Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 C 1.38430 * 122.54109 * 90.00333 * 5 4 2 7 7 C 1.33390 * 114.92085 * 179.97438 * 6 5 4 8 8 S 1.75886 * 109.59411 * 0.02562 * 7 6 5 9 9 C 1.33398 * 122.53898 * 269.70995 * 5 4 2 10 10 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 11 11 C 1.46899 * 111.00029 * 275.00154 * 10 2 1 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 2 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 28 28 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 29 29 H 1.07994 * 122.53648 * 359.97438 * 6 5 4 30 30 H 1.07994 * 125.20365 * 179.97438 * 7 6 5 31 31 H 1.07999 * 125.20242 * 0.02882 * 9 5 4 32 32 H 1.00908 * 110.99583 * 38.95067 * 10 2 1 33 33 H 1.09002 * 109.47043 * 299.99792 * 11 10 2 34 34 H 1.09001 * 109.47354 * 59.99854 * 11 10 2 35 35 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 36 36 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 38 38 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 39 39 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 41 41 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 42 42 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 43 43 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 6 4.3798 -1.5523 -0.7334 7 6 5.6829 -1.3093 -0.8821 8 16 5.9052 0.1760 -1.7975 9 6 4.1645 0.3865 -1.9362 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5950 -0.5331 3.5745 13 6 1.6451 -1.6889 3.8953 14 6 3.9921 -1.0863 3.2863 15 6 2.6610 0.4201 4.7694 16 6 3.1653 -0.3244 5.9787 17 1 3.4143 -1.3726 5.9025 18 6 3.3099 0.3327 7.1821 19 7 3.7495 -0.3171 8.2376 20 14 2.8799 2.1458 7.3138 21 1 1.4507 2.2896 7.6905 22 1 3.7315 2.7825 8.3505 23 1 3.1159 2.8068 6.0051 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2618 -2.1369 29 1 4.0067 -2.4149 -0.2014 30 1 6.4796 -1.9292 -0.4982 31 1 3.6747 1.2030 -2.4459 32 1 1.4494 -1.4979 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0870 0.6163 2.5526 35 1 1.5986 -2.3679 3.0439 36 1 2.0106 -2.2276 4.7696 37 1 0.6498 -1.2949 4.1007 38 1 4.6688 -0.2629 3.0577 39 1 4.3571 -1.6251 4.1607 40 1 3.9455 -1.7652 2.4348 41 1 3.3380 1.2432 4.5406 42 1 1.6659 0.8145 4.9750 43 1 3.8516 0.1453 9.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = -5.660447 kcal Electronic energy + Delta-G solvation = -20451.933003 eV Core-core repulsion = 17622.199120 eV Total energy + Delta-G solvation = -2829.733883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86966 -38.74954 -36.57555 -34.45368 -31.98941 -30.35533 -29.29052 -27.92208 -27.78234 -26.42499 -24.08545 -23.66590 -21.60027 -19.63107 -19.29148 -18.86195 -18.33745 -16.57049 -16.41489 -15.98319 -15.76085 -15.54659 -14.89456 -14.71135 -14.21850 -14.12925 -14.08110 -13.67833 -13.58607 -13.43954 -13.28865 -12.91238 -12.83634 -12.66005 -12.44079 -12.28898 -12.26402 -12.17900 -12.04806 -11.74580 -11.70874 -11.41899 -11.33342 -10.95012 -10.77558 -10.70064 -9.53983 -9.15397 -9.00776 -8.22017 -6.21816 0.29336 0.95019 1.26163 1.33707 1.36221 1.47062 2.04134 2.38732 3.13057 3.37173 4.00135 4.16362 4.19803 4.25408 4.31214 4.37743 4.47854 4.51182 4.71678 4.73836 4.77825 4.84975 4.92633 4.96559 4.98508 5.04871 5.08911 5.13584 5.21311 5.24078 5.31864 5.40189 5.40298 5.46086 5.56066 5.63987 5.73246 5.79057 5.81742 5.84544 6.27008 6.43518 6.69622 6.85449 7.40637 8.94229 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.004389 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.476563 B = 6377.595268 C = 6990.210788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.064 0.936 4 C -0.043 4.043 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.228 4.228 8 S 0.056 5.944 9 C -0.229 4.229 10 N -0.673 5.673 11 C 0.086 3.914 12 C -0.047 4.047 13 C -0.122 4.122 14 C -0.102 4.102 15 C -0.003 4.003 16 C -0.502 4.502 17 H 0.045 0.955 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.253 1.253 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.343 0.657 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.007 0.993 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 0.306 -24.249 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.083 4.083 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.363 4.363 8 S 0.319 5.681 9 C -0.364 4.364 10 N -0.306 5.306 11 C -0.043 4.043 12 C -0.047 4.047 13 C -0.179 4.179 14 C -0.159 4.159 15 C -0.041 4.041 16 C -0.540 4.540 17 H 0.063 0.937 18 C -0.194 4.194 19 N -0.596 5.596 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.177 1.177 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.160 0.840 30 H 0.185 0.815 31 H 0.191 0.809 32 H 0.164 0.836 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.028 0.972 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.045 1.228 -24.754 24.869 hybrid contribution -1.837 0.100 1.795 2.571 sum -3.882 1.329 -22.959 23.323 Atomic orbital electron populations 1.22443 0.96126 1.02702 1.02270 1.21544 0.92847 0.97440 0.90207 0.91788 1.20362 0.88897 1.01952 0.97101 1.18966 0.97698 0.94537 0.98134 1.20198 0.91980 1.01327 1.00557 1.25746 1.01030 1.01595 1.07939 1.84151 1.06696 1.22771 1.54443 1.25604 0.95685 1.05116 1.10020 1.60558 1.57441 1.09482 1.03074 1.21771 0.98055 0.94632 0.89845 1.20328 0.95884 0.95424 0.93061 1.21672 0.97960 0.97692 1.00581 1.21446 0.95237 0.99625 0.99618 1.19597 0.95333 0.95290 0.93889 1.21429 1.41513 0.97207 0.93827 0.93682 1.25893 0.95305 1.02502 0.95662 1.70061 1.49500 1.38459 1.01590 0.85831 0.78485 0.80908 0.78437 1.19449 1.21430 1.17661 0.91571 0.93718 0.90825 0.90179 0.89324 0.84029 0.81489 0.80909 0.83649 0.92877 0.95736 0.91238 0.94760 0.93801 0.95277 0.95689 0.91181 0.97433 0.97197 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.16 71.98 0.66 -2.10 16 2 C 0.09 1.68 2.58 44.91 0.12 1.79 16 3 H 0.06 1.37 7.80 -2.39 -0.02 1.35 16 4 C -0.04 -0.68 5.15 29.85 0.15 -0.53 16 5 C -0.08 -1.64 4.84 -20.91 -0.10 -1.74 16 6 C -0.11 -2.44 9.73 21.22 0.21 -2.24 16 7 C -0.23 -5.08 11.23 66.72 0.75 -4.33 16 8 S 0.06 1.19 23.34 -56.49 -1.32 -0.12 16 9 C -0.23 -4.56 10.98 66.72 0.73 -3.83 16 10 N -0.67 -15.60 4.96 -491.59 -2.44 -18.04 16 11 C 0.09 2.59 4.45 86.30 0.38 2.98 16 12 C -0.05 -1.73 0.60 -52.18 -0.03 -1.77 16 13 C -0.12 -4.28 7.89 71.98 0.57 -3.71 16 14 C -0.10 -3.88 8.06 71.98 0.58 -3.30 16 15 C 0.00 -0.15 3.11 29.84 0.09 -0.06 16 16 C -0.50 -28.46 8.20 25.60 0.21 -28.25 16 17 H 0.05 2.79 5.92 -2.91 -0.02 2.78 16 18 C 0.00 0.12 5.47 84.65 0.46 0.58 16 19 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 20 Si 0.94 45.33 27.47 68.60 1.88 47.22 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 24 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 25 H 0.04 0.82 7.45 -2.39 -0.02 0.80 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.18 8.13 -2.39 -0.02 1.17 16 28 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.34 7.42 6.51 -89.69 -0.58 6.84 16 33 H 0.05 1.72 8.06 -2.39 -0.02 1.70 16 34 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16 35 H 0.07 1.95 6.57 -2.39 -0.02 1.93 16 36 H 0.03 1.43 6.62 -2.39 -0.02 1.41 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.02 1.08 6.62 -2.39 -0.02 1.07 16 40 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 41 H 0.01 0.35 7.20 -2.39 -0.02 0.34 16 42 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 43 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -64.83 348.57 3.54 -61.29 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.33 Total: 16.30 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 4.78 Total: -46.49 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -2.14 Total: -78.19 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.32 Total: -0.12 kcal Total: -64.83 3.54 -61.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.628 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds