Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 C 1.38428 * 122.53852 * 89.99513 * 5 4 2 7 7 C 1.33388 * 114.92018 * 179.97438 * 6 5 4 8 8 S 1.75885 * 109.59337 * 0.02562 * 7 6 5 9 9 C 1.33385 * 122.53882 * 269.70800 * 5 4 2 10 10 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 11 11 C 1.46911 * 110.99614 * 85.00357 * 10 2 1 12 12 C 1.52993 * 109.46779 * 179.97438 * 11 10 2 13 13 C 1.53003 * 109.47616 * 299.99971 * 12 11 10 14 14 C 1.53000 * 109.47605 * 59.99999 * 12 11 10 15 15 C 1.53006 * 109.47136 * 179.97438 * 12 11 10 16 16 C 1.50691 * 109.47299 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00673 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00031 * 180.02562 * 16 15 12 19 19 N 1.31508 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00291 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47127 * 89.99634 * 20 18 16 22 22 H 1.48493 * 109.47200 * 209.99668 * 20 18 16 23 23 H 1.48499 * 109.46780 * 330.00082 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 28 28 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 29 29 H 1.07994 * 122.53998 * 359.95999 * 6 5 4 30 30 H 1.07992 * 125.20626 * 179.97438 * 7 6 5 31 31 H 1.07998 * 125.20316 * 0.02579 * 9 5 4 32 32 H 1.00897 * 111.00496 * 208.95166 * 10 2 1 33 33 H 1.09000 * 109.46786 * 299.99838 * 11 10 2 34 34 H 1.09000 * 109.46923 * 59.99884 * 11 10 2 35 35 H 1.08995 * 109.47025 * 60.00030 * 13 12 11 36 36 H 1.08995 * 109.47259 * 180.02562 * 13 12 11 37 37 H 1.09000 * 109.46596 * 300.00171 * 13 12 11 38 38 H 1.09000 * 109.47147 * 59.99395 * 14 12 11 39 39 H 1.08995 * 109.47831 * 179.97438 * 14 12 11 40 40 H 1.09008 * 109.47199 * 299.99990 * 14 12 11 41 41 H 1.09000 * 109.46821 * 300.00118 * 15 12 11 42 42 H 1.09000 * 109.46532 * 59.99946 * 15 12 11 43 43 H 0.97005 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.1881 0.4274 1.9547 7 6 5.5203 0.3704 1.9183 8 16 6.0253 -1.0632 1.0333 9 6 4.3493 -1.5211 0.7594 10 7 2.0196 -0.6926 -1.1994 11 6 2.0825 0.2226 -2.3469 12 6 2.5962 -0.5330 -3.5741 13 6 3.9935 -1.0852 -3.2851 14 6 1.6473 -1.6894 -3.8954 15 6 2.6611 0.4199 -4.7694 16 6 3.1665 -0.3243 -5.9783 17 1 3.4161 -1.3723 -5.9020 18 6 3.3103 0.3326 -7.1820 19 7 3.0059 1.6086 -7.2752 20 14 3.9375 -0.5898 -8.6805 21 1 2.7889 -1.1729 -9.4194 22 1 4.6720 0.3478 -9.5673 23 1 4.8501 -1.6777 -8.2458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6055 -0.2618 2.1370 28 1 1.7516 -1.7716 1.2057 29 1 3.6541 1.2264 2.4474 30 1 6.1868 1.0942 2.3634 31 1 4.0238 -2.4002 0.2232 32 1 2.9173 -1.1206 -1.0288 33 1 1.0871 0.6162 -2.5525 34 1 2.7589 1.0461 -2.1182 35 1 3.9469 -1.7642 -2.4337 36 1 4.3597 -1.6231 -4.1596 37 1 4.6696 -0.2614 -3.0563 38 1 0.6518 -1.2960 -4.1013 39 1 2.0130 -2.2274 -4.7699 40 1 1.6006 -2.3684 -3.0439 41 1 1.6654 0.8129 -4.9752 42 1 3.3369 1.2440 -4.5408 43 1 3.1075 2.0709 -8.1219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = -9.252444 kcal Electronic energy + Delta-G solvation = -20404.071646 eV Core-core repulsion = 17574.182002 eV Total energy + Delta-G solvation = -2829.889644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10703 -38.76009 -36.50562 -34.47647 -31.82520 -30.68430 -28.83902 -27.93354 -27.83173 -26.68084 -24.57266 -23.64952 -21.48692 -19.74670 -19.41560 -18.40978 -18.31851 -17.00317 -16.53146 -16.42582 -15.80036 -15.44444 -14.88551 -14.51608 -14.33093 -14.00406 -13.90069 -13.84697 -13.60183 -13.48999 -13.25679 -12.85404 -12.81177 -12.60319 -12.58065 -12.46535 -12.26950 -12.19065 -12.12512 -11.87895 -11.78686 -11.49316 -11.35411 -10.86143 -10.72034 -10.50575 -9.70840 -9.26906 -9.24011 -8.13780 -6.20989 0.11719 0.80080 1.12348 1.40823 1.41468 1.52047 1.78725 2.43841 3.20069 3.32568 3.96353 4.04535 4.08553 4.20681 4.21654 4.36331 4.43027 4.50957 4.59173 4.72192 4.75004 4.80321 4.81635 4.94263 5.00683 5.02418 5.07133 5.15784 5.16397 5.19898 5.23826 5.46759 5.50777 5.52940 5.54353 5.58021 5.59130 5.66670 5.86913 5.92332 6.18308 6.37719 6.60251 6.93864 7.46348 8.98712 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.004275 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.629307 B = 6548.104190 C = 7379.000284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.030 0.970 4 C -0.055 4.055 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.216 4.216 8 S 0.082 5.918 9 C -0.224 4.224 10 N -0.678 5.678 11 C 0.085 3.915 12 C -0.055 4.055 13 C -0.118 4.118 14 C -0.105 4.105 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.342 0.658 33 H 0.056 0.944 34 H 0.006 0.994 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.068 0.932 41 H -0.016 1.016 42 H -0.020 1.020 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -5.517 21.573 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.048 0.952 4 C -0.095 4.095 5 C -0.123 4.123 6 C -0.173 4.173 7 C -0.351 4.351 8 S 0.346 5.654 9 C -0.359 4.359 10 N -0.313 5.313 11 C -0.045 4.045 12 C -0.055 4.055 13 C -0.175 4.175 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.172 0.828 30 H 0.199 0.801 31 H 0.189 0.811 32 H 0.164 0.836 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.002 0.998 42 H -0.001 1.001 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.845 -6.268 20.915 21.912 hybrid contribution -0.174 1.402 -0.750 1.599 sum 1.672 -4.866 20.165 20.811 Atomic orbital electron populations 1.21751 0.93606 1.02491 1.01360 1.21552 0.96274 0.95433 0.89303 0.95199 1.20539 0.88716 1.02503 0.97758 1.19182 0.97675 0.95216 1.00223 1.20347 0.93840 1.00389 1.02704 1.25909 0.99447 1.02850 1.06896 1.84379 1.07773 1.20373 1.52893 1.25736 0.95496 1.05823 1.08838 1.60707 1.33888 1.32790 1.03931 1.21809 0.98865 0.92966 0.90847 1.20490 0.95540 0.96042 0.93449 1.21642 0.95656 0.99612 1.00619 1.21490 0.97276 0.97212 1.00298 1.18995 0.94081 0.93653 0.92941 1.21606 1.42054 0.96687 0.94828 0.91571 1.25921 0.96243 0.95636 1.02245 1.70113 1.50751 1.10742 1.26363 0.85574 0.78593 0.78501 0.79177 1.20036 1.21241 1.18647 0.94294 0.90737 0.91730 0.88326 0.89561 0.82836 0.80118 0.81114 0.83586 0.92527 0.97537 0.91949 0.93264 0.95002 0.94999 0.94202 0.91349 0.99775 1.00121 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.41 71.98 0.68 -2.13 16 2 C 0.08 1.95 2.64 44.92 0.12 2.06 16 3 H 0.03 0.77 7.80 -2.39 -0.02 0.75 16 4 C -0.06 -0.99 5.09 29.85 0.15 -0.84 16 5 C -0.11 -2.22 4.74 -20.92 -0.10 -2.32 16 6 C -0.14 -2.70 9.98 21.22 0.21 -2.49 16 7 C -0.22 -4.00 11.23 66.72 0.75 -3.25 16 8 S 0.08 1.66 23.34 -56.49 -1.32 0.34 16 9 C -0.22 -4.67 9.33 66.72 0.62 -4.05 16 10 N -0.68 -19.15 5.52 -491.55 -2.71 -21.86 16 11 C 0.08 3.05 4.45 86.30 0.38 3.44 16 12 C -0.05 -2.25 0.60 -52.18 -0.03 -2.28 16 13 C -0.12 -4.46 7.89 71.98 0.57 -3.90 16 14 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 15 C 0.04 2.18 4.04 29.85 0.12 2.30 16 16 C -0.51 -28.89 7.65 25.60 0.20 -28.70 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 20 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.04 0.95 7.45 -2.39 -0.02 0.94 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.17 3.29 7.71 -2.91 -0.02 3.26 16 32 H 0.34 9.29 3.78 -89.70 -0.34 8.95 16 33 H 0.06 2.13 7.44 -2.39 -0.02 2.11 16 34 H 0.01 0.25 8.06 -2.39 -0.02 0.23 16 35 H 0.06 1.94 6.57 -2.39 -0.02 1.93 16 36 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.63 6.61 -2.39 -0.02 1.62 16 40 H 0.07 2.28 7.60 -2.38 -0.02 2.26 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 43 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -64.54 348.42 3.62 -60.92 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.63 Total: 16.95 kcal Atomic # 6 Polarization: -50.13 SS G_CDS: 4.71 Total: -45.42 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.43 Total: -79.72 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Total: -64.54 3.62 -60.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.668 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds