Wall clock time and date at job start Tue Mar 31 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33396 * 125.20190 * 2 1 4 4 C 1.38423 * 114.91799 * 179.75475 * 3 2 1 5 5 C 1.33383 * 114.92354 * 0.42195 * 4 3 2 6 6 C 1.50701 * 125.20533 * 179.86401 * 5 4 3 7 7 H 1.09002 * 109.47060 * 19.72276 * 6 5 4 8 8 C 1.52997 * 109.47212 * 259.72221 * 6 5 4 9 9 N 1.46896 * 109.47239 * 139.72430 * 6 5 4 10 10 C 1.46901 * 110.99913 * 205.00362 * 9 6 5 11 11 C 1.53002 * 109.47317 * 180.02562 * 10 9 6 12 12 C 1.53009 * 109.46826 * 299.99657 * 11 10 9 13 13 C 1.53003 * 109.47451 * 59.99229 * 11 10 9 14 14 C 1.52991 * 109.47310 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47479 * 179.97438 * 14 11 10 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00420 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00101 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46943 * 90.00041 * 19 17 15 21 21 H 1.48504 * 109.47149 * 210.00169 * 19 17 15 22 22 H 1.48501 * 109.47147 * 330.00280 * 19 17 15 23 23 S 1.75879 * 125.20565 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47118 * 300.00165 * 1 2 3 26 26 H 1.09001 * 109.47052 * 60.00051 * 1 2 3 27 27 H 1.08001 * 122.53942 * 359.97438 * 3 2 1 28 28 H 1.07999 * 122.53697 * 180.27549 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 30 30 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 32 32 H 1.00896 * 111.00728 * 81.04506 * 9 6 5 33 33 H 1.09007 * 109.47248 * 299.99411 * 10 9 6 34 34 H 1.08990 * 109.47767 * 59.99672 * 10 9 6 35 35 H 1.08995 * 109.47213 * 59.99722 * 12 11 10 36 36 H 1.08998 * 109.47079 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.46521 * 300.00017 * 12 11 10 38 38 H 1.09001 * 109.46701 * 60.00158 * 13 11 10 39 39 H 1.08994 * 109.46989 * 180.02562 * 13 11 10 40 40 H 1.08995 * 109.47035 * 300.00551 * 13 11 10 41 41 H 1.08998 * 109.47265 * 299.99539 * 14 11 10 42 42 H 1.09000 * 109.47802 * 59.99535 * 14 11 10 43 43 H 0.96999 * 119.99973 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 3.9751 -0.4476 0.0008 6 6 5.3860 -0.9770 0.0022 7 1 6.0651 -0.2003 0.3539 8 6 5.7767 -1.3912 -1.4179 9 7 5.4711 -2.1420 0.8928 10 6 6.8410 -2.3251 1.3908 11 6 6.8899 -3.5454 2.3123 12 6 5.9422 -3.3303 3.4942 13 6 6.4596 -4.7902 1.5336 14 6 8.3167 -3.7364 2.8304 15 6 8.3648 -4.9381 3.7386 16 1 7.4672 -5.5083 3.9277 17 6 9.5545 -5.3096 4.3281 18 7 10.6475 -4.6156 4.0975 19 14 9.6139 -6.7987 5.4544 20 1 9.9180 -8.0124 4.6547 21 1 10.6713 -6.6029 6.4786 22 1 8.2995 -6.9645 6.1254 23 16 2.5209 -1.4371 0.0006 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8668 2.0895 -0.0004 28 1 4.3720 1.6350 0.0104 29 1 5.7136 -0.5268 -2.0789 30 1 6.7974 -1.7736 -1.4172 31 1 5.0976 -2.1678 -1.7697 32 1 5.1400 -2.9756 0.4307 33 1 7.5161 -2.4788 0.5489 34 1 7.1477 -1.4382 1.9452 35 1 4.9258 -3.1945 3.1248 36 1 5.9766 -4.1999 4.1505 37 1 6.2487 -2.4435 4.0489 38 1 7.1347 -4.9434 0.6917 39 1 6.4940 -5.6594 2.1903 40 1 5.4432 -4.6543 1.1642 41 1 8.9915 -3.8899 1.9883 42 1 8.6237 -2.8498 3.3851 43 1 11.4845 -4.8767 4.5125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:33 Heat of formation + Delta-G solvation = -9.905071 kcal Electronic energy + Delta-G solvation = -19874.597959 eV Core-core repulsion = 17044.680016 eV Total energy + Delta-G solvation = -2829.917944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.70620 -38.70088 -36.65289 -34.47327 -32.64653 -30.65637 -28.79975 -27.90316 -27.42277 -26.62375 -24.60368 -23.73984 -22.45191 -20.13158 -19.22935 -18.32382 -17.71493 -16.60120 -16.55750 -15.97419 -15.77168 -15.29181 -14.89641 -14.56722 -14.48671 -14.38925 -13.93127 -13.90303 -13.78789 -13.40217 -13.19476 -12.85298 -12.79646 -12.71248 -12.64539 -12.49914 -12.38418 -12.26399 -12.12927 -12.04996 -11.88337 -11.45021 -11.39025 -10.86806 -10.75310 -10.49964 -9.43078 -9.26133 -9.17396 -8.13673 -6.20400 0.17474 0.80568 1.22692 1.40895 1.41493 1.52162 1.90323 2.43997 3.20380 3.22216 3.82796 4.05068 4.10334 4.17153 4.27945 4.30591 4.39098 4.47762 4.65220 4.69456 4.75986 4.79401 4.81580 4.86694 4.91042 4.96647 5.07631 5.13316 5.16699 5.21282 5.22261 5.33552 5.47344 5.52128 5.54329 5.58300 5.64516 5.71250 5.87311 5.93147 6.05723 6.37402 6.44889 6.94667 7.46869 8.98675 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.003359 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.089975 B = 8333.268400 C = 8674.931127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.196 4.196 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.164 4.164 6 C 0.150 3.850 7 H 0.090 0.910 8 C -0.171 4.171 9 N -0.678 5.678 10 C 0.085 3.915 11 C -0.055 4.055 12 C -0.106 4.106 13 C -0.122 4.122 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 S 0.100 5.900 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.343 0.657 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.063 0.937 41 H -0.014 1.014 42 H -0.016 1.016 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 9.774 -11.644 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.314 4.314 3 C -0.180 4.180 4 C -0.180 4.180 5 C -0.282 4.282 6 C 0.038 3.962 7 H 0.108 0.892 8 C -0.230 4.230 9 N -0.309 5.309 10 C -0.044 4.044 11 C -0.055 4.055 12 C -0.163 4.163 13 C -0.179 4.179 14 C 0.004 3.996 15 C -0.552 4.552 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.780 3.220 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.188 1.188 23 S 0.364 5.636 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.309 8.562 -11.039 23.833 hybrid contribution 1.648 0.523 0.006 1.729 sum -17.661 9.085 -11.033 22.719 Atomic orbital electron populations 1.20386 0.86281 1.03330 1.03831 1.24905 1.01136 0.95605 1.09722 1.20201 0.92569 1.00057 1.05162 1.20241 0.96981 0.95817 1.04968 1.24486 0.97981 0.96695 1.09039 1.19986 0.90442 0.93776 0.91953 0.89217 1.22434 1.01604 1.02542 0.96441 1.60595 1.22805 1.06799 1.40744 1.21832 0.88168 0.97850 0.96560 1.20494 0.95912 0.93992 0.95117 1.21490 0.98465 0.99608 0.96757 1.21677 0.99682 0.97541 0.98999 1.18986 0.91543 0.94941 0.94140 1.21622 0.94542 1.12109 1.26918 0.91683 1.25903 0.95664 0.99845 0.98638 1.70104 1.00217 1.41603 1.45998 0.85593 0.77997 0.79703 0.78665 1.20037 1.21273 1.18784 1.84248 0.96495 1.09972 1.72860 0.91300 0.89791 0.89353 0.82865 0.83686 0.90747 0.92274 0.92081 0.83695 0.95681 0.92372 0.91713 0.94316 0.95206 0.94233 0.93413 0.91779 0.99592 0.99769 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.38 71.23 0.74 -0.30 16 2 C -0.20 -3.77 6.51 24.59 0.16 -3.61 16 3 C -0.15 -2.87 10.05 21.22 0.21 -2.66 16 4 C -0.15 -3.18 10.04 21.21 0.21 -2.97 16 5 C -0.16 -3.82 5.46 24.59 0.13 -3.69 16 6 C 0.15 3.60 3.02 44.17 0.13 3.73 16 7 H 0.09 2.21 7.78 -2.39 -0.02 2.19 16 8 C -0.17 -3.56 9.14 71.98 0.66 -2.90 16 9 N -0.68 -18.90 5.22 -495.46 -2.59 -21.49 16 10 C 0.08 2.88 4.45 86.30 0.38 3.26 16 11 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 12 C -0.11 -4.12 8.06 71.99 0.58 -3.54 16 13 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 14 C 0.04 2.15 4.04 29.84 0.12 2.27 16 15 C -0.51 -28.57 7.65 25.60 0.20 -28.37 16 16 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 19 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 S 0.10 2.21 23.06 -56.49 -1.30 0.91 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.34 9.14 6.51 -89.70 -0.58 8.56 16 33 H 0.02 0.85 7.44 -2.38 -0.02 0.83 16 34 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 35 H 0.06 2.23 7.60 -2.39 -0.02 2.21 16 36 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 40 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -63.46 353.18 3.34 -60.12 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.39 Total: 15.58 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.53 Total: -44.57 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -2.30 Total: -78.75 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.30 Total: 0.91 kcal Total: -63.46 3.34 -60.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.210 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds