Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 116.99768 * 2 1 4 4 C 1.38764 * 120.04633 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.99819 * 179.70096 * 4 3 2 6 6 C 1.38255 * 120.07917 * 0.53328 * 5 4 3 7 7 C 1.50695 * 119.95983 * 179.76485 * 6 5 4 8 8 N 1.46900 * 109.47404 * 265.21206 * 7 6 5 9 9 C 1.46903 * 110.99877 * 284.44795 * 8 7 6 10 10 C 1.50697 * 109.47218 * 175.54384 * 9 8 7 11 11 H 1.08002 * 120.00059 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00394 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99578 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00283 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47077 * 120.00348 * 14 12 10 17 17 H 1.48494 * 109.47508 * 240.00359 * 14 12 10 18 18 C 1.46898 * 111.00363 * 160.49424 * 8 7 6 19 19 C 1.52997 * 109.46901 * 293.70543 * 18 8 7 20 20 C 1.53003 * 109.47150 * 53.70079 * 18 8 7 21 21 C 1.38481 * 120.08131 * 359.49044 * 6 5 4 22 22 F 1.35098 * 119.99532 * 180.25462 * 21 6 5 23 23 C 1.38382 * 120.00718 * 0.23234 * 21 6 5 24 24 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47556 * 300.00209 * 1 2 3 26 26 H 1.09004 * 109.47197 * 60.00528 * 1 2 3 27 27 H 1.08003 * 120.00159 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.96565 * 180.29959 * 5 4 3 29 29 H 1.09006 * 109.47215 * 145.21107 * 7 6 5 30 30 H 1.09003 * 109.47099 * 25.21483 * 7 6 5 31 31 H 1.08999 * 109.47192 * 295.54767 * 9 8 7 32 32 H 1.09007 * 109.46841 * 55.54867 * 9 8 7 33 33 H 0.96999 * 119.99604 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47481 * 173.70240 * 18 8 7 35 35 H 1.08997 * 109.47508 * 66.34329 * 19 18 8 36 36 H 1.09006 * 109.46951 * 186.34305 * 19 18 8 37 37 H 1.09001 * 109.47330 * 306.33981 * 19 18 8 38 38 H 1.09001 * 109.46834 * 60.00139 * 20 18 8 39 39 H 1.08993 * 109.47186 * 179.97438 * 20 18 8 40 40 H 1.08999 * 109.47060 * 300.00419 * 20 18 8 41 41 H 1.07991 * 120.04024 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9191 3.6055 0.0068 6 6 3.2997 3.6787 0.0014 7 6 3.9821 5.0223 0.0028 8 7 4.3013 5.4110 -1.3774 9 6 5.4580 4.6591 -1.8819 10 6 5.6875 5.0030 -3.3310 11 1 5.0392 5.7099 -3.8275 12 6 6.7258 4.4162 -4.0229 13 7 7.5156 3.5558 -3.4182 14 14 7.0106 4.8431 -5.8189 15 1 5.9924 5.8295 -6.2608 16 1 8.3668 5.4263 -5.9800 17 1 6.8996 3.6133 -6.6438 18 6 4.5302 6.8586 -1.4772 19 6 3.2249 7.6024 -1.1878 20 6 5.5927 7.2782 -0.4593 21 6 4.0563 2.5188 0.0003 22 9 5.4052 2.5924 0.0002 23 6 3.4307 1.2845 -0.0002 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 0.2124 2.3196 0.0005 28 1 1.3311 4.5113 0.0121 29 1 4.9015 4.9622 0.5853 30 1 3.3194 5.7659 0.4457 31 1 6.3428 4.9210 -1.3017 32 1 5.2654 3.5902 -1.7883 33 1 8.2462 3.1433 -3.9048 34 1 4.8731 7.1038 -2.4823 35 1 2.9414 7.4475 -0.1469 36 1 3.3655 8.6677 -1.3714 37 1 2.4380 7.2223 -1.8392 38 1 6.5226 6.7483 -0.6654 39 1 5.7629 8.3522 -0.5337 40 1 5.2498 7.0330 0.5459 41 1 4.0202 0.3797 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228602328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = -52.677051 kcal Electronic energy + Delta-G solvation = -22806.411077 eV Core-core repulsion = 19408.425224 eV Total energy + Delta-G solvation = -3397.985852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.38794 -39.93129 -38.10178 -36.69520 -32.70330 -31.83888 -30.61394 -29.60839 -27.73724 -26.67764 -26.47422 -24.28531 -22.69905 -21.95212 -21.14920 -18.69633 -18.23151 -16.75080 -16.11532 -15.86224 -15.79135 -15.55304 -15.16666 -14.67314 -14.50077 -14.20920 -13.86773 -13.54732 -13.06114 -12.86116 -12.54821 -12.40419 -12.26234 -12.15192 -11.96600 -11.48864 -11.30516 -11.13708 -11.03188 -10.79378 -10.65928 -10.58249 -10.54479 -10.37327 -9.90851 -9.67924 -8.99702 -8.55956 -8.35748 -7.91326 -7.13078 -5.93932 -3.94884 1.45314 1.55573 3.21217 3.34637 3.42066 3.46275 3.82802 4.49143 4.77611 4.85269 5.02241 5.04295 5.07307 5.15337 5.33479 5.36968 5.41934 5.50227 5.59951 5.61111 5.81410 5.87568 6.05979 6.07560 6.11507 6.27376 6.29903 6.32085 6.36488 6.47179 6.57293 6.74133 6.84438 6.95479 6.98476 7.44021 7.48518 7.53950 7.86516 8.19942 8.30664 8.64041 9.12665 9.68148 11.16584 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.005800 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.066660 B = 4826.553433 C = 5774.755369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.144 3.856 4 C -0.224 4.224 5 C -0.039 4.039 6 C -0.128 4.128 7 C 0.092 3.908 8 N -0.525 5.525 9 C 0.186 3.814 10 C -0.508 4.508 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.079 3.921 19 C -0.141 4.141 20 C -0.180 4.180 21 C 0.157 3.843 22 F -0.118 7.118 23 C -0.192 4.192 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.038 0.962 30 H 0.074 0.926 31 H -0.006 1.006 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 -0.888 9.381 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.099 3.901 4 C -0.243 4.243 5 C -0.058 4.058 6 C -0.130 4.130 7 C -0.036 4.036 8 N -0.249 5.249 9 C 0.061 3.939 10 C -0.546 4.546 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.029 4.029 19 C -0.199 4.199 20 C -0.239 4.239 21 C 0.137 3.863 22 F -0.096 7.096 23 C -0.211 4.211 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.012 0.988 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.315 -1.304 9.045 16.149 hybrid contribution 1.029 0.373 -0.591 1.243 sum -12.286 -0.931 8.455 14.943 Atomic orbital electron populations 1.23033 0.78502 1.03677 1.01421 1.86045 1.21259 1.26939 1.88845 1.18513 0.91310 0.84156 0.96107 1.21137 0.99853 0.92154 1.11131 1.20581 0.92887 0.97052 0.95237 1.19869 0.93871 0.94718 1.04526 1.20892 0.98098 0.91859 0.92780 1.62431 1.42330 1.04085 1.16011 1.19941 0.85077 0.94208 0.94698 1.21217 1.12673 1.25115 0.95616 0.91998 1.24964 0.96104 0.95278 0.98153 1.69992 1.17981 1.28982 1.36360 0.86531 0.77854 0.78201 0.85373 1.19739 1.21202 1.21106 1.21628 0.92982 0.88185 1.00152 1.21889 0.98486 0.98893 1.00627 1.22431 1.01411 1.00722 0.99306 1.17180 0.77564 0.93007 0.98568 1.91588 1.28205 1.96952 1.92858 1.20183 0.92427 0.97625 1.10912 0.88454 0.92718 0.92519 0.85378 0.85118 0.94379 0.90743 0.98813 0.94164 0.93125 0.88622 0.93712 0.93316 0.92243 0.91821 0.93385 0.93699 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.31 10.50 -19.42 -0.20 -4.51 16 3 C 0.14 2.20 6.68 -39.22 -0.26 1.93 16 4 C -0.22 -3.04 9.04 -39.43 -0.36 -3.40 16 5 C -0.04 -0.57 9.67 -39.61 -0.38 -0.96 16 6 C -0.13 -2.29 5.23 -104.53 -0.55 -2.84 16 7 C 0.09 1.68 3.59 -4.98 -0.02 1.66 16 8 N -0.52 -11.24 4.41 -229.52 -1.01 -12.25 16 9 C 0.19 4.88 3.76 -4.98 -0.02 4.86 16 10 C -0.51 -14.41 8.34 -34.44 -0.29 -14.70 16 11 H 0.06 1.74 6.78 -52.49 -0.36 1.38 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 14 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 C 0.08 1.51 2.74 -67.71 -0.19 1.33 16 19 C -0.14 -2.14 9.02 37.16 0.34 -1.81 16 20 C -0.18 -3.20 8.52 37.16 0.32 -2.89 16 21 C 0.16 3.02 6.27 -39.44 -0.25 2.78 16 22 F -0.12 -2.60 14.32 2.25 0.03 -2.57 16 23 C -0.19 -3.31 9.97 -39.37 -0.39 -3.70 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.04 0.74 6.94 -51.93 -0.36 0.38 16 30 H 0.07 1.16 5.89 -51.93 -0.31 0.85 16 31 H -0.01 -0.17 6.61 -51.93 -0.34 -0.51 16 32 H 0.04 1.15 5.06 -51.93 -0.26 0.89 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.10 2.06 6.23 -51.93 -0.32 1.74 16 35 H 0.04 0.61 6.52 -51.93 -0.34 0.27 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.31 6.69 -51.93 -0.35 0.97 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.73 6.75 -51.93 -0.35 0.38 16 41 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -31.85 327.56 -7.47 -39.32 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.79 Total: -0.59 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.15 Total: -14.94 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.28 Total: -38.67 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.85 -7.47 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228602328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.354 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds