Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 H 1.08997 * 109.46836 * 305.59774 * 3 2 1 5 5 N 1.46904 * 109.47039 * 185.60335 * 3 2 1 6 6 C 1.46895 * 111.00464 * 86.15602 * 5 3 2 7 7 C 1.52997 * 109.47241 * 174.41461 * 6 5 3 8 8 C 1.52997 * 109.47245 * 300.00545 * 7 6 5 9 9 C 1.53009 * 109.46841 * 60.00489 * 7 6 5 10 10 C 1.52999 * 109.47231 * 179.97438 * 7 6 5 11 11 C 1.50694 * 109.47315 * 180.02562 * 10 7 6 12 12 H 1.08006 * 120.00187 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00111 * 180.02562 * 11 10 7 14 14 N 1.31509 * 119.99994 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99775 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47348 * 59.99843 * 15 13 11 17 17 H 1.48506 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47466 * 299.99709 * 15 13 11 19 19 C 1.50693 * 109.47165 * 65.59913 * 3 2 1 20 20 C 1.33391 * 125.20678 * 260.00010 * 19 3 2 21 21 C 1.38417 * 114.92641 * 179.97438 * 20 19 3 22 22 C 1.33389 * 114.91907 * 359.97438 * 21 20 19 23 23 S 1.75884 * 109.59434 * 359.76299 * 22 21 20 24 24 H 1.08997 * 109.47400 * 63.66664 * 1 2 3 25 25 H 1.09005 * 109.47315 * 183.66505 * 1 2 3 26 26 H 1.09002 * 109.47150 * 303.66519 * 1 2 3 27 27 H 1.08998 * 109.46968 * 239.99866 * 2 1 3 28 28 H 1.09000 * 109.47277 * 119.99987 * 2 1 3 29 29 H 1.00902 * 110.99503 * 322.20063 * 5 3 2 30 30 H 1.08995 * 109.46972 * 294.42012 * 6 5 3 31 31 H 1.08997 * 109.46963 * 54.41529 * 6 5 3 32 32 H 1.08998 * 109.47662 * 59.99813 * 8 7 6 33 33 H 1.09001 * 109.46768 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47096 * 299.99467 * 8 7 6 35 35 H 1.08995 * 109.47288 * 59.99501 * 9 7 6 36 36 H 1.09004 * 109.46730 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46885 * 299.99464 * 9 7 6 38 38 H 1.09001 * 109.47430 * 300.00420 * 10 7 6 39 39 H 1.08997 * 109.46886 * 60.00120 * 10 7 6 40 40 H 0.97003 * 120.00069 * 179.97438 * 14 13 11 41 41 H 1.08004 * 122.53467 * 359.97438 * 20 19 3 42 42 H 1.07998 * 122.54055 * 180.02562 * 21 20 19 43 43 H 1.07995 * 125.20278 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5970 1.9844 -0.8356 5 7 3.5027 1.4448 -0.1352 6 6 3.9009 1.3982 -1.5484 7 6 5.4204 1.5422 -1.6552 8 6 5.8499 2.8792 -1.0480 9 6 6.0956 0.3974 -0.8971 10 6 5.8352 1.4931 -3.1270 11 6 7.3318 1.6342 -3.2322 12 1 7.9277 1.7472 -2.3385 13 6 7.9405 1.6191 -4.4692 14 7 7.2150 1.4810 -5.5574 15 14 9.7958 1.7934 -4.5994 16 1 10.4503 0.6816 -3.8639 17 1 10.1983 1.7470 -6.0281 18 1 10.2138 3.0907 -4.0098 19 6 1.6540 2.1118 1.2938 20 6 0.6195 2.9386 1.4533 21 6 0.4601 3.4330 2.7363 22 6 1.3650 3.0073 3.6190 23 16 2.4936 1.9153 2.8269 24 1 -0.3634 0.4558 -0.9210 25 1 -0.3634 -1.0256 0.0657 26 1 -0.3633 0.5697 0.8553 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9147 0.6826 0.3819 30 1 3.5949 0.4457 -1.9809 31 1 3.4199 2.2137 -2.0885 32 1 5.5545 2.9138 0.0006 33 1 6.9325 2.9815 -1.1237 34 1 5.3689 3.6948 -1.5880 35 1 5.7895 -0.5552 -1.3296 36 1 7.1781 0.5002 -0.9728 37 1 5.8002 0.4319 0.1515 38 1 5.5292 0.5403 -3.5592 39 1 5.3541 2.3083 -3.6674 40 1 7.6432 1.4707 -6.4277 41 1 -0.0436 3.2024 0.6426 42 1 -0.3369 4.1114 3.0026 43 1 1.3974 3.2873 4.6616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -7.844773 kcal Electronic energy + Delta-G solvation = -20145.124827 eV Core-core repulsion = 17315.296225 eV Total energy + Delta-G solvation = -2829.828603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82946 -38.59072 -36.77228 -34.56827 -32.74327 -30.45256 -28.95697 -27.88358 -27.35366 -25.79809 -24.29222 -23.93005 -22.12505 -20.25012 -19.43160 -18.31582 -17.97399 -16.63309 -16.56887 -16.25029 -15.76540 -15.44238 -15.15774 -14.83301 -14.36752 -14.10171 -13.89522 -13.67192 -13.48746 -13.34304 -13.17659 -12.93053 -12.74318 -12.70328 -12.61809 -12.44386 -12.23683 -12.18557 -12.08539 -11.92261 -11.81435 -11.43001 -11.36044 -10.85739 -10.75776 -10.48894 -9.52525 -9.27158 -9.20645 -8.13044 -6.19815 0.22488 0.86883 1.27973 1.41331 1.43444 1.50690 1.95249 2.44485 3.20889 3.21167 3.80911 3.94794 4.14721 4.20700 4.25752 4.33841 4.40204 4.49305 4.59382 4.72752 4.76324 4.80132 4.82449 4.88680 4.97054 5.08737 5.09237 5.16124 5.22475 5.23689 5.30229 5.35212 5.51634 5.53281 5.55238 5.59347 5.64564 5.70038 5.88388 5.93845 6.05832 6.38054 6.45272 6.95047 7.47372 8.99072 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028689 B = 0.003655 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.761906 B = 7658.812754 C = 8098.730694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C 0.154 3.846 4 H 0.087 0.913 5 N -0.677 5.677 6 C 0.086 3.914 7 C -0.053 4.053 8 C -0.106 4.106 9 C -0.121 4.121 10 C 0.041 3.959 11 C -0.515 4.515 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.937 5.937 15 Si 0.954 3.046 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.269 1.269 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.229 4.229 23 S 0.099 5.901 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.343 0.657 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.064 0.936 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 -0.272 17.890 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C 0.042 3.958 4 H 0.105 0.895 5 N -0.308 5.308 6 C -0.044 4.044 7 C -0.053 4.053 8 C -0.163 4.163 9 C -0.178 4.178 10 C 0.004 3.996 11 C -0.553 4.553 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.579 5.579 15 Si 0.780 3.220 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.271 4.271 20 C -0.185 4.185 21 C -0.170 4.170 22 C -0.365 4.365 23 S 0.362 5.638 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.004 0.996 39 H 0.002 0.998 40 H 0.068 0.932 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.300 -0.413 18.248 22.584 hybrid contribution -0.423 0.029 -1.495 1.554 sum -13.723 -0.383 16.753 21.660 Atomic orbital electron populations 1.21692 0.94076 1.02209 1.02229 1.22201 0.98174 0.95892 1.02157 1.20075 0.88093 0.94813 0.92770 0.89461 1.60556 1.07354 1.51599 1.11257 1.21825 0.95366 0.99024 0.88138 1.20470 0.93041 0.96128 0.95677 1.21484 0.99644 0.95353 0.99804 1.21670 1.00557 0.96756 0.98850 1.18989 0.95164 0.94012 0.91466 1.21595 0.93563 1.47886 0.92283 0.91722 1.25895 1.02694 0.95551 0.95826 1.70096 1.37225 1.52349 0.98219 0.85660 0.80457 0.79065 0.76837 1.19259 1.21329 1.19442 1.24489 1.00089 1.04433 0.98130 1.20273 0.99658 0.99754 0.98794 1.20349 1.01354 1.02870 0.92402 1.25919 1.00421 1.05410 1.04729 1.84313 1.32285 1.46246 1.00957 0.92498 0.92029 0.92156 0.91959 0.91510 0.83673 0.95749 0.92385 0.91627 0.94397 0.95286 0.94312 0.93576 0.91689 0.99632 0.99804 0.93173 0.83799 0.82618 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.78 71.98 0.70 -1.81 16 2 C -0.14 -2.96 5.37 30.59 0.16 -2.80 16 3 C 0.15 3.60 2.49 44.17 0.11 3.71 16 4 H 0.09 2.14 7.67 -2.39 -0.02 2.12 16 5 N -0.68 -18.47 5.14 -495.48 -2.55 -21.02 16 6 C 0.09 2.87 4.47 86.30 0.39 3.25 16 7 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 8 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 9 C -0.12 -4.38 7.88 71.99 0.57 -3.82 16 10 C 0.04 2.14 4.04 29.85 0.12 2.26 16 11 C -0.52 -28.65 7.65 25.60 0.20 -28.45 16 12 H 0.06 3.45 5.68 -2.91 -0.02 3.44 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 14 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 15 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.15 -3.40 4.69 24.59 0.12 -3.28 16 20 C -0.15 -3.08 9.23 21.22 0.20 -2.89 16 21 C -0.14 -2.46 10.18 21.21 0.22 -2.25 16 22 C -0.23 -4.08 11.23 66.72 0.75 -3.33 16 23 S 0.10 2.07 23.08 -56.49 -1.30 0.76 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.06 1.04 6.67 -2.39 -0.02 1.03 16 27 H 0.06 1.38 7.52 -2.39 -0.02 1.36 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.34 8.90 6.75 -89.69 -0.61 8.30 16 30 H 0.02 0.82 7.56 -2.39 -0.02 0.80 16 31 H 0.06 2.05 7.91 -2.39 -0.02 2.03 16 32 H 0.06 2.25 7.60 -2.39 -0.02 2.23 16 33 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 37 H 0.06 1.94 6.71 -2.39 -0.02 1.92 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -62.70 350.28 3.36 -59.34 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.37 Total: 16.19 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 4.54 Total: -44.75 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.26 Total: -78.22 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.30 Total: 0.76 kcal Total: -62.70 3.36 -59.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.494 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds