Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47151 * 2 1 4 4 C 1.53005 * 109.46879 * 119.99247 * 2 1 3 5 5 C 1.50702 * 109.46948 * 185.00215 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46896 * 109.47303 * 239.99475 * 2 1 3 11 11 C 1.46908 * 110.99806 * 85.00016 * 10 2 1 12 12 C 1.53003 * 109.46927 * 180.02562 * 11 10 2 13 13 C 1.52999 * 109.46954 * 299.99755 * 12 11 10 14 14 C 1.52994 * 109.47007 * 59.99871 * 12 11 10 15 15 C 1.52992 * 109.46898 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47332 * 179.97438 * 15 12 11 17 17 H 1.08007 * 119.99750 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00302 * 179.97438 * 16 15 12 19 19 N 1.31516 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46889 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47490 * 119.99808 * 20 18 16 23 23 H 1.48502 * 109.47129 * 240.00244 * 20 18 16 24 24 H 1.09000 * 109.47243 * 300.00232 * 1 2 3 25 25 H 1.09004 * 109.47193 * 60.00593 * 1 2 3 26 26 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46850 * 65.00456 * 4 2 1 28 28 H 1.08995 * 109.47365 * 305.00464 * 4 2 1 29 29 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 30 30 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 31 31 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 32 32 H 1.00896 * 111.00120 * 321.05036 * 10 2 1 33 33 H 1.08997 * 109.46831 * 300.00030 * 11 10 2 34 34 H 1.08999 * 109.46904 * 60.00224 * 11 10 2 35 35 H 1.09003 * 109.46968 * 60.00555 * 13 12 11 36 36 H 1.09004 * 109.47069 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47678 * 300.00292 * 13 12 11 38 38 H 1.09000 * 109.47025 * 60.00190 * 14 12 11 39 39 H 1.09008 * 109.47012 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47615 * 299.99874 * 14 12 11 41 41 H 1.09000 * 109.47233 * 299.99870 * 15 12 11 42 42 H 1.09001 * 109.47530 * 60.00166 * 15 12 11 43 43 H 0.97001 * 119.99940 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6147 1.3129 6 6 4.2186 0.3640 1.9155 7 6 5.5964 0.2509 1.8431 8 6 6.0384 -0.8170 1.1773 9 16 4.6705 -1.7618 0.6030 10 7 2.0197 -0.6926 -1.1993 11 6 2.0825 0.2225 -2.3469 12 6 2.5951 -0.5334 -3.5744 13 6 3.9922 -1.0864 -3.2861 14 6 1.6453 -1.6891 -3.8950 15 6 2.6611 0.4197 -4.7694 16 6 3.1666 -0.3245 -5.9783 17 1 3.4163 -1.3726 -5.9019 18 6 3.3104 0.3323 -7.1820 19 7 3.0069 1.6086 -7.2750 20 14 3.9363 -0.5905 -8.6807 21 1 4.2050 -2.0044 -8.3148 22 1 2.9121 -0.5427 -9.7549 23 1 5.1900 0.0422 -9.1636 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7516 -1.7714 1.2058 28 1 1.6053 -0.2616 2.1370 29 1 3.7288 1.1825 2.4220 30 1 6.2628 0.9749 2.2881 31 1 7.0773 -1.0647 1.0170 32 1 1.4496 -1.4980 -1.4099 33 1 1.0871 0.6161 -2.5525 34 1 2.7589 1.0461 -2.1182 35 1 3.9456 -1.7654 -2.4346 36 1 4.3573 -1.6253 -4.1604 37 1 4.6690 -0.2631 -3.0576 38 1 0.6499 -1.2951 -4.1005 39 1 2.0102 -2.2274 -4.7699 40 1 1.5986 -2.3681 -3.0436 41 1 1.6660 0.8141 -4.9749 42 1 3.3381 1.2429 -4.5407 43 1 3.1077 2.0706 -8.1219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229679419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = 6.343159 kcal Electronic energy + Delta-G solvation = -20347.783851 eV Core-core repulsion = 17518.570483 eV Total energy + Delta-G solvation = -2829.213368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.44071 -37.43404 -35.59993 -32.52298 -31.19566 -29.27347 -26.83452 -26.34302 -26.25437 -24.96887 -23.08888 -22.31496 -20.77672 -18.99764 -17.88778 -16.95783 -16.19481 -15.46966 -15.12646 -14.77381 -14.42006 -14.24450 -13.51308 -13.16332 -13.08707 -12.79757 -12.69430 -12.49551 -12.32626 -12.02767 -11.94203 -11.65065 -11.48026 -11.31952 -10.96175 -10.93475 -10.76619 -10.71847 -10.48179 -10.41696 -10.20705 -10.06036 -9.63343 -8.97095 -8.78693 -8.46140 -8.29082 -8.18422 -7.94395 -5.93434 -3.93137 1.21607 1.89862 2.28409 2.90784 3.34059 3.41901 3.45497 4.41517 4.53507 4.77544 5.05185 5.17206 5.21145 5.37422 5.41550 5.42613 5.64176 5.68347 5.70498 5.77672 5.82160 5.85176 5.98755 6.04355 6.13404 6.27946 6.33953 6.40816 6.46614 6.57576 6.65894 6.74884 6.86259 6.89662 7.26953 7.30524 7.33486 7.47124 7.72848 7.77073 7.90621 8.07456 8.52281 9.12646 9.69586 11.18343 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.004331 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.365075 B = 6463.230418 C = 7152.409482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.038 4.038 5 C -0.145 4.145 6 C -0.162 4.162 7 C -0.136 4.136 8 C -0.235 4.235 9 S 0.141 5.859 10 N -0.677 5.677 11 C 0.074 3.926 12 C -0.057 4.057 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.034 3.966 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.011 0.989 42 H 0.014 0.986 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -4.908 19.430 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.096 0.904 4 C -0.078 4.078 5 C -0.263 4.263 6 C -0.192 4.192 7 C -0.167 4.167 8 C -0.371 4.371 9 S 0.406 5.594 10 N -0.309 5.309 11 C -0.055 4.055 12 C -0.057 4.057 13 C -0.172 4.172 14 C -0.185 4.185 15 C -0.004 4.004 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.403 -6.041 18.640 19.599 hybrid contribution -0.369 1.258 -0.463 1.390 sum -0.772 -4.783 18.178 18.812 Atomic orbital electron populations 1.22501 0.97273 1.02017 1.02242 1.21562 0.92014 0.98279 0.90744 0.90385 1.20204 0.88268 1.01475 0.97871 1.24291 0.99267 0.99592 1.03195 1.19980 0.93636 1.00510 1.05045 1.20026 0.95339 0.99000 1.02321 1.25634 1.02739 1.01794 1.06965 1.84345 0.95198 1.25953 1.53920 1.60654 1.56503 1.09914 1.03811 1.22087 0.98567 0.94871 0.89967 1.20604 0.94955 0.96020 0.94155 1.21597 0.95769 0.99889 0.99936 1.21759 0.98638 0.97891 1.00224 1.19122 0.96735 0.93708 0.90832 1.21284 1.42526 0.96334 0.94086 0.92257 1.25013 0.95931 0.94819 0.98860 1.69980 1.49457 1.08983 1.25412 0.86626 0.78479 0.80118 0.83327 1.19767 1.21228 1.21185 0.92406 0.92232 0.92529 0.90972 0.90347 0.85194 0.85194 0.82621 0.84343 0.95998 0.91824 0.93478 0.92991 0.94387 0.94244 0.91830 0.94836 0.97046 0.96785 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.16 37.16 0.34 -1.49 16 2 C 0.09 0.99 2.58 -67.71 -0.17 0.81 16 3 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 4 C -0.04 -0.40 5.39 -27.88 -0.15 -0.55 16 5 C -0.15 -1.75 5.49 -36.00 -0.20 -1.95 16 6 C -0.16 -1.91 10.05 -41.21 -0.41 -2.32 16 7 C -0.14 -1.60 10.18 -41.21 -0.42 -2.02 16 8 C -0.24 -2.83 11.23 29.04 0.33 -2.51 16 9 S 0.14 1.78 23.33 -107.50 -2.51 -0.73 16 10 N -0.68 -9.32 5.18 -106.72 -0.55 -9.88 16 11 C 0.07 1.26 4.45 -3.82 -0.02 1.24 16 12 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 13 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 14 C -0.13 -2.36 7.89 37.15 0.29 -2.07 16 15 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 16 C -0.50 -13.88 7.65 -34.44 -0.26 -14.14 16 17 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.34 4.49 6.51 -39.29 -0.26 4.24 16 33 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 34 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 35 H 0.05 0.82 7.60 -51.93 -0.39 0.43 16 36 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.29 6.62 -51.92 -0.34 0.94 16 40 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -29.52 352.83 -10.07 -39.58 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.36 Total: 1.30 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -0.68 Total: -25.98 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.18 Total: -36.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.51 Total: -0.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.52 -10.07 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229679419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.928 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds