Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46489 * 2 1 4 4 H 1.08995 * 109.47312 * 54.72108 * 3 2 1 5 5 N 1.46899 * 109.46672 * 174.71808 * 3 2 1 6 6 C 1.46905 * 111.00057 * 273.11088 * 5 3 2 7 7 C 1.52999 * 109.47021 * 185.38680 * 6 5 3 8 8 C 1.53005 * 109.47218 * 300.00154 * 7 6 5 9 9 C 1.52998 * 109.47117 * 60.00097 * 7 6 5 10 10 C 1.52998 * 109.47184 * 180.02562 * 7 6 5 11 11 C 1.50691 * 109.47326 * 180.02562 * 10 7 6 12 12 H 1.08004 * 120.00341 * 0.02562 * 11 10 7 13 13 C 1.37878 * 120.00145 * 179.97438 * 11 10 7 14 14 N 1.31515 * 119.99949 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00310 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47489 * 119.99644 * 15 13 11 18 18 H 1.48501 * 109.47246 * 240.00105 * 15 13 11 19 19 C 1.50693 * 109.46984 * 294.71537 * 3 2 1 20 20 C 1.33397 * 125.19876 * 99.72090 * 19 3 2 21 21 C 1.38425 * 114.91611 * 179.85819 * 20 19 3 22 22 C 1.33386 * 114.92382 * 0.43351 * 21 20 19 23 23 S 1.75879 * 125.20824 * 280.02674 * 19 3 2 24 24 H 1.09003 * 109.46529 * 185.66705 * 1 2 3 25 25 H 1.09001 * 109.47349 * 305.66964 * 1 2 3 26 26 H 1.09002 * 109.47509 * 65.67506 * 1 2 3 27 27 H 1.08998 * 109.46984 * 119.99440 * 2 1 3 28 28 H 1.08994 * 109.47678 * 240.00474 * 2 1 3 29 29 H 1.00902 * 111.00469 * 37.06721 * 5 3 2 30 30 H 1.09001 * 109.46956 * 305.38697 * 6 5 3 31 31 H 1.09001 * 109.46745 * 65.38690 * 6 5 3 32 32 H 1.09002 * 109.46746 * 60.00339 * 8 7 6 33 33 H 1.09002 * 109.46757 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47064 * 299.99849 * 8 7 6 35 35 H 1.09000 * 109.46785 * 59.99929 * 9 7 6 36 36 H 1.09001 * 109.47017 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47256 * 300.00142 * 9 7 6 38 38 H 1.09000 * 109.47117 * 300.00315 * 10 7 6 39 39 H 1.09001 * 109.46827 * 59.99860 * 10 7 6 40 40 H 0.96999 * 119.99816 * 179.97438 * 14 13 11 41 41 H 1.07993 * 122.54084 * 0.02562 * 20 19 3 42 42 H 1.08004 * 122.53842 * 180.20581 * 21 20 19 43 43 H 1.08007 * 125.20666 * 179.75353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 1 1.6014 1.9830 0.8389 5 7 3.5033 1.4447 0.1275 6 6 3.9089 1.4130 1.5391 7 6 5.4295 1.5514 1.6361 8 6 6.0956 0.3948 0.8880 9 6 5.8616 2.8793 1.0110 10 6 5.8519 1.5178 3.1062 11 6 7.3496 1.6547 3.2018 12 1 7.9410 1.7560 2.3038 13 6 7.9648 1.6517 4.4357 14 7 7.2445 1.5298 5.5293 15 14 9.8212 1.8221 4.5543 16 1 10.3953 1.9439 3.1901 17 1 10.1577 3.0342 5.3434 18 1 10.3867 0.6230 5.2234 19 6 1.6472 2.1142 -1.2906 20 6 0.6086 2.9371 -1.4442 21 6 0.4455 3.4376 -2.7245 22 6 1.3461 3.0141 -3.6126 23 16 2.4834 1.9269 -2.8265 24 1 -0.3632 -1.0227 0.1015 25 1 -0.3634 0.5992 0.8349 26 1 -0.3634 0.4233 -0.9364 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 3.9119 0.6765 -0.3834 30 1 3.4343 2.2370 2.0720 31 1 3.6009 0.4669 1.9844 32 1 5.7947 0.4184 -0.1594 33 1 7.1790 0.4937 0.9567 34 1 5.7878 -0.5512 1.3333 35 1 5.3871 3.7032 1.5440 36 1 6.9449 2.9781 1.0805 37 1 5.5607 2.9028 -0.0363 38 1 5.3774 2.3414 3.6395 39 1 5.5441 0.5715 3.5511 40 1 7.6774 1.5273 6.3974 41 1 -0.0531 3.1955 -0.6308 42 1 -0.3529 4.1166 -2.9854 43 1 1.3727 3.2955 -4.6550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -7.897844 kcal Electronic energy + Delta-G solvation = -20145.366904 eV Core-core repulsion = 17315.536000 eV Total energy + Delta-G solvation = -2829.830904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82315 -38.58545 -36.77285 -34.56948 -32.74270 -30.45210 -28.95769 -27.88306 -27.34953 -25.79652 -24.29458 -23.92554 -22.13116 -20.24859 -19.43083 -18.32209 -17.96869 -16.63110 -16.56306 -16.25444 -15.75689 -15.44581 -15.15652 -14.82740 -14.36951 -14.09410 -13.89859 -13.67013 -13.49414 -13.35185 -13.18306 -12.92807 -12.76971 -12.67317 -12.61137 -12.44683 -12.24548 -12.19126 -12.09539 -11.88474 -11.80944 -11.42978 -11.36400 -10.85669 -10.74629 -10.50199 -9.52413 -9.27074 -9.20229 -8.13477 -6.20015 0.22844 0.87225 1.28343 1.40129 1.41443 1.53420 1.95563 2.44207 3.20682 3.21249 3.80983 3.94702 4.14893 4.20660 4.25753 4.33953 4.40219 4.49933 4.59407 4.72964 4.76328 4.80246 4.82790 4.88692 4.97132 5.08760 5.09321 5.16087 5.22605 5.23771 5.30613 5.34897 5.51802 5.53418 5.55453 5.59440 5.64713 5.70218 5.88381 5.93968 6.05991 6.38076 6.45491 6.95310 7.47289 8.99035 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003657 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.148017 B = 7655.504420 C = 8093.946835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.145 4.145 3 C 0.154 3.846 4 H 0.087 0.913 5 N -0.677 5.677 6 C 0.086 3.914 7 C -0.053 4.053 8 C -0.121 4.121 9 C -0.106 4.106 10 C 0.040 3.960 11 C -0.513 4.513 12 H 0.065 0.935 13 C -0.004 4.004 14 N -0.938 5.938 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.230 4.230 23 S 0.099 5.901 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.344 0.656 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.065 0.935 38 H -0.016 1.016 39 H -0.014 1.014 40 H 0.259 0.741 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 -0.416 -17.803 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.042 3.958 4 H 0.105 0.895 5 N -0.308 5.308 6 C -0.043 4.043 7 C -0.053 4.053 8 C -0.178 4.178 9 C -0.163 4.163 10 C 0.003 3.997 11 C -0.551 4.551 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.579 5.579 15 Si 0.780 3.220 16 H -0.185 1.185 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.271 4.271 20 C -0.185 4.185 21 C -0.170 4.170 22 C -0.365 4.365 23 S 0.362 5.638 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.068 0.932 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.402 -0.544 -18.184 22.596 hybrid contribution -0.426 0.035 1.526 1.584 sum -13.828 -0.509 -16.659 21.656 Atomic orbital electron populations 1.21671 0.94057 1.02111 1.02170 1.22202 0.98166 0.95858 1.02172 1.20087 0.88058 0.94796 0.92810 0.89475 1.60552 1.07304 1.51188 1.11752 1.21830 0.95313 0.99068 0.88134 1.20470 0.93034 0.96130 0.95688 1.21670 1.00581 0.96700 0.98885 1.21485 0.99639 0.95413 0.99755 1.19000 0.95184 0.94034 0.91485 1.21651 0.93504 1.47695 0.92227 0.91708 1.25897 1.02709 0.95604 0.95822 1.70112 1.37064 1.52614 0.98124 0.85548 0.80503 0.77471 0.78459 1.18536 1.20886 1.20777 1.24498 0.99995 1.04485 0.98152 1.20269 0.99615 0.99766 0.98841 1.20350 1.01424 1.02820 0.92389 1.25919 1.00430 1.05485 1.04695 1.84312 1.31882 1.46596 1.00975 0.92047 0.92453 0.92343 0.91947 0.91480 0.83653 0.92392 0.95741 0.91694 0.93588 0.94282 0.95277 0.94404 0.91631 0.99788 0.99600 0.93193 0.83824 0.82642 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.58 71.98 0.69 -1.77 16 2 C -0.14 -2.94 5.37 30.60 0.16 -2.78 16 3 C 0.15 3.59 2.50 44.17 0.11 3.70 16 4 H 0.09 2.13 7.66 -2.39 -0.02 2.11 16 5 N -0.68 -18.44 5.14 -495.44 -2.55 -20.99 16 6 C 0.09 2.87 4.47 86.30 0.39 3.25 16 7 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 8 C -0.12 -4.38 7.88 71.98 0.57 -3.81 16 9 C -0.11 -4.10 8.06 71.98 0.58 -3.51 16 10 C 0.04 2.10 4.04 29.84 0.12 2.22 16 11 C -0.51 -28.49 7.65 25.60 0.20 -28.29 16 12 H 0.06 3.48 5.68 -2.91 -0.02 3.46 16 13 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 14 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 15 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.15 -3.40 4.70 24.59 0.12 -3.28 16 20 C -0.15 -3.09 9.49 21.22 0.20 -2.89 16 21 C -0.14 -2.48 10.18 21.22 0.22 -2.26 16 22 C -0.23 -4.10 11.23 66.72 0.75 -3.36 16 23 S 0.10 2.08 23.07 -56.49 -1.30 0.78 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 1.01 7.19 -2.39 -0.02 0.99 16 27 H 0.06 1.37 7.57 -2.39 -0.02 1.35 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.34 8.89 6.73 -89.69 -0.60 8.28 16 30 H 0.06 2.04 7.92 -2.39 -0.02 2.02 16 31 H 0.02 0.82 7.60 -2.39 -0.02 0.80 16 32 H 0.06 1.93 6.70 -2.39 -0.02 1.92 16 33 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 37 H 0.06 2.25 7.60 -2.39 -0.02 2.23 16 38 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -62.73 350.96 3.35 -59.38 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.37 Total: 15.91 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 4.53 Total: -44.65 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.26 Total: -78.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.30 Total: 0.78 kcal Total: -62.73 3.35 -59.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.482 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds