62.82277 * 5 3 2 8 8 N 1.31513 * 120.00490 * 195.20804 * 7 5 3 9 9 Si 1.86809 * 119.99759 * 15.21105 * 7 5 3 10 10 H 1.48496 * 109.47009 * 90.94896 * 9 7 5 11 11 H 1.48500 * 109.46804 * 210.94615 * 9 7 5 12 12 H 1.48495 * 109.46836 * 330.94519 * 9 7 5 13 13 N 1.46897 * 109.47180 * 65.90738 * 3 2 1 14 14 C 1.46906 * 110.99698 * 205.71234 * 13 3 2 15 15 H 1.09000 * 109.46953 * 323.42706 * 14 13 3 16 16 C 1.52993 * 109.47276 * 83.43089 * 14 13 3 17 17 C 1.50702 * 109.46876 * 203.43312 * 14 13 3 18 18 C 1.38259 * 119.95121 * 319.72151 * 17 14 13 19 19 C 1.38257 * 120.12824 * 180.28003 * 18 17 14 20 20 C 1.38342 * 120.02541 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.04554 * 180.02562 * 20 19 18 22 22 C 1.38905 * 119.90649 * 359.97438 * 20 19 18 23 23 O 1.35950 * 120.06273 * 180.02562 * 22 20 19 24 24 C 1.42899 * 117.00175 * 179.97438 * 23 22 20 25 25 C 1.38185 * 119.95237 * 139.99928 * 17 14 13 26 26 H 1.09003 * 109.47001 * 304.64062 * 1 2 3 27 27 H 1.08996 * 109.47402 * 64.64137 * 1 2 3 28 28 H 1.09004 * 109.47435 * 184.64216 * 1 2 3 29 29 H 1.09000 * 109.46963 * 239.99754 * 2 1 3 30 30 H 1.09003 * 109.46771 * 120.00157 * 2 1 3 31 31 H 0.96993 * 120.00375 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00288 * 81.75593 * 13 3 2 33 33 H 1.08994 * 109.47293 * 304.57605 * 16 14 13 34 34 H 1.09005 * 109.47031 * 64.57610 * 16 14 13 35 35 H 1.09004 * 109.47139 * 184.57066 * 16 14 13 36 36 H 1.08003 * 119.94002 * 0.26222 * 18 17 14 37 37 H 1.08001 * 119.99304 * 179.97438 * 19 18 17 38 38 H 1.09008 * 109.46946 * 59.99864 * 24 23 22 39 39 H 1.08999 * 109.47267 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.47173 * 300.00426 * 24 23 22 41 41 H 1.07999 * 120.01024 * 359.74436 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9858 -0.8324 5 6 3.5398 1.4449 -0.1462 6 1 4.1587 1.8442 0.6437 7 6 4.1220 0.9375 -1.2884 8 7 5.4076 0.6607 -1.3041 9 14 3.0846 0.6430 -2.8138 10 1 3.1033 1.8581 -3.6672 11 1 3.6389 -0.5051 -3.5752 12 1 1.6873 0.3419 -2.4115 13 7 1.6702 2.0926 1.2643 14 6 1.5724 3.5490 1.0984 15 1 2.3421 3.8881 0.4051 16 6 0.1924 3.9076 0.5437 17 6 1.7674 4.2208 2.4333 18 6 1.2004 3.6751 3.5700 19 6 1.3721 4.2915 4.7956 20 6 2.1119 5.4569 4.8867 21 9 2.2804 6.0593 6.0842 22 6 2.6821 6.0062 3.7454 23 8 3.4102 7.1511 3.8314 24 6 3.9674 7.6583 2.6172 25 6 2.5078 5.3844 2.5184 26 1 -0.3633 0.5842 0.8455 27 1 -0.3634 0.4401 -0.9286 28 1 -0.3634 -1.0243 0.0832 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8171 0.3034 -2.1074 32 1 2.3217 1.8550 1.9972 33 1 0.0187 3.3582 -0.3814 34 1 -0.5727 3.6419 1.2732 35 1 0.1480 4.9783 0.3443 36 1 0.6219 2.7657 3.5005 37 1 0.9278 3.8635 5.6821 38 1 3.1651 7.8737 1.9114 39 1 4.5222 8.5730 2.8262 40 1 4.6394 6.9154 2.1876 41 1 2.9498 5.8096 1.6295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215533174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = -80.826274 kcal Electronic energy + Delta-G solvation = -22419.593095 eV Core-core repulsion = 19020.386601 eV Total energy + Delta-G solvation = -3399.206494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.81554 -41.15881 -39.30677 -37.79194 -35.07306 -33.85437 -31.62242 -31.03970 -29.93240 -28.32646 -28.05662 -24.77108 -23.94374 -23.55016 -21.73231 -21.14682 -19.27668 -18.89856 -17.99689 -17.82894 -17.16642 -16.88532 -16.27861 -16.05911 -15.88413 -15.46550 -15.26138 -15.07853 -14.78586 -14.30044 -14.11141 -13.82453 -13.66023 -13.40139 -13.18952 -13.02098 -12.80441 -12.70599 -12.50716 -12.40402 -12.22613 -12.14483 -11.94747 -11.68651 -11.47468 -11.32186 -11.01198 -10.58379 -9.85279 -9.16955 -9.06737 -8.32199 -6.32147 0.08767 0.28101 1.34006 1.38881 1.48347 2.17257 2.35033 2.55600 3.03744 3.22048 3.42631 3.73716 3.79828 4.13248 4.28258 4.30913 4.35514 4.45494 4.50914 4.56822 4.60216 4.65582 4.66524 4.78083 4.89961 4.95450 4.99589 5.08435 5.13268 5.24450 5.30952 5.37208 5.45441 5.52477 5.58076 5.63288 5.69888 5.78783 6.13640 6.24774 6.44252 6.67306 6.83777 7.35418 8.84229 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.004808 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.145110 B = 5822.750786 C = 6488.927654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.195 3.805 4 H 0.030 0.970 5 C -0.549 4.549 6 H 0.028 0.972 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.217 1.217 13 N -0.657 5.657 14 C 0.123 3.877 15 H 0.030 0.970 16 C -0.125 4.125 17 C -0.051 4.051 18 C -0.107 4.107 19 C -0.107 4.107 20 C 0.038 3.962 21 F -0.145 7.145 22 C 0.084 3.916 23 O -0.331 6.331 24 C 0.019 3.981 25 C -0.182 4.182 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.332 0.668 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 9.484 6.966 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.085 3.915 4 H 0.047 0.953 5 C -0.587 4.587 6 H 0.046 0.954 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.746 3.254 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.139 1.139 13 N -0.286 5.286 14 C 0.013 3.987 15 H 0.048 0.952 16 C -0.183 4.183 17 C -0.052 4.052 18 C -0.125 4.125 19 C -0.126 4.126 20 C 0.018 3.982 21 F -0.124 7.124 22 C 0.038 3.962 23 O -0.245 6.245 24 C -0.075 4.075 25 C -0.201 4.201 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.557 9.462 6.979 16.486 hybrid contribution 1.784 0.180 -1.030 2.068 sum -9.772 9.642 5.949 14.962 Atomic orbital electron populations 1.21656 0.94808 1.00972 1.01700 1.21764 0.96105 0.97382 0.99745 1.19370 0.90795 0.92235 0.89096 0.95257 1.22020 0.93060 1.40564 1.03088 0.95366 1.25797 0.95695 0.94094 1.02106 1.70140 1.13743 1.44857 1.29467 0.86288 0.82304 0.77569 0.79223 1.20602 1.21787 1.13939 1.60963 1.53696 1.06042 1.07914 1.20371 0.98027 0.88515 0.91751 0.95150 1.21726 0.94895 1.00651 1.01028 1.19965 0.95256 0.93893 0.96044 1.21024 1.00449 1.00952 0.90102 1.21273 0.98049 0.92800 1.00454 1.17286 1.05566 0.96276 0.79034 1.91442 1.94506 1.83233 1.43224 1.19074 0.95173 0.88505 0.93420 1.86070 1.64902 1.37143 1.36373 1.23371 0.98673 1.00381 0.85113 1.21145 1.04127 0.98424 0.96384 0.90982 0.94047 0.93039 0.94440 0.93590 0.92789 0.85116 0.92891 0.91005 0.91867 0.82623 0.81522 0.91305 0.85627 0.92630 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.86 71.98 0.71 -3.47 16 2 C -0.11 -4.41 4.83 30.59 0.15 -4.26 16 3 C 0.19 8.28 1.31 44.17 0.06 8.34 16 4 H 0.03 1.27 5.80 -2.39 -0.01 1.25 16 5 C -0.55 -29.46 8.76 25.60 0.22 -29.24 16 6 H 0.03 1.71 7.95 -2.91 -0.02 1.68 16 7 C 0.02 1.22 5.33 84.66 0.45 1.67 16 8 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 9 Si 0.92 41.94 25.76 68.60 1.77 43.71 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.22 -8.79 5.39 99.48 0.54 -8.25 16 13 N -0.66 -23.39 4.84 -477.17 -2.31 -25.70 16 14 C 0.12 3.97 2.63 44.17 0.12 4.08 16 15 H 0.03 1.16 7.54 -2.39 -0.02 1.14 16 16 C -0.13 -3.34 9.38 71.98 0.68 -2.67 16 17 C -0.05 -1.47 4.71 -19.87 -0.09 -1.56 16 18 C -0.11 -2.71 9.04 22.28 0.20 -2.50 16 19 C -0.11 -2.57 10.02 22.30 0.22 -2.35 16 20 C 0.04 1.09 7.31 22.45 0.16 1.25 16 21 F -0.15 -4.32 17.11 44.97 0.77 -3.55 16 22 C 0.08 2.46 6.69 22.53 0.15 2.61 16 23 O -0.33 -9.23 10.36 -92.98 -0.96 -10.19 16 24 C 0.02 0.37 9.81 113.37 1.11 1.48 16 25 C -0.18 -5.20 8.66 22.36 0.19 -5.00 16 26 H 0.07 2.11 7.66 -2.39 -0.02 2.09 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.04 1.58 4.67 -2.39 -0.01 1.57 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.33 12.60 7.72 -89.69 -0.69 11.91 16 33 H 0.05 1.49 7.27 -2.39 -0.02 1.48 16 34 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.16 3.56 7.72 -2.91 -0.02 3.54 16 37 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 39 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 41 H 0.14 3.76 6.28 -2.91 -0.02 3.74 16 Total: -1.00 -64.08 333.12 4.07 -60.02 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.17 Total: 24.63 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.33 Total: -31.63 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.01 Total: -82.98 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.96 Total: -10.19 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.77 Total: -3.55 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.77 Total: 43.71 kcal Total: -64.08 4.07 -60.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215533174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.811 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds