Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 H 1.08997 * 109.46836 * 305.59774 * 3 2 1 5 5 N 1.46904 * 109.47039 * 185.60335 * 3 2 1 6 6 C 1.46895 * 111.00464 * 86.15602 * 5 3 2 7 7 C 1.52997 * 109.47241 * 174.41461 * 6 5 3 8 8 C 1.52997 * 109.47245 * 300.00545 * 7 6 5 9 9 C 1.53009 * 109.46841 * 60.00489 * 7 6 5 10 10 C 1.52999 * 109.47231 * 179.97438 * 7 6 5 11 11 C 1.50694 * 109.47315 * 180.02562 * 10 7 6 12 12 H 1.08006 * 120.00187 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00111 * 180.02562 * 11 10 7 14 14 N 1.31509 * 119.99994 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99775 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47348 * 59.99843 * 15 13 11 17 17 H 1.48506 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47466 * 299.99709 * 15 13 11 19 19 C 1.50693 * 109.47165 * 65.59913 * 3 2 1 20 20 C 1.33391 * 125.20678 * 260.00010 * 19 3 2 21 21 C 1.38417 * 114.92641 * 179.97438 * 20 19 3 22 22 C 1.33389 * 114.91907 * 359.97438 * 21 20 19 23 23 S 1.75884 * 109.59434 * 359.76299 * 22 21 20 24 24 H 1.08997 * 109.47400 * 63.66664 * 1 2 3 25 25 H 1.09005 * 109.47315 * 183.66505 * 1 2 3 26 26 H 1.09002 * 109.47150 * 303.66519 * 1 2 3 27 27 H 1.08998 * 109.46968 * 239.99866 * 2 1 3 28 28 H 1.09000 * 109.47277 * 119.99987 * 2 1 3 29 29 H 1.00902 * 110.99503 * 322.20063 * 5 3 2 30 30 H 1.08995 * 109.46972 * 294.42012 * 6 5 3 31 31 H 1.08997 * 109.46963 * 54.41529 * 6 5 3 32 32 H 1.08998 * 109.47662 * 59.99813 * 8 7 6 33 33 H 1.09001 * 109.46768 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47096 * 299.99467 * 8 7 6 35 35 H 1.08995 * 109.47288 * 59.99501 * 9 7 6 36 36 H 1.09004 * 109.46730 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46885 * 299.99464 * 9 7 6 38 38 H 1.09001 * 109.47430 * 300.00420 * 10 7 6 39 39 H 1.08997 * 109.46886 * 60.00120 * 10 7 6 40 40 H 0.97003 * 120.00069 * 179.97438 * 14 13 11 41 41 H 1.08004 * 122.53467 * 359.97438 * 20 19 3 42 42 H 1.07998 * 122.54055 * 180.02562 * 21 20 19 43 43 H 1.07995 * 125.20278 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5970 1.9844 -0.8356 5 7 3.5027 1.4448 -0.1352 6 6 3.9009 1.3982 -1.5484 7 6 5.4204 1.5422 -1.6552 8 6 5.8499 2.8792 -1.0480 9 6 6.0956 0.3974 -0.8971 10 6 5.8352 1.4931 -3.1270 11 6 7.3318 1.6342 -3.2322 12 1 7.9277 1.7472 -2.3385 13 6 7.9405 1.6191 -4.4692 14 7 7.2150 1.4810 -5.5574 15 14 9.7958 1.7934 -4.5994 16 1 10.4503 0.6816 -3.8639 17 1 10.1983 1.7470 -6.0281 18 1 10.2138 3.0907 -4.0098 19 6 1.6540 2.1118 1.2938 20 6 0.6195 2.9386 1.4533 21 6 0.4601 3.4330 2.7363 22 6 1.3650 3.0073 3.6190 23 16 2.4936 1.9153 2.8269 24 1 -0.3634 0.4558 -0.9210 25 1 -0.3634 -1.0256 0.0657 26 1 -0.3633 0.5697 0.8553 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9147 0.6826 0.3819 30 1 3.5949 0.4457 -1.9809 31 1 3.4199 2.2137 -2.0885 32 1 5.5545 2.9138 0.0006 33 1 6.9325 2.9815 -1.1237 34 1 5.3689 3.6948 -1.5880 35 1 5.7895 -0.5552 -1.3296 36 1 7.1781 0.5002 -0.9728 37 1 5.8002 0.4319 0.1515 38 1 5.5292 0.5403 -3.5592 39 1 5.3541 2.3083 -3.6674 40 1 7.6432 1.4707 -6.4277 41 1 -0.0436 3.2024 0.6426 42 1 -0.3369 4.1114 3.0026 43 1 1.3974 3.2873 4.6616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = 7.042770 kcal Electronic energy + Delta-G solvation = -20144.479255 eV Core-core repulsion = 17315.296225 eV Total energy + Delta-G solvation = -2829.183030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.72951 -37.38311 -35.56992 -32.65642 -31.45321 -29.55987 -27.02841 -26.31669 -26.11404 -24.36998 -23.39735 -22.28538 -21.18948 -19.31998 -17.98667 -16.95699 -16.20450 -15.63860 -15.29181 -14.79283 -14.53288 -14.28881 -13.74805 -13.44420 -12.90260 -12.74399 -12.67726 -12.57592 -12.47875 -12.00959 -11.93229 -11.81923 -11.57793 -11.31417 -11.04957 -10.93017 -10.83135 -10.75964 -10.58109 -10.45779 -10.26971 -10.12531 -9.65935 -9.01619 -8.84902 -8.62421 -8.40055 -8.29852 -8.10424 -5.94652 -3.94624 1.05102 1.69877 2.10166 2.75768 3.36001 3.40508 3.42937 4.31123 4.51384 4.74411 4.85181 5.02752 5.07266 5.31209 5.41175 5.46724 5.49111 5.58133 5.63077 5.69823 5.80720 5.87692 5.98226 6.01712 6.08482 6.15215 6.25464 6.33096 6.35114 6.47852 6.52912 6.70348 6.81889 6.86290 7.20758 7.23217 7.28974 7.38192 7.60561 7.71899 7.87255 8.05653 8.50319 9.10526 9.68069 11.17021 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028689 B = 0.003655 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.761906 B = 7658.812754 C = 8098.730694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.151 3.849 4 H 0.093 0.907 5 N -0.679 5.679 6 C 0.071 3.929 7 C -0.056 4.056 8 C -0.116 4.116 9 C -0.128 4.128 10 C 0.034 3.966 11 C -0.507 4.507 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.277 1.277 19 C -0.135 4.135 20 C -0.154 4.154 21 C -0.131 4.131 22 C -0.233 4.233 23 S 0.118 5.882 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 -0.486 15.836 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C 0.039 3.961 4 H 0.111 0.889 5 N -0.309 5.309 6 C -0.057 4.057 7 C -0.057 4.057 8 C -0.173 4.173 9 C -0.186 4.186 10 C -0.003 4.003 11 C -0.545 4.545 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.254 4.254 20 C -0.184 4.184 21 C -0.162 4.162 22 C -0.369 4.369 23 S 0.382 5.618 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.957 -0.625 16.169 20.729 hybrid contribution -0.449 0.065 -0.894 1.003 sum -13.406 -0.559 15.274 20.331 Atomic orbital electron populations 1.21736 0.95252 1.01596 1.02109 1.22272 0.97175 0.96991 1.02499 1.20112 0.89683 0.93901 0.92439 0.88862 1.60650 1.05614 1.51326 1.13324 1.22155 0.97741 0.99452 0.86363 1.20612 0.90715 0.95182 0.99165 1.21591 1.00951 0.96006 0.98752 1.21763 1.02007 0.97594 0.97213 1.19115 0.96195 0.96824 0.88181 1.21204 0.92344 1.48910 0.92067 0.92348 1.25008 0.97784 0.95693 0.96061 1.69953 1.35201 1.50957 0.97701 0.86732 0.86260 0.78632 0.76814 1.20356 1.21457 1.20310 1.24561 0.99185 1.03359 0.98282 1.20018 0.99974 1.00506 0.97951 1.20075 1.00708 1.02591 0.92873 1.25602 1.01265 1.06361 1.03670 1.84291 1.31425 1.45334 1.00754 0.92678 0.92893 0.92241 0.91110 0.91762 0.84133 0.95574 0.91464 0.93774 0.92764 0.94288 0.94162 0.91764 0.94796 0.96957 0.96733 0.93129 0.84773 0.84859 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.78 37.16 0.36 -1.05 16 2 C -0.15 -1.62 5.37 -26.73 -0.14 -1.76 16 3 C 0.15 1.84 2.49 -68.86 -0.17 1.67 16 4 H 0.09 1.17 7.67 -51.93 -0.40 0.78 16 5 N -0.68 -9.65 5.14 -107.96 -0.56 -10.20 16 6 C 0.07 1.20 4.47 -3.83 -0.02 1.18 16 7 C -0.06 -1.11 0.60 -154.51 -0.09 -1.21 16 8 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 9 C -0.13 -2.38 7.88 37.16 0.29 -2.09 16 10 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 11 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 12 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.14 -1.61 4.69 -36.01 -0.17 -1.78 16 20 C -0.15 -1.70 9.23 -41.21 -0.38 -2.08 16 21 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 22 C -0.23 -2.38 11.23 29.04 0.33 -2.05 16 23 S 0.12 1.35 23.08 -107.50 -2.48 -1.13 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 27 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.34 4.69 6.75 -39.29 -0.27 4.42 16 30 H 0.03 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 32 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 33 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 37 H 0.03 0.54 6.71 -51.93 -0.35 0.19 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -29.07 350.28 -9.92 -39.00 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.29 Total: 1.40 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.59 Total: -24.83 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.18 Total: -36.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.48 Total: -1.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.07 -9.92 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds