Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 C 1.38428 * 122.53852 * 89.99513 * 5 4 2 7 7 C 1.33388 * 114.92018 * 179.97438 * 6 5 4 8 8 S 1.75885 * 109.59337 * 0.02562 * 7 6 5 9 9 C 1.33385 * 122.53882 * 269.70800 * 5 4 2 10 10 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 11 11 C 1.46911 * 110.99614 * 85.00357 * 10 2 1 12 12 C 1.52993 * 109.46779 * 179.97438 * 11 10 2 13 13 C 1.53003 * 109.47616 * 299.99971 * 12 11 10 14 14 C 1.53000 * 109.47605 * 59.99999 * 12 11 10 15 15 C 1.53006 * 109.47136 * 179.97438 * 12 11 10 16 16 C 1.50691 * 109.47299 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00673 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00031 * 180.02562 * 16 15 12 19 19 N 1.31508 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00291 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47127 * 89.99634 * 20 18 16 22 22 H 1.48493 * 109.47200 * 209.99668 * 20 18 16 23 23 H 1.48499 * 109.46780 * 330.00082 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 28 28 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 29 29 H 1.07994 * 122.53998 * 359.95999 * 6 5 4 30 30 H 1.07992 * 125.20626 * 179.97438 * 7 6 5 31 31 H 1.07998 * 125.20316 * 0.02579 * 9 5 4 32 32 H 1.00897 * 111.00496 * 208.95166 * 10 2 1 33 33 H 1.09000 * 109.46786 * 299.99838 * 11 10 2 34 34 H 1.09000 * 109.46923 * 59.99884 * 11 10 2 35 35 H 1.08995 * 109.47025 * 60.00030 * 13 12 11 36 36 H 1.08995 * 109.47259 * 180.02562 * 13 12 11 37 37 H 1.09000 * 109.46596 * 300.00171 * 13 12 11 38 38 H 1.09000 * 109.47147 * 59.99395 * 14 12 11 39 39 H 1.08995 * 109.47831 * 179.97438 * 14 12 11 40 40 H 1.09008 * 109.47199 * 299.99990 * 14 12 11 41 41 H 1.09000 * 109.46821 * 300.00118 * 15 12 11 42 42 H 1.09000 * 109.46532 * 59.99946 * 15 12 11 43 43 H 0.97005 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.1881 0.4274 1.9547 7 6 5.5203 0.3704 1.9183 8 16 6.0253 -1.0632 1.0333 9 6 4.3493 -1.5211 0.7594 10 7 2.0196 -0.6926 -1.1994 11 6 2.0825 0.2226 -2.3469 12 6 2.5962 -0.5330 -3.5741 13 6 3.9935 -1.0852 -3.2851 14 6 1.6473 -1.6894 -3.8954 15 6 2.6611 0.4199 -4.7694 16 6 3.1665 -0.3243 -5.9783 17 1 3.4161 -1.3723 -5.9020 18 6 3.3103 0.3326 -7.1820 19 7 3.0059 1.6086 -7.2752 20 14 3.9375 -0.5898 -8.6805 21 1 2.7889 -1.1729 -9.4194 22 1 4.6720 0.3478 -9.5673 23 1 4.8501 -1.6777 -8.2458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6055 -0.2618 2.1370 28 1 1.7516 -1.7716 1.2057 29 1 3.6541 1.2264 2.4474 30 1 6.1868 1.0942 2.3634 31 1 4.0238 -2.4002 0.2232 32 1 2.9173 -1.1206 -1.0288 33 1 1.0871 0.6162 -2.5525 34 1 2.7589 1.0461 -2.1182 35 1 3.9469 -1.7642 -2.4337 36 1 4.3597 -1.6231 -4.1596 37 1 4.6696 -0.2614 -3.0563 38 1 0.6518 -1.2960 -4.1013 39 1 2.0130 -2.2274 -4.7699 40 1 1.6006 -2.3684 -3.0439 41 1 1.6654 0.8129 -4.9752 42 1 3.3369 1.2440 -4.5408 43 1 3.1075 2.0709 -8.1219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = 6.336494 kcal Electronic energy + Delta-G solvation = -20403.395659 eV Core-core repulsion = 17574.182002 eV Total energy + Delta-G solvation = -2829.213657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.10173 -37.38459 -35.23382 -32.43406 -30.62315 -29.70984 -27.01507 -26.83727 -26.28465 -25.11278 -23.18499 -22.27743 -20.45253 -18.85174 -17.81155 -17.56656 -16.20206 -15.87619 -15.42370 -14.77698 -14.42648 -13.88986 -13.52535 -13.19608 -13.10360 -12.95458 -12.75285 -12.55312 -12.33574 -11.96337 -11.92825 -11.74058 -11.59268 -11.31859 -11.06958 -10.89220 -10.75399 -10.70475 -10.61423 -10.45454 -10.18486 -10.06618 -9.63016 -8.97820 -8.89733 -8.77356 -8.42507 -8.28501 -7.99402 -5.93037 -3.92925 0.92588 1.59982 1.92552 2.59705 3.35356 3.41776 3.44618 4.45490 4.55150 4.77362 4.89203 5.03218 5.22109 5.30405 5.42773 5.45490 5.58620 5.61271 5.75822 5.81256 5.87884 5.89289 5.97405 6.03350 6.08817 6.31706 6.35602 6.37229 6.39330 6.43822 6.58594 6.70870 6.84701 6.87108 7.25602 7.29700 7.31113 7.50298 7.73867 7.80818 7.90968 8.07545 8.52318 9.12459 9.69648 11.18683 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.004275 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.629307 B = 6548.104190 C = 7379.000284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.063 4.063 5 C -0.104 4.104 6 C -0.131 4.131 7 C -0.214 4.214 8 S 0.095 5.905 9 C -0.209 4.209 10 N -0.684 5.684 11 C 0.071 3.929 12 C -0.058 4.058 13 C -0.127 4.127 14 C -0.115 4.115 15 C 0.034 3.966 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.339 0.661 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -4.121 20.230 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.059 0.941 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.161 4.161 7 C -0.350 4.350 8 S 0.359 5.641 9 C -0.345 4.345 10 N -0.318 5.318 11 C -0.058 4.058 12 C -0.058 4.058 13 C -0.184 4.184 14 C -0.172 4.172 15 C -0.003 4.003 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.773 -4.854 19.552 20.224 hybrid contribution -0.141 0.918 -0.392 1.008 sum 1.632 -3.936 19.160 19.628 Atomic orbital electron populations 1.21772 0.94526 1.02193 1.01059 1.21462 0.95619 0.95923 0.89462 0.94131 1.20579 0.89192 1.02282 0.98289 1.18993 0.97221 0.95112 1.00288 1.20088 0.93536 0.99995 1.02512 1.25597 0.99060 1.02947 1.07361 1.84346 1.07599 1.19675 1.52491 1.25574 0.95289 1.05313 1.08307 1.60733 1.33758 1.33530 1.03805 1.22122 0.99969 0.93213 0.90476 1.20619 0.94077 0.96663 0.94479 1.21749 0.97017 0.99574 1.00056 1.21591 0.98239 0.97511 0.99900 1.19117 0.96902 0.93569 0.90762 1.21240 1.42732 0.96273 0.94139 0.92323 1.25011 0.95916 0.94815 0.98831 1.69968 1.49342 1.08977 1.25503 0.86676 0.78942 0.79662 0.83214 1.20787 1.21414 1.19950 0.92426 0.93141 0.92076 0.90505 0.90156 0.84457 0.82055 0.81601 0.83924 0.91663 0.96147 0.95137 0.91760 0.94167 0.94190 0.92779 0.93962 0.96724 0.96986 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.41 37.16 0.35 -1.23 16 2 C 0.09 1.07 2.64 -67.71 -0.18 0.89 16 3 H 0.04 0.55 7.80 -51.93 -0.40 0.15 16 4 C -0.06 -0.65 5.09 -27.88 -0.14 -0.80 16 5 C -0.10 -1.15 4.74 -106.25 -0.50 -1.66 16 6 C -0.13 -1.38 9.98 -41.21 -0.41 -1.79 16 7 C -0.21 -2.18 11.23 29.04 0.33 -1.85 16 8 S 0.09 1.02 23.34 -107.50 -2.51 -1.49 16 9 C -0.21 -2.37 9.33 29.04 0.27 -2.10 16 10 N -0.68 -10.18 5.52 -106.72 -0.59 -10.77 16 11 C 0.07 1.28 4.45 -3.82 -0.02 1.26 16 12 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 13 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 14 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 15 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -14.01 7.65 -34.44 -0.26 -14.27 16 17 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.17 1.76 7.71 -52.49 -0.40 1.36 16 32 H 0.34 4.94 3.78 -39.29 -0.15 4.79 16 33 H 0.06 1.21 7.44 -51.93 -0.39 0.82 16 34 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 35 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 36 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.13 6.61 -51.93 -0.34 0.79 16 40 H 0.04 0.75 7.60 -51.92 -0.39 0.35 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -29.69 348.42 -9.64 -39.34 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.23 Total: 2.01 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -0.28 Total: -24.71 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.15 Total: -37.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.69 -9.64 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.673 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds