Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46562 * 2 1 4 4 C 1.52995 * 109.47267 * 239.99469 * 2 1 3 5 5 C 1.50702 * 109.47096 * 175.00127 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46900 * 109.47052 * 119.99350 * 2 1 3 11 11 C 1.46902 * 111.00083 * 275.00453 * 10 2 1 12 12 C 1.53002 * 109.47136 * 179.97438 * 11 10 2 13 13 C 1.53004 * 109.47005 * 300.00166 * 12 11 10 14 14 C 1.53004 * 109.47108 * 59.99899 * 12 11 10 15 15 C 1.53000 * 109.47375 * 179.97438 * 12 11 10 16 16 C 1.50695 * 109.47152 * 180.02562 * 15 12 11 17 17 H 1.07995 * 120.00301 * 359.97438 * 16 15 12 18 18 C 1.37875 * 119.99956 * 180.02562 * 16 15 12 19 19 N 1.31523 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47056 * 59.99779 * 20 18 16 22 22 H 1.48508 * 109.47137 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46911 * 299.99547 * 20 18 16 24 24 H 1.09001 * 109.47776 * 300.00459 * 1 2 3 25 25 H 1.09001 * 109.46885 * 60.00703 * 1 2 3 26 26 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46856 * 55.00072 * 4 2 1 28 28 H 1.08996 * 109.47050 * 295.00215 * 4 2 1 29 29 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 30 30 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 31 31 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 32 32 H 1.00906 * 111.00108 * 38.95404 * 10 2 1 33 33 H 1.09001 * 109.46934 * 299.99888 * 11 10 2 34 34 H 1.08997 * 109.47485 * 59.99955 * 11 10 2 35 35 H 1.08990 * 109.47118 * 59.99914 * 13 12 11 36 36 H 1.09008 * 109.46675 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46964 * 299.99477 * 13 12 11 38 38 H 1.09001 * 109.47095 * 59.99863 * 14 12 11 39 39 H 1.08996 * 109.47114 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.46568 * 300.00142 * 14 12 11 41 41 H 1.09001 * 109.47004 * 300.00245 * 15 12 11 42 42 H 1.09001 * 109.46565 * 59.99801 * 15 12 11 43 43 H 0.96991 * 119.99823 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 6 4.3978 -1.4851 -0.7745 7 6 5.7350 -1.1797 -0.9617 8 6 5.9649 -0.0588 -1.6472 9 16 4.4343 0.6752 -2.1079 10 7 2.0196 -0.6924 1.1995 11 6 2.0823 0.2228 2.3469 12 6 2.5949 -0.5328 3.5746 13 6 1.6450 -1.6886 3.8954 14 6 3.9920 -1.0860 3.2865 15 6 2.6608 0.4204 4.7695 16 6 3.1662 -0.3237 5.9785 17 1 3.4151 -1.3718 5.9024 18 6 3.3099 0.3333 7.1821 19 7 3.0063 1.6096 7.2750 20 14 3.9358 -0.5893 8.6810 21 1 5.2917 -1.1262 8.4012 22 1 3.9998 0.3361 9.8407 23 1 3.0137 -1.7109 8.9924 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -0.2619 -2.1368 28 1 1.7516 -1.7715 -1.2054 29 1 4.0723 -2.3612 -0.2334 30 1 6.5316 -1.7996 -0.5777 31 1 6.9415 0.3365 -1.8847 32 1 1.4495 -1.4978 1.4102 33 1 2.7587 1.0464 2.1182 34 1 1.0870 0.6165 2.5525 35 1 1.5985 -2.3676 3.0441 36 1 2.0100 -2.2267 4.7703 37 1 0.6497 -1.2946 4.1007 38 1 4.6688 -0.2626 3.0579 39 1 4.3574 -1.6239 4.1612 40 1 3.9454 -1.7650 2.4351 41 1 3.3377 1.2436 4.5407 42 1 1.6656 0.8148 4.9749 43 1 3.1078 2.0719 8.1216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229679427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = 6.421598 kcal Electronic energy + Delta-G solvation = -20351.669927 eV Core-core repulsion = 17522.459961 eV Total energy + Delta-G solvation = -2829.209966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.47913 -37.38007 -35.61423 -32.52902 -31.19323 -29.30374 -26.84260 -26.28865 -26.28069 -25.03120 -23.07973 -22.31410 -20.72293 -19.09416 -17.86069 -16.97948 -16.20191 -15.50980 -15.12309 -14.79995 -14.43474 -14.23782 -13.50937 -13.18191 -13.11266 -12.78585 -12.71705 -12.48073 -12.33100 -12.02414 -11.93357 -11.63712 -11.48350 -11.32964 -10.98133 -10.93774 -10.80533 -10.74907 -10.58813 -10.44768 -10.21339 -10.09912 -9.63924 -8.97623 -8.81060 -8.44573 -8.32046 -8.28747 -7.96608 -5.93493 -3.93513 1.17953 1.77649 2.13149 2.98263 3.36128 3.40724 3.42935 4.41691 4.53400 4.75375 5.04395 5.17994 5.28517 5.31270 5.42203 5.46645 5.62538 5.69550 5.76011 5.78851 5.81538 5.85161 5.99443 6.04162 6.14599 6.33111 6.34167 6.39468 6.51413 6.56543 6.69792 6.71973 6.84185 6.87699 7.25679 7.29065 7.31321 7.46946 7.72402 7.77392 7.90036 8.07034 8.51621 9.11766 9.69060 11.18190 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.004126 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.458346 B = 6783.864747 C = 7431.789894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.036 4.036 5 C -0.147 4.147 6 C -0.119 4.119 7 C -0.127 4.127 8 C -0.222 4.222 9 S 0.062 5.938 10 N -0.675 5.675 11 C 0.073 3.927 12 C -0.057 4.057 13 C -0.128 4.128 14 C -0.112 4.112 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.157 0.843 32 H 0.337 0.663 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.014 0.986 42 H 0.011 0.989 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -4.710 -19.503 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.094 0.906 4 C -0.077 4.077 5 C -0.264 4.264 6 C -0.148 4.148 7 C -0.158 4.158 8 C -0.357 4.357 9 S 0.324 5.676 10 N -0.306 5.306 11 C -0.056 4.056 12 C -0.057 4.057 13 C -0.185 4.185 14 C -0.170 4.170 15 C -0.003 4.003 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.559 -3.184 -20.341 20.596 hybrid contribution -0.099 -1.387 2.062 2.487 sum -0.659 -4.571 -18.279 18.853 Atomic orbital electron populations 1.22509 0.97298 1.02049 1.02240 1.21544 0.91983 0.98170 0.90867 0.90575 1.20189 0.88196 1.01861 0.97406 1.24215 0.99137 0.98234 1.04788 1.20018 0.91716 1.01731 1.01370 1.20212 0.97349 0.97616 1.00585 1.25434 1.00685 1.01055 1.08494 1.84117 0.98403 1.28721 1.56357 1.60639 1.56483 1.09828 1.03650 1.22090 0.98552 0.94908 0.90012 1.20608 0.94888 0.96037 0.94201 1.21758 0.98664 0.97882 1.00199 1.21563 0.95853 0.99801 0.99755 1.19110 0.96738 0.93692 0.90787 1.21200 1.42852 0.96252 0.94139 0.92394 1.25011 0.95891 0.94825 0.98832 1.69960 1.49244 1.08961 1.25641 0.86739 0.79450 0.79623 0.82668 1.20328 1.21453 1.20375 0.92235 0.92426 0.92468 0.91163 0.90144 0.84302 0.84729 0.82535 0.84390 0.91842 0.96032 0.94827 0.91858 0.94227 0.94364 0.92972 0.93844 0.96784 0.97044 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 2 C 0.09 1.00 2.58 -67.72 -0.17 0.83 16 3 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 4 C -0.04 -0.38 5.39 -27.88 -0.15 -0.53 16 5 C -0.15 -1.76 5.53 -36.00 -0.20 -1.96 16 6 C -0.12 -1.48 9.89 -41.21 -0.41 -1.89 16 7 C -0.13 -1.52 10.18 -41.21 -0.42 -1.94 16 8 C -0.22 -2.55 11.23 29.04 0.33 -2.22 16 9 S 0.06 0.72 23.33 -107.50 -2.51 -1.79 16 10 N -0.67 -9.23 5.04 -106.72 -0.54 -9.77 16 11 C 0.07 1.25 4.45 -3.82 -0.02 1.23 16 12 C -0.06 -1.13 0.60 -154.50 -0.09 -1.22 16 13 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 14 C -0.11 -2.19 8.06 37.16 0.30 -1.89 16 15 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 16 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 17 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.34 4.41 6.51 -39.29 -0.26 4.15 16 33 H 0.06 1.17 8.06 -51.93 -0.42 0.76 16 34 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 35 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 36 H 0.06 1.27 6.62 -51.92 -0.34 0.93 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 40 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -29.28 352.57 -10.05 -39.33 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.36 Total: 1.66 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -0.68 Total: -25.13 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.20 Total: -36.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.28 -10.05 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229679427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.751 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds