Wall clock time and date at job start Tue Mar 31 2020 05:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33395 * 125.20766 * 2 1 4 4 C 1.38421 * 114.92147 * 180.20922 * 3 2 1 5 5 C 1.33388 * 114.92066 * 359.48238 * 4 3 2 6 6 C 1.50702 * 125.20547 * 180.29144 * 5 4 3 7 7 H 1.09004 * 109.46923 * 340.00923 * 6 5 4 8 8 C 1.53004 * 109.47055 * 100.00234 * 6 5 4 9 9 N 1.46900 * 109.47364 * 220.00803 * 6 5 4 10 10 C 1.46906 * 110.99744 * 155.00342 * 9 6 5 11 11 C 1.53001 * 109.46694 * 179.97438 * 10 9 6 12 12 C 1.52996 * 109.47220 * 299.99682 * 11 10 9 13 13 C 1.53005 * 109.47311 * 59.99602 * 11 10 9 14 14 C 1.53002 * 109.47088 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47177 * 180.02562 * 14 11 10 16 16 H 1.08002 * 120.00262 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00007 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46875 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46781 * 119.99941 * 19 17 15 22 22 H 1.48491 * 109.47235 * 239.99720 * 19 17 15 23 23 S 1.75885 * 109.59458 * 0.27968 * 5 4 3 24 24 H 1.09000 * 109.47395 * 180.28840 * 1 2 3 25 25 H 1.09000 * 109.47277 * 300.29363 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.28950 * 1 2 3 27 27 H 1.08001 * 122.53584 * 359.96649 * 3 2 1 28 28 H 1.08002 * 122.54201 * 179.76212 * 4 3 2 29 29 H 1.08995 * 109.47260 * 300.00729 * 8 6 5 30 30 H 1.09004 * 109.46692 * 60.00547 * 8 6 5 31 31 H 1.08993 * 109.47322 * 179.97438 * 8 6 5 32 32 H 1.00898 * 110.99768 * 278.94927 * 9 6 5 33 33 H 1.08996 * 109.46676 * 299.99236 * 10 9 6 34 34 H 1.08992 * 109.47447 * 59.99419 * 10 9 6 35 35 H 1.09003 * 109.47287 * 59.99989 * 12 11 10 36 36 H 1.09001 * 109.47404 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47020 * 300.00237 * 12 11 10 38 38 H 1.09004 * 109.47127 * 59.99776 * 13 11 10 39 39 H 1.08995 * 109.46881 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.46931 * 300.00358 * 13 11 10 41 41 H 1.09004 * 109.46977 * 299.99995 * 14 11 10 42 42 H 1.09005 * 109.46907 * 59.99913 * 14 11 10 43 43 H 0.97000 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0046 5 6 3.9750 -0.4478 0.0026 6 6 5.3860 -0.9773 0.0060 7 1 6.0656 -0.2026 -0.3494 8 6 5.7750 -1.3832 1.4290 9 7 5.4721 -2.1474 -0.8780 10 6 6.8426 -2.3334 -1.3730 11 6 6.8924 -3.5591 -2.2875 12 6 6.4612 -4.7992 -1.5022 13 6 5.9462 -3.3507 -3.4717 14 6 8.3197 -3.7525 -2.8038 15 6 8.3687 -4.9593 -3.7050 16 1 7.4717 -5.5314 -3.8907 17 6 9.5589 -5.3337 -4.2917 18 7 10.6513 -4.6374 -4.0651 19 14 9.6198 -6.8300 -5.4082 20 1 8.2666 -7.4346 -5.4999 21 1 10.0706 -6.4192 -6.7622 22 1 10.5705 -7.8253 -4.8508 23 16 2.5208 -1.4372 0.0079 24 1 -0.3634 -1.0276 0.0052 25 1 -0.3634 0.5184 0.8873 26 1 -0.3633 0.5094 -0.8927 27 1 1.8670 2.0895 -0.0005 28 1 4.3722 1.6348 -0.0089 29 1 5.7110 -0.5150 2.0848 30 1 5.0954 -2.1579 1.7844 31 1 6.7952 -1.7666 1.4314 32 1 5.1403 -2.9782 -0.4113 33 1 7.1499 -1.4497 -1.9322 34 1 7.5166 -2.4822 -0.5295 35 1 5.4443 -4.6612 -1.1348 36 1 6.4971 -5.6725 -2.1536 37 1 7.1353 -4.9477 -0.6586 38 1 6.2534 -2.4671 -4.0312 39 1 5.9821 -4.2237 -4.1234 40 1 4.9293 -3.2126 -3.1042 41 1 8.6265 -2.8688 -3.3634 42 1 8.9941 -3.9008 -1.9603 43 1 11.4886 -4.9005 -4.4781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:29 Heat of formation + Delta-G solvation = -9.947756 kcal Electronic energy + Delta-G solvation = -19874.336282 eV Core-core repulsion = 17044.416487 eV Total energy + Delta-G solvation = -2829.919795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.70556 -38.70067 -36.65232 -34.47354 -32.64652 -30.65563 -28.79984 -27.90254 -27.42209 -26.62381 -24.60499 -23.73981 -22.45174 -20.13086 -19.22923 -18.32703 -17.71508 -16.60035 -16.55735 -15.97382 -15.76905 -15.29197 -14.89701 -14.56771 -14.48832 -14.38804 -13.93494 -13.90431 -13.78715 -13.40413 -13.19629 -12.85761 -12.79910 -12.71245 -12.64218 -12.49545 -12.38444 -12.27190 -12.13247 -12.04815 -11.86284 -11.45002 -11.39063 -10.86745 -10.74671 -10.50709 -9.43075 -9.26136 -9.17344 -8.13873 -6.20470 0.17505 0.80579 1.22730 1.39882 1.41172 1.53195 1.90329 2.43865 3.20270 3.22181 3.82846 4.05081 4.10348 4.17205 4.27988 4.30576 4.39108 4.47790 4.65215 4.69467 4.76039 4.79398 4.81585 4.86712 4.91029 4.96710 5.07697 5.13319 5.16715 5.21304 5.22263 5.33558 5.47357 5.52207 5.54465 5.58386 5.64573 5.71270 5.87312 5.93206 6.05737 6.37421 6.44876 6.94817 7.46821 8.98666 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033027 B = 0.003358 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.583362 B = 8335.103638 C = 8676.819021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.196 4.196 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.164 4.164 6 C 0.150 3.850 7 H 0.090 0.910 8 C -0.171 4.171 9 N -0.677 5.677 10 C 0.085 3.915 11 C -0.055 4.055 12 C -0.122 4.122 13 C -0.106 4.106 14 C 0.041 3.959 15 C -0.513 4.513 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.955 3.045 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.282 1.282 23 S 0.100 5.900 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.343 0.657 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.064 0.936 41 H -0.016 1.016 42 H -0.014 1.014 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 9.843 11.601 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.314 4.314 3 C -0.180 4.180 4 C -0.180 4.180 5 C -0.282 4.282 6 C 0.038 3.962 7 H 0.108 0.892 8 C -0.230 4.230 9 N -0.309 5.309 10 C -0.044 4.044 11 C -0.055 4.055 12 C -0.179 4.179 13 C -0.163 4.163 14 C 0.004 3.996 15 C -0.551 4.551 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.781 3.219 20 H -0.185 1.185 21 H -0.209 1.209 22 H -0.208 1.208 23 S 0.364 5.636 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.002 0.998 42 H 0.004 0.996 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.335 8.624 11.007 23.861 hybrid contribution 1.659 0.531 -0.017 1.742 sum -17.675 9.154 10.990 22.738 Atomic orbital electron populations 1.20386 0.86282 1.03330 1.03831 1.24905 1.01134 0.95599 1.09726 1.20200 0.92569 1.00057 1.05160 1.20242 0.96981 0.95815 1.04974 1.24487 0.97979 0.96691 1.09037 1.19989 0.90448 0.93718 0.92012 0.89217 1.22436 1.01614 1.02565 0.96403 1.60604 1.22731 1.06654 1.40945 1.21832 0.88163 0.97820 0.96599 1.20493 0.95915 0.93972 0.95136 1.21677 0.99683 0.97569 0.98965 1.21492 0.98471 0.99631 0.96739 1.18994 0.91544 0.94960 0.94144 1.21650 0.94533 1.11765 1.27121 0.91672 1.25904 0.95678 0.99900 0.98601 1.70112 1.00232 1.41538 1.46041 0.85540 0.78447 0.79487 0.78464 1.18508 1.20902 1.20777 1.84250 0.96500 1.09982 1.72862 0.91300 0.89356 0.89788 0.82864 0.83682 0.90738 0.92089 0.92271 0.83700 0.92374 0.95674 0.91776 0.93438 0.94225 0.95206 0.94297 0.91713 0.99761 0.99580 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.38 71.23 0.74 -0.30 16 2 C -0.20 -3.77 6.51 24.59 0.16 -3.61 16 3 C -0.15 -2.87 10.05 21.22 0.21 -2.65 16 4 C -0.15 -3.18 10.04 21.22 0.21 -2.97 16 5 C -0.16 -3.82 5.46 24.59 0.13 -3.69 16 6 C 0.15 3.60 3.02 44.17 0.13 3.73 16 7 H 0.09 2.20 7.78 -2.38 -0.02 2.19 16 8 C -0.17 -3.56 9.14 71.98 0.66 -2.90 16 9 N -0.68 -18.89 5.22 -495.43 -2.59 -21.48 16 10 C 0.08 2.87 4.45 86.30 0.38 3.26 16 11 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 12 C -0.12 -4.40 7.89 71.98 0.57 -3.84 16 13 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 14 C 0.04 2.13 4.04 29.85 0.12 2.26 16 15 C -0.51 -28.49 7.65 25.60 0.20 -28.29 16 16 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 18 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 19 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 S 0.10 2.21 23.06 -56.49 -1.30 0.91 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.23 8.13 -2.38 -0.02 1.21 16 31 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 32 H 0.34 9.14 6.51 -89.70 -0.58 8.55 16 33 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 34 H 0.03 0.85 7.43 -2.39 -0.02 0.83 16 35 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 36 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 37 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.04 1.61 6.61 -2.39 -0.02 1.59 16 40 H 0.06 2.23 7.60 -2.39 -0.02 2.21 16 41 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 42 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 43 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -63.47 353.18 3.34 -60.13 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.39 Total: 15.45 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 4.53 Total: -44.53 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.30 Total: -78.70 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.30 Total: 0.91 kcal Total: -63.47 3.34 -60.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.179 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds