Wall clock time and date at job start Tue Mar 31 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33395 * 125.20766 * 2 1 4 4 C 1.38421 * 114.92147 * 180.20922 * 3 2 1 5 5 C 1.33388 * 114.92066 * 359.48238 * 4 3 2 6 6 C 1.50702 * 125.20547 * 180.29144 * 5 4 3 7 7 H 1.09004 * 109.46923 * 340.00923 * 6 5 4 8 8 C 1.53004 * 109.47055 * 100.00234 * 6 5 4 9 9 N 1.46900 * 109.47364 * 220.00803 * 6 5 4 10 10 C 1.46906 * 110.99744 * 155.00342 * 9 6 5 11 11 C 1.53001 * 109.46694 * 179.97438 * 10 9 6 12 12 C 1.52996 * 109.47220 * 299.99682 * 11 10 9 13 13 C 1.53005 * 109.47311 * 59.99602 * 11 10 9 14 14 C 1.53002 * 109.47088 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47177 * 180.02562 * 14 11 10 16 16 H 1.08002 * 120.00262 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00007 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46875 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46781 * 119.99941 * 19 17 15 22 22 H 1.48491 * 109.47235 * 239.99720 * 19 17 15 23 23 S 1.75885 * 109.59458 * 0.27968 * 5 4 3 24 24 H 1.09000 * 109.47395 * 180.28840 * 1 2 3 25 25 H 1.09000 * 109.47277 * 300.29363 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.28950 * 1 2 3 27 27 H 1.08001 * 122.53584 * 359.96649 * 3 2 1 28 28 H 1.08002 * 122.54201 * 179.76212 * 4 3 2 29 29 H 1.08995 * 109.47260 * 300.00729 * 8 6 5 30 30 H 1.09004 * 109.46692 * 60.00547 * 8 6 5 31 31 H 1.08993 * 109.47322 * 179.97438 * 8 6 5 32 32 H 1.00898 * 110.99768 * 278.94927 * 9 6 5 33 33 H 1.08996 * 109.46676 * 299.99236 * 10 9 6 34 34 H 1.08992 * 109.47447 * 59.99419 * 10 9 6 35 35 H 1.09003 * 109.47287 * 59.99989 * 12 11 10 36 36 H 1.09001 * 109.47404 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47020 * 300.00237 * 12 11 10 38 38 H 1.09004 * 109.47127 * 59.99776 * 13 11 10 39 39 H 1.08995 * 109.46881 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.46931 * 300.00358 * 13 11 10 41 41 H 1.09004 * 109.46977 * 299.99995 * 14 11 10 42 42 H 1.09005 * 109.46907 * 59.99913 * 14 11 10 43 43 H 0.97000 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0046 5 6 3.9750 -0.4478 0.0026 6 6 5.3860 -0.9773 0.0060 7 1 6.0656 -0.2026 -0.3494 8 6 5.7750 -1.3832 1.4290 9 7 5.4721 -2.1474 -0.8780 10 6 6.8426 -2.3334 -1.3730 11 6 6.8924 -3.5591 -2.2875 12 6 6.4612 -4.7992 -1.5022 13 6 5.9462 -3.3507 -3.4717 14 6 8.3197 -3.7525 -2.8038 15 6 8.3687 -4.9593 -3.7050 16 1 7.4717 -5.5314 -3.8907 17 6 9.5589 -5.3337 -4.2917 18 7 10.6513 -4.6374 -4.0651 19 14 9.6198 -6.8300 -5.4082 20 1 8.2666 -7.4346 -5.4999 21 1 10.0706 -6.4192 -6.7622 22 1 10.5705 -7.8253 -4.8508 23 16 2.5208 -1.4372 0.0079 24 1 -0.3634 -1.0276 0.0052 25 1 -0.3634 0.5184 0.8873 26 1 -0.3633 0.5094 -0.8927 27 1 1.8670 2.0895 -0.0005 28 1 4.3722 1.6348 -0.0089 29 1 5.7110 -0.5150 2.0848 30 1 5.0954 -2.1579 1.7844 31 1 6.7952 -1.7666 1.4314 32 1 5.1403 -2.9782 -0.4113 33 1 7.1499 -1.4497 -1.9322 34 1 7.5166 -2.4822 -0.5295 35 1 5.4443 -4.6612 -1.1348 36 1 6.4971 -5.6725 -2.1536 37 1 7.1353 -4.9477 -0.6586 38 1 6.2534 -2.4671 -4.0312 39 1 5.9821 -4.2237 -4.1234 40 1 4.9293 -3.2126 -3.1042 41 1 8.6265 -2.8688 -3.3634 42 1 8.9941 -3.9008 -1.9603 43 1 11.4886 -4.9005 -4.4781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:30 Heat of formation + Delta-G solvation = 5.129428 kcal Electronic energy + Delta-G solvation = -19873.682486 eV Core-core repulsion = 17044.416487 eV Total energy + Delta-G solvation = -2829.265999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.55969 -37.53318 -35.34889 -32.52289 -31.65073 -29.50190 -26.86686 -26.60400 -26.30531 -25.14624 -23.24192 -22.44422 -21.39246 -19.08037 -17.79673 -16.75335 -16.22950 -15.52509 -14.89341 -14.84788 -14.31143 -14.07255 -13.98615 -13.33742 -13.19457 -13.07058 -12.94279 -12.61853 -12.40559 -12.00864 -11.94333 -11.80931 -11.69619 -11.55579 -11.21692 -10.98666 -10.86501 -10.73875 -10.58203 -10.48058 -10.26016 -10.10366 -9.67927 -9.02422 -8.82341 -8.44444 -8.38934 -8.30998 -8.10162 -5.95417 -3.95276 1.02919 1.65687 2.08795 2.74376 3.33151 3.41059 3.44688 4.34663 4.51260 4.76691 4.81865 5.09016 5.10994 5.22221 5.32898 5.40584 5.42351 5.57559 5.62727 5.66123 5.73560 5.78060 5.84181 5.97106 6.03640 6.15575 6.25771 6.32656 6.34675 6.51708 6.52121 6.68694 6.80524 6.85109 7.21206 7.22231 7.28148 7.38057 7.62028 7.71797 7.86583 8.05122 8.49686 9.10359 9.67585 11.16328 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033027 B = 0.003358 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.583362 B = 8335.103638 C = 8676.819021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.199 4.199 3 C -0.138 4.138 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.148 3.852 7 H 0.093 0.907 8 C -0.178 4.178 9 N -0.679 5.679 10 C 0.071 3.929 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 S 0.122 5.878 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.339 0.661 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 9.752 11.111 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.316 4.316 3 C -0.169 4.169 4 C -0.179 4.179 5 C -0.263 4.263 6 C 0.036 3.964 7 H 0.111 0.889 8 C -0.237 4.237 9 N -0.311 5.311 10 C -0.057 4.057 11 C -0.058 4.058 12 C -0.186 4.186 13 C -0.173 4.173 14 C -0.003 4.003 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 S 0.386 5.614 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.162 8.531 10.507 21.857 hybrid contribution 1.041 0.474 0.107 1.149 sum -16.121 9.005 10.615 21.300 Atomic orbital electron populations 1.20269 0.88263 1.02631 1.02557 1.24503 0.99811 0.96436 1.10884 1.19937 0.92891 0.98965 1.05108 1.19966 0.96104 0.95789 1.06024 1.24534 0.98220 0.96221 1.07293 1.20006 0.89936 0.94800 0.91680 0.88854 1.22513 1.02045 1.01996 0.97142 1.60694 1.24808 1.05763 1.39810 1.22152 0.86520 0.99780 0.97293 1.20631 0.99296 0.91734 0.94186 1.21772 0.97894 0.99304 0.99664 1.21599 0.97499 1.00915 0.97327 1.19124 0.88612 0.96908 0.95706 1.21279 0.94416 1.11349 1.27330 0.92229 1.25017 0.95929 0.96806 0.96880 1.69977 0.99584 1.39608 1.44616 0.86612 0.77985 0.83196 0.80678 1.19761 1.21165 1.21209 1.84243 0.96025 1.08819 1.72310 0.91661 0.90978 0.90865 0.84944 0.84795 0.91963 0.92382 0.91679 0.84094 0.91419 0.95569 0.94884 0.91666 0.94100 0.94198 0.92705 0.93851 0.96682 0.96929 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.00 0.37 -0.24 16 2 C -0.20 -2.13 6.51 -36.00 -0.23 -2.37 16 3 C -0.14 -1.49 10.05 -41.21 -0.41 -1.90 16 4 C -0.15 -1.71 10.04 -41.21 -0.41 -2.13 16 5 C -0.14 -1.79 5.46 -36.00 -0.20 -1.99 16 6 C 0.15 1.86 3.02 -68.86 -0.21 1.65 16 7 H 0.09 1.18 7.78 -51.93 -0.40 0.78 16 8 C -0.18 -1.97 9.14 37.16 0.34 -1.63 16 9 N -0.68 -9.87 5.22 -107.95 -0.56 -10.43 16 10 C 0.07 1.21 4.45 -3.82 -0.02 1.19 16 11 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 12 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.84 7.65 -34.44 -0.26 -14.10 16 16 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 S 0.12 1.44 23.06 -107.50 -2.48 -1.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 32 H 0.34 4.82 6.51 -39.29 -0.26 4.56 16 33 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 34 H 0.03 0.44 7.43 -51.93 -0.39 0.06 16 35 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 36 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.15 6.61 -51.93 -0.34 0.81 16 40 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -29.44 353.18 -10.11 -39.54 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.36 Total: 0.78 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -0.74 Total: -24.66 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.17 Total: -36.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.44 -10.11 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.672 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds