Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 C 1.38430 * 122.54109 * 90.00333 * 5 4 2 7 7 C 1.33390 * 114.92085 * 179.97438 * 6 5 4 8 8 S 1.75886 * 109.59411 * 0.02562 * 7 6 5 9 9 C 1.33398 * 122.53898 * 269.70995 * 5 4 2 10 10 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 11 11 C 1.46899 * 111.00029 * 275.00154 * 10 2 1 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 2 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 28 28 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 29 29 H 1.07994 * 122.53648 * 359.97438 * 6 5 4 30 30 H 1.07994 * 125.20365 * 179.97438 * 7 6 5 31 31 H 1.07999 * 125.20242 * 0.02882 * 9 5 4 32 32 H 1.00908 * 110.99583 * 38.95067 * 10 2 1 33 33 H 1.09002 * 109.47043 * 299.99792 * 11 10 2 34 34 H 1.09001 * 109.47354 * 59.99854 * 11 10 2 35 35 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 36 36 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 38 38 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 39 39 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 41 41 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 42 42 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 43 43 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 6 4.3798 -1.5523 -0.7334 7 6 5.6829 -1.3093 -0.8821 8 16 5.9052 0.1760 -1.7975 9 6 4.1645 0.3865 -1.9362 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5950 -0.5331 3.5745 13 6 1.6451 -1.6889 3.8953 14 6 3.9921 -1.0863 3.2863 15 6 2.6610 0.4201 4.7694 16 6 3.1653 -0.3244 5.9787 17 1 3.4143 -1.3726 5.9025 18 6 3.3099 0.3327 7.1821 19 7 3.7495 -0.3171 8.2376 20 14 2.8799 2.1458 7.3138 21 1 1.4507 2.2896 7.6905 22 1 3.7315 2.7825 8.3505 23 1 3.1159 2.8068 6.0051 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2618 -2.1369 29 1 4.0067 -2.4149 -0.2014 30 1 6.4796 -1.9292 -0.4982 31 1 3.6747 1.2030 -2.4459 32 1 1.4494 -1.4979 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0870 0.6163 2.5526 35 1 1.5986 -2.3679 3.0439 36 1 2.0106 -2.2276 4.7696 37 1 0.6498 -1.2949 4.1007 38 1 4.6688 -0.2629 3.0577 39 1 4.3571 -1.6251 4.1607 40 1 3.9455 -1.7652 2.4348 41 1 3.3380 1.2432 4.5406 42 1 1.6659 0.8145 4.9750 43 1 3.8516 0.1453 9.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = 10.429206 kcal Electronic energy + Delta-G solvation = -20451.235303 eV Core-core repulsion = 17622.199120 eV Total energy + Delta-G solvation = -2829.036183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.86557 -37.50944 -35.38911 -32.40171 -30.83781 -29.33996 -27.48462 -27.04388 -26.33128 -24.98835 -23.06340 -21.99666 -20.69467 -18.65979 -17.88087 -17.42163 -16.75412 -15.52661 -15.21905 -14.62903 -14.35245 -14.09797 -13.53636 -13.28987 -13.16652 -12.85673 -12.70617 -12.69372 -12.36873 -12.24024 -12.05268 -11.78093 -11.52182 -11.39474 -11.08283 -10.99787 -10.84118 -10.81122 -10.57610 -10.45975 -10.29084 -9.78719 -9.64224 -9.24716 -8.87605 -8.66514 -8.47644 -8.23593 -8.01615 -5.98078 -3.93844 1.15129 1.79697 2.11287 2.90707 3.33113 3.41008 3.45055 4.39784 4.50148 4.81630 5.05264 5.06435 5.26007 5.29117 5.35313 5.44756 5.56613 5.64124 5.69544 5.72158 5.76869 5.81765 5.90233 5.98762 6.09337 6.23053 6.23872 6.31270 6.46693 6.56224 6.63048 6.66644 6.74021 6.84659 7.12268 7.18465 7.23260 7.36613 7.38386 7.51101 7.71757 7.88185 8.62199 9.08078 9.65412 11.15094 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.004389 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.476563 B = 6377.595268 C = 6990.210788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.074 0.926 4 C -0.049 4.049 5 C -0.071 4.071 6 C -0.100 4.100 7 C -0.214 4.214 8 S 0.063 5.937 9 C -0.225 4.225 10 N -0.674 5.674 11 C 0.071 3.929 12 C -0.047 4.047 13 C -0.129 4.129 14 C -0.114 4.114 15 C -0.004 4.004 16 C -0.505 4.505 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.875 3.125 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.267 1.267 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.338 0.662 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.006 0.994 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -0.655 -21.893 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.093 0.907 4 C -0.090 4.090 5 C -0.084 4.084 6 C -0.130 4.130 7 C -0.349 4.349 8 S 0.326 5.674 9 C -0.360 4.360 10 N -0.306 5.306 11 C -0.058 4.058 12 C -0.048 4.048 13 C -0.187 4.187 14 C -0.171 4.171 15 C -0.042 4.042 16 C -0.543 4.543 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.702 3.298 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.158 0.842 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.157 0.843 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.025 0.975 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.501 0.270 -22.369 22.377 hybrid contribution -2.360 0.486 1.106 2.651 sum -2.860 0.756 -21.264 21.469 Atomic orbital electron populations 1.22515 0.97508 1.02041 1.02062 1.21535 0.91834 0.98107 0.90902 0.90726 1.20368 0.90083 1.01419 0.97113 1.18763 0.96751 0.94685 0.98179 1.20030 0.91724 1.00967 1.00281 1.25516 1.00558 1.01169 1.07632 1.84141 1.05930 1.22868 1.54481 1.25316 0.95984 1.04654 1.10091 1.60627 1.56634 1.09758 1.03551 1.22110 0.98422 0.95013 0.90283 1.20397 0.95492 0.95698 0.93201 1.21772 0.98389 0.97822 1.00691 1.21576 0.95399 0.99911 1.00247 1.19624 0.95918 0.94978 0.93700 1.21141 1.42734 0.98226 0.92234 0.90447 1.25009 0.94981 0.97670 0.95905 1.69909 1.47416 1.36405 1.00864 0.86862 0.78384 0.86573 0.77932 1.20542 1.21563 1.19156 0.92460 0.92478 0.92456 0.90950 0.91310 0.84170 0.82290 0.82662 0.84255 0.91891 0.96112 0.94589 0.91301 0.94270 0.94410 0.92401 0.93630 0.96815 0.97524 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.16 37.15 0.34 -1.41 16 2 C 0.09 0.95 2.58 -67.72 -0.17 0.78 16 3 H 0.07 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.05 -0.48 5.15 -27.88 -0.14 -0.62 16 5 C -0.07 -0.81 4.84 -106.24 -0.51 -1.32 16 6 C -0.10 -1.19 9.73 -41.21 -0.40 -1.60 16 7 C -0.21 -2.50 11.23 29.04 0.33 -2.17 16 8 S 0.06 0.70 23.34 -107.50 -2.51 -1.81 16 9 C -0.23 -2.49 10.98 29.04 0.32 -2.18 16 10 N -0.67 -8.75 4.96 -106.73 -0.53 -9.28 16 11 C 0.07 1.13 4.45 -3.83 -0.02 1.12 16 12 C -0.05 -0.91 0.60 -154.51 -0.09 -1.00 16 13 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 14 C -0.11 -2.18 8.06 37.16 0.30 -1.88 16 15 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 16 C -0.51 -14.00 8.20 -34.44 -0.28 -14.29 16 17 H 0.08 2.29 5.92 -52.48 -0.31 1.98 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -27.91 13.96 55.43 0.77 -27.14 16 20 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 25 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.34 4.23 6.51 -39.29 -0.26 3.98 16 33 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 34 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16 35 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 40 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 41 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 42 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -29.60 348.57 -9.24 -38.84 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.32 Total: 1.86 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -0.23 Total: -25.03 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.24 Total: -36.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.60 -9.24 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.265 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds