Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46489 * 2 1 4 4 H 1.08995 * 109.47312 * 54.72108 * 3 2 1 5 5 N 1.46899 * 109.46672 * 174.71808 * 3 2 1 6 6 C 1.46905 * 111.00057 * 273.11088 * 5 3 2 7 7 C 1.52999 * 109.47021 * 185.38680 * 6 5 3 8 8 C 1.53005 * 109.47218 * 300.00154 * 7 6 5 9 9 C 1.52998 * 109.47117 * 60.00097 * 7 6 5 10 10 C 1.52998 * 109.47184 * 180.02562 * 7 6 5 11 11 C 1.50691 * 109.47326 * 180.02562 * 10 7 6 12 12 H 1.08004 * 120.00341 * 0.02562 * 11 10 7 13 13 C 1.37878 * 120.00145 * 179.97438 * 11 10 7 14 14 N 1.31515 * 119.99949 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00310 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47489 * 119.99644 * 15 13 11 18 18 H 1.48501 * 109.47246 * 240.00105 * 15 13 11 19 19 C 1.50693 * 109.46984 * 294.71537 * 3 2 1 20 20 C 1.33397 * 125.19876 * 99.72090 * 19 3 2 21 21 C 1.38425 * 114.91611 * 179.85819 * 20 19 3 22 22 C 1.33386 * 114.92382 * 0.43351 * 21 20 19 23 23 S 1.75879 * 125.20824 * 280.02674 * 19 3 2 24 24 H 1.09003 * 109.46529 * 185.66705 * 1 2 3 25 25 H 1.09001 * 109.47349 * 305.66964 * 1 2 3 26 26 H 1.09002 * 109.47509 * 65.67506 * 1 2 3 27 27 H 1.08998 * 109.46984 * 119.99440 * 2 1 3 28 28 H 1.08994 * 109.47678 * 240.00474 * 2 1 3 29 29 H 1.00902 * 111.00469 * 37.06721 * 5 3 2 30 30 H 1.09001 * 109.46956 * 305.38697 * 6 5 3 31 31 H 1.09001 * 109.46745 * 65.38690 * 6 5 3 32 32 H 1.09002 * 109.46746 * 60.00339 * 8 7 6 33 33 H 1.09002 * 109.46757 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47064 * 299.99849 * 8 7 6 35 35 H 1.09000 * 109.46785 * 59.99929 * 9 7 6 36 36 H 1.09001 * 109.47017 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47256 * 300.00142 * 9 7 6 38 38 H 1.09000 * 109.47117 * 300.00315 * 10 7 6 39 39 H 1.09001 * 109.46827 * 59.99860 * 10 7 6 40 40 H 0.96999 * 119.99816 * 179.97438 * 14 13 11 41 41 H 1.07993 * 122.54084 * 0.02562 * 20 19 3 42 42 H 1.08004 * 122.53842 * 180.20581 * 21 20 19 43 43 H 1.08007 * 125.20666 * 179.75353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 1 1.6014 1.9830 0.8389 5 7 3.5033 1.4447 0.1275 6 6 3.9089 1.4130 1.5391 7 6 5.4295 1.5514 1.6361 8 6 6.0956 0.3948 0.8880 9 6 5.8616 2.8793 1.0110 10 6 5.8519 1.5178 3.1062 11 6 7.3496 1.6547 3.2018 12 1 7.9410 1.7560 2.3038 13 6 7.9648 1.6517 4.4357 14 7 7.2445 1.5298 5.5293 15 14 9.8212 1.8221 4.5543 16 1 10.3953 1.9439 3.1901 17 1 10.1577 3.0342 5.3434 18 1 10.3867 0.6230 5.2234 19 6 1.6472 2.1142 -1.2906 20 6 0.6086 2.9371 -1.4442 21 6 0.4455 3.4376 -2.7245 22 6 1.3461 3.0141 -3.6126 23 16 2.4834 1.9269 -2.8265 24 1 -0.3632 -1.0227 0.1015 25 1 -0.3634 0.5992 0.8349 26 1 -0.3634 0.4233 -0.9364 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 3.9119 0.6765 -0.3834 30 1 3.4343 2.2370 2.0720 31 1 3.6009 0.4669 1.9844 32 1 5.7947 0.4184 -0.1594 33 1 7.1790 0.4937 0.9567 34 1 5.7878 -0.5512 1.3333 35 1 5.3871 3.7032 1.5440 36 1 6.9449 2.9781 1.0805 37 1 5.5607 2.9028 -0.0363 38 1 5.3774 2.3414 3.6395 39 1 5.5441 0.5715 3.5511 40 1 7.6774 1.5273 6.3974 41 1 -0.0531 3.1955 -0.6308 42 1 -0.3529 4.1166 -2.9854 43 1 1.3727 3.2955 -4.6550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = 6.985206 kcal Electronic energy + Delta-G solvation = -20144.721526 eV Core-core repulsion = 17315.536000 eV Total energy + Delta-G solvation = -2829.185526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.72144 -37.37987 -35.57201 -32.65890 -31.45486 -29.55823 -27.02960 -26.31786 -26.11050 -24.36931 -23.39680 -22.28583 -21.19786 -19.31740 -17.98503 -16.95316 -16.21033 -15.63274 -15.29457 -14.79479 -14.53571 -14.27789 -13.74273 -13.43502 -12.89847 -12.74794 -12.68350 -12.57245 -12.49242 -12.01728 -11.92510 -11.81492 -11.57564 -11.32962 -11.04858 -10.95942 -10.82895 -10.73190 -10.58263 -10.46980 -10.27337 -10.10188 -9.66451 -9.02034 -8.83181 -8.62064 -8.39724 -8.30694 -8.10390 -5.95175 -3.94968 1.05594 1.70365 2.10713 2.76261 3.33369 3.41286 3.44943 4.31130 4.51204 4.74214 4.84727 5.02633 5.07352 5.31775 5.40895 5.46605 5.49460 5.58245 5.62903 5.70013 5.80464 5.87462 5.97930 6.01642 6.08777 6.14817 6.25394 6.33167 6.35138 6.48272 6.52769 6.70300 6.81752 6.86213 7.20701 7.23124 7.28953 7.38154 7.60578 7.72064 7.87002 8.05430 8.50136 9.10702 9.67901 11.16569 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003657 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.148017 B = 7655.504420 C = 8093.946835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.151 3.849 4 H 0.093 0.907 5 N -0.679 5.679 6 C 0.071 3.929 7 C -0.056 4.056 8 C -0.128 4.128 9 C -0.116 4.116 10 C 0.034 3.966 11 C -0.505 4.505 12 H 0.060 0.940 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.135 4.135 20 C -0.154 4.154 21 C -0.131 4.131 22 C -0.234 4.234 23 S 0.119 5.881 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.014 0.986 39 H 0.012 0.988 40 H 0.258 0.742 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -0.605 -15.777 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C 0.039 3.961 4 H 0.111 0.889 5 N -0.309 5.309 6 C -0.057 4.057 7 C -0.057 4.057 8 C -0.186 4.186 9 C -0.173 4.173 10 C -0.004 4.004 11 C -0.544 4.544 12 H 0.078 0.922 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.254 4.254 20 C -0.184 4.184 21 C -0.162 4.162 22 C -0.369 4.369 23 S 0.382 5.618 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.032 -0.731 -16.134 20.753 hybrid contribution -0.460 0.063 0.931 1.041 sum -13.492 -0.668 -15.203 20.338 Atomic orbital electron populations 1.21717 0.95234 1.01495 1.02066 1.22273 0.97169 0.96974 1.02499 1.20123 0.89644 0.93868 0.92495 0.88883 1.60646 1.05571 1.50901 1.13823 1.22160 0.97686 0.99497 0.86363 1.20611 0.90717 0.95174 0.99173 1.21764 1.02035 0.97544 0.97241 1.21593 1.00954 0.96058 0.98707 1.19126 0.96211 0.96844 0.88213 1.21279 0.92296 1.48721 0.92061 0.92228 1.25015 0.97820 0.95727 0.96051 1.69977 1.35015 1.51253 0.97554 0.86617 0.86292 0.77537 0.78049 1.19759 1.21163 1.21212 1.24567 0.99111 1.03421 0.98295 1.20015 0.99923 1.00507 0.98004 1.20076 1.00775 1.02540 0.92852 1.25604 1.01277 1.06431 1.03633 1.84290 1.31010 1.45688 1.00767 0.92891 0.92638 0.92423 0.91131 0.91728 0.84116 0.91465 0.95578 0.94797 0.91753 0.94159 0.94292 0.92749 0.93771 0.96723 0.96943 0.93249 0.84798 0.84873 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.58 37.16 0.36 -1.03 16 2 C -0.15 -1.61 5.37 -26.72 -0.14 -1.76 16 3 C 0.15 1.84 2.50 -68.86 -0.17 1.67 16 4 H 0.09 1.17 7.66 -51.93 -0.40 0.77 16 5 N -0.68 -9.64 5.14 -107.95 -0.56 -10.19 16 6 C 0.07 1.20 4.47 -3.82 -0.02 1.18 16 7 C -0.06 -1.11 0.60 -154.51 -0.09 -1.21 16 8 C -0.13 -2.38 7.88 37.16 0.29 -2.08 16 9 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 10 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 11 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 12 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.14 -1.61 4.70 -36.00 -0.17 -1.78 16 20 C -0.15 -1.70 9.49 -41.20 -0.39 -2.09 16 21 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 22 C -0.23 -2.39 11.23 29.04 0.33 -2.06 16 23 S 0.12 1.36 23.07 -107.50 -2.48 -1.12 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 7.19 -51.93 -0.37 0.17 16 27 H 0.07 0.80 7.57 -51.93 -0.39 0.41 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.34 4.68 6.73 -39.29 -0.26 4.42 16 30 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.03 0.44 7.60 -51.93 -0.39 0.04 16 32 H 0.03 0.54 6.70 -51.93 -0.35 0.19 16 33 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 37 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -29.11 350.96 -9.96 -39.07 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.33 Total: 1.28 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.60 Total: -24.82 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.18 Total: -36.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.48 Total: -1.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.11 -9.96 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.057 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds