Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33396 * 125.20190 * 2 1 4 4 C 1.38423 * 114.91799 * 179.75475 * 3 2 1 5 5 C 1.33383 * 114.92354 * 0.42195 * 4 3 2 6 6 C 1.50701 * 125.20533 * 179.86401 * 5 4 3 7 7 H 1.09002 * 109.47060 * 19.72276 * 6 5 4 8 8 C 1.52997 * 109.47212 * 259.72221 * 6 5 4 9 9 N 1.46896 * 109.47239 * 139.72430 * 6 5 4 10 10 C 1.46901 * 110.99913 * 205.00362 * 9 6 5 11 11 C 1.53002 * 109.47317 * 180.02562 * 10 9 6 12 12 C 1.53009 * 109.46826 * 299.99657 * 11 10 9 13 13 C 1.53003 * 109.47451 * 59.99229 * 11 10 9 14 14 C 1.52991 * 109.47310 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47479 * 179.97438 * 14 11 10 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00420 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00101 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46943 * 90.00041 * 19 17 15 21 21 H 1.48504 * 109.47149 * 210.00169 * 19 17 15 22 22 H 1.48501 * 109.47147 * 330.00280 * 19 17 15 23 23 S 1.75879 * 125.20565 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47118 * 300.00165 * 1 2 3 26 26 H 1.09001 * 109.47052 * 60.00051 * 1 2 3 27 27 H 1.08001 * 122.53942 * 359.97438 * 3 2 1 28 28 H 1.07999 * 122.53697 * 180.27549 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 30 30 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 32 32 H 1.00896 * 111.00728 * 81.04506 * 9 6 5 33 33 H 1.09007 * 109.47248 * 299.99411 * 10 9 6 34 34 H 1.08990 * 109.47767 * 59.99672 * 10 9 6 35 35 H 1.08995 * 109.47213 * 59.99722 * 12 11 10 36 36 H 1.08998 * 109.47079 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.46521 * 300.00017 * 12 11 10 38 38 H 1.09001 * 109.46701 * 60.00158 * 13 11 10 39 39 H 1.08994 * 109.46989 * 180.02562 * 13 11 10 40 40 H 1.08995 * 109.47035 * 300.00551 * 13 11 10 41 41 H 1.08998 * 109.47265 * 299.99539 * 14 11 10 42 42 H 1.09000 * 109.47802 * 59.99535 * 14 11 10 43 43 H 0.96999 * 119.99973 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 3.9751 -0.4476 0.0008 6 6 5.3860 -0.9770 0.0022 7 1 6.0651 -0.2003 0.3539 8 6 5.7767 -1.3912 -1.4179 9 7 5.4711 -2.1420 0.8928 10 6 6.8410 -2.3251 1.3908 11 6 6.8899 -3.5454 2.3123 12 6 5.9422 -3.3303 3.4942 13 6 6.4596 -4.7902 1.5336 14 6 8.3167 -3.7364 2.8304 15 6 8.3648 -4.9381 3.7386 16 1 7.4672 -5.5083 3.9277 17 6 9.5545 -5.3096 4.3281 18 7 10.6475 -4.6156 4.0975 19 14 9.6139 -6.7987 5.4544 20 1 9.9180 -8.0124 4.6547 21 1 10.6713 -6.6029 6.4786 22 1 8.2995 -6.9645 6.1254 23 16 2.5209 -1.4371 0.0006 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8668 2.0895 -0.0004 28 1 4.3720 1.6350 0.0104 29 1 5.7136 -0.5268 -2.0789 30 1 6.7974 -1.7736 -1.4172 31 1 5.0976 -2.1678 -1.7697 32 1 5.1400 -2.9756 0.4307 33 1 7.5161 -2.4788 0.5489 34 1 7.1477 -1.4382 1.9452 35 1 4.9258 -3.1945 3.1248 36 1 5.9766 -4.1999 4.1505 37 1 6.2487 -2.4435 4.0489 38 1 7.1347 -4.9434 0.6917 39 1 6.4940 -5.6594 2.1903 40 1 5.4432 -4.6543 1.1642 41 1 8.9915 -3.8899 1.9883 42 1 8.6237 -2.8498 3.3851 43 1 11.4845 -4.8767 4.5125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 5.161300 kcal Electronic energy + Delta-G solvation = -19873.944632 eV Core-core repulsion = 17044.680016 eV Total energy + Delta-G solvation = -2829.264617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.55981 -37.53309 -35.34905 -32.52200 -31.65054 -29.50212 -26.86625 -26.60432 -26.30574 -25.14565 -23.24099 -22.44323 -21.39203 -19.08086 -17.79629 -16.75294 -16.22697 -15.52448 -14.89239 -14.84800 -14.31457 -14.07320 -13.98581 -13.33731 -13.19281 -13.07046 -12.94415 -12.61676 -12.40523 -12.00317 -11.94297 -11.80886 -11.69560 -11.55499 -11.21709 -10.97905 -10.85514 -10.76162 -10.58062 -10.47451 -10.25654 -10.11470 -9.67783 -9.02292 -8.83271 -8.44439 -8.38904 -8.30567 -8.10128 -5.95173 -3.95131 1.02930 1.65714 2.08794 2.74426 3.34111 3.40776 3.43929 4.34741 4.51338 4.76700 4.81876 5.09038 5.11006 5.22290 5.32919 5.40724 5.42397 5.57624 5.62735 5.66148 5.73572 5.78078 5.84230 5.97113 6.03680 6.15621 6.25792 6.32681 6.34677 6.51726 6.52156 6.68635 6.80574 6.85117 7.21233 7.22171 7.28175 7.38069 7.62070 7.71713 7.86690 8.05217 8.49747 9.10237 9.67667 11.16541 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.003359 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.089975 B = 8333.268400 C = 8674.931127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.199 4.199 3 C -0.138 4.138 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.148 3.852 7 H 0.093 0.907 8 C -0.178 4.178 9 N -0.679 5.679 10 C 0.071 3.929 11 C -0.058 4.058 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 S 0.122 5.878 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.339 0.661 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 9.696 -11.157 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.316 4.316 3 C -0.169 4.169 4 C -0.179 4.179 5 C -0.263 4.263 6 C 0.036 3.964 7 H 0.111 0.889 8 C -0.237 4.237 9 N -0.311 5.311 10 C -0.057 4.057 11 C -0.058 4.058 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.003 4.003 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.199 1.199 23 S 0.386 5.614 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.131 8.483 -10.542 21.831 hybrid contribution 1.029 0.463 -0.116 1.135 sum -16.102 8.946 -10.658 21.281 Atomic orbital electron populations 1.20270 0.88263 1.02632 1.02556 1.24503 0.99813 0.96442 1.10882 1.19938 0.92892 0.98964 1.05108 1.19965 0.96104 0.95791 1.06015 1.24534 0.98221 0.96226 1.07298 1.20003 0.89929 0.94846 0.91636 0.88854 1.22512 1.02035 1.01981 0.97169 1.60684 1.24882 1.05917 1.39603 1.22152 0.86527 0.99800 0.97263 1.20632 0.99295 0.91754 0.94166 1.21598 0.97488 1.00899 0.97347 1.21771 0.97898 0.99265 0.99695 1.19114 0.88614 0.96896 0.95690 1.21240 0.94399 1.11700 1.27112 0.92291 1.25012 0.95925 0.96774 0.96885 1.69965 0.99586 1.39666 1.44582 0.86669 0.77704 0.83359 0.80725 1.20840 1.21381 1.19896 1.84241 0.96022 1.08813 1.72310 0.91662 0.90869 0.90974 0.84943 0.84795 0.91971 0.91681 0.92376 0.84089 0.95571 0.91417 0.93857 0.92710 0.94193 0.94093 0.91675 0.94891 0.96933 0.96687 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.00 0.37 -0.24 16 2 C -0.20 -2.13 6.51 -36.00 -0.23 -2.37 16 3 C -0.14 -1.49 10.05 -41.21 -0.41 -1.90 16 4 C -0.15 -1.71 10.04 -41.21 -0.41 -2.13 16 5 C -0.14 -1.79 5.46 -36.00 -0.20 -1.99 16 6 C 0.15 1.86 3.02 -68.87 -0.21 1.65 16 7 H 0.09 1.18 7.78 -51.93 -0.40 0.78 16 8 C -0.18 -1.97 9.14 37.16 0.34 -1.63 16 9 N -0.68 -9.87 5.22 -107.95 -0.56 -10.44 16 10 C 0.07 1.21 4.45 -3.82 -0.02 1.19 16 11 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 12 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 13 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 14 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 15 C -0.51 -13.86 7.65 -34.44 -0.26 -14.13 16 16 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 S 0.12 1.44 23.06 -107.50 -2.48 -1.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.34 4.82 6.51 -39.29 -0.26 4.56 16 33 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 34 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 35 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 36 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 40 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -29.42 353.18 -10.11 -39.53 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.36 Total: 0.82 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -0.74 Total: -24.67 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.17 Total: -36.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.42 -10.11 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.690 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds