Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00118 * 2 1 4 4 C 1.53005 * 109.46837 * 270.00178 * 3 2 1 5 5 C 1.50700 * 109.46400 * 180.02562 * 4 3 2 6 6 H 1.07992 * 120.00668 * 0.02562 * 5 4 3 7 7 C 1.37888 * 119.99591 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47294 * 90.00409 * 9 7 5 11 11 H 1.48499 * 109.47203 * 210.00357 * 9 7 5 12 12 H 1.48499 * 109.47361 * 330.00210 * 9 7 5 13 13 C 1.39565 * 119.99692 * 180.02562 * 2 1 3 14 14 C 1.39020 * 119.95742 * 359.97438 * 13 2 1 15 15 C 1.37852 * 120.05169 * 179.97438 * 14 13 2 16 16 C 1.39412 * 119.94936 * 0.02562 * 15 14 13 17 17 C 1.48336 * 120.04393 * 179.97438 * 16 15 14 18 18 C 1.39363 * 120.12586 * 179.97438 * 17 16 15 19 19 C 1.38008 * 119.88102 * 180.02562 * 18 17 16 20 20 C 1.38333 * 120.12036 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.24636 * 0.28023 * 20 19 18 22 22 C 1.38008 * 120.12754 * 359.48376 * 21 20 19 23 23 C 1.39401 * 119.90865 * 0.25045 * 16 15 14 24 24 C 1.37856 * 119.95119 * 359.46981 * 23 16 15 25 25 H 1.09006 * 109.47140 * 270.00133 * 1 2 3 26 26 H 1.09002 * 109.47135 * 29.99399 * 1 2 3 27 27 H 1.09001 * 109.47550 * 150.00155 * 1 2 3 28 28 H 1.08992 * 109.47253 * 30.00375 * 3 2 1 29 29 H 1.08998 * 109.46731 * 150.00648 * 3 2 1 30 30 H 1.08993 * 109.47491 * 299.99596 * 4 3 2 31 31 H 1.08998 * 109.47077 * 60.00681 * 4 3 2 32 32 H 0.97002 * 120.00023 * 179.97438 * 8 7 5 33 33 H 1.08006 * 119.97298 * 359.97438 * 14 13 2 34 34 H 1.07995 * 120.02433 * 179.97438 * 15 14 13 35 35 H 1.08007 * 120.05897 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.94411 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.87185 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.93431 * 179.74860 * 21 20 19 39 39 H 1.08001 * 120.06674 * 180.24191 * 22 21 20 40 40 H 1.08003 * 120.02365 * 179.72699 * 23 16 15 41 41 H 1.08001 * 119.97531 * 180.26987 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7103 -1.4426 5 6 3.2065 3.0151 -1.4425 6 1 3.4772 3.4823 -0.5072 7 6 3.5518 3.6119 -2.6366 8 7 3.2226 3.0427 -3.7755 9 14 4.4871 5.2288 -2.6365 10 1 5.9469 4.9563 -2.6366 11 1 4.1290 6.0078 -3.8490 12 1 4.1290 6.0078 -1.4240 13 6 2.1627 -1.2087 -0.0005 14 6 1.4667 -2.4121 -0.0005 15 6 2.1539 -3.6071 -0.0016 16 6 3.5480 -3.6082 -0.0021 17 6 4.2896 -4.8929 -0.0027 18 6 5.6833 -4.8960 -0.0038 19 6 6.3681 -6.0942 -0.0049 20 6 5.6738 -7.2906 -0.0043 21 6 4.2906 -7.2935 -0.0086 22 6 3.5954 -6.1014 -0.0026 23 6 4.2441 -2.4005 0.0037 24 6 3.5529 -1.2077 -0.0011 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1382 0.5137 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 3.4651 3.4627 -4.6156 33 1 0.3866 -2.4107 0.0003 34 1 1.6127 -4.5417 -0.0012 35 1 6.2264 -3.9624 -0.0046 36 1 7.4481 -6.0978 -0.0061 37 1 6.2138 -8.2260 -0.0056 38 1 3.7536 -8.2306 -0.0122 39 1 2.5154 -6.1048 -0.0020 40 1 5.3241 -2.3992 0.0077 41 1 4.0918 -0.2717 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258891215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = 49.169800 kcal Electronic energy + Delta-G solvation = -20456.917868 eV Core-core repulsion = 17494.117652 eV Total energy + Delta-G solvation = -2962.800216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75577 -38.58292 -36.10521 -33.25158 -31.86998 -31.41260 -30.63093 -29.68288 -28.21402 -26.15783 -24.35594 -23.18397 -22.43094 -21.30110 -20.80584 -19.69013 -17.70533 -16.61790 -16.26033 -15.73686 -15.38213 -14.63764 -14.41878 -14.18200 -14.03987 -13.92991 -13.69564 -13.22240 -13.09381 -12.91863 -12.43246 -12.27934 -12.08829 -11.87749 -11.67368 -11.40740 -11.13337 -10.96957 -10.89916 -10.75979 -10.33069 -10.17242 -9.90987 -9.57146 -9.24189 -8.93411 -8.61985 -8.42905 -8.41338 -6.62272 -6.06234 -4.11019 0.98981 1.42770 1.81027 2.26737 3.27825 3.34303 3.36648 3.64496 3.81547 4.39102 4.41363 4.81643 4.85110 4.95767 5.07272 5.21496 5.28453 5.29292 5.44892 5.47757 5.49261 5.66792 5.73697 5.85287 5.90913 5.97787 6.02822 6.06900 6.11898 6.35481 6.37606 6.41544 6.50690 6.53639 6.70437 6.75885 6.77678 7.03394 7.06751 7.17989 7.53637 7.60773 7.73627 7.96167 8.01970 8.31819 8.96312 9.53731 11.04374 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.003443 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.433606 B = 8130.781525 C = 9114.571177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.121 3.879 4 C 0.010 3.990 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.240 3.760 14 C -0.212 4.212 15 C -0.057 4.057 16 C -0.136 4.136 17 C -0.010 4.010 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.139 4.139 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.054 4.054 24 C -0.192 4.192 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -16.937 8.705 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.328 5.328 3 C -0.001 4.001 4 C -0.029 4.029 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.134 3.866 14 C -0.234 4.234 15 C -0.075 4.075 16 C -0.138 4.138 17 C -0.010 4.010 18 C -0.144 4.144 19 C -0.133 4.133 20 C -0.157 4.157 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.073 4.073 24 C -0.215 4.215 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.521 -16.674 8.520 18.732 hybrid contribution 0.474 0.958 -0.274 1.103 sum -0.047 -15.716 8.246 17.748 Atomic orbital electron populations 1.21594 0.80475 1.02657 1.00343 1.46932 1.04869 1.03973 1.77013 1.21888 0.95163 0.81947 1.01062 1.19453 0.97200 0.96223 0.89975 1.21108 1.36475 1.06422 0.92446 0.92550 1.25008 0.95930 0.97671 0.95600 1.69975 1.46436 1.39224 0.97322 0.86578 0.80211 0.83571 0.77551 1.20558 1.21194 1.19838 1.18020 0.91440 0.85953 0.91219 1.20545 0.99382 0.91051 1.12461 1.20813 0.93017 0.97015 0.96702 1.18378 0.92848 0.91548 1.11028 1.18842 0.92852 0.92391 0.96960 1.21262 0.93619 0.98247 1.01229 1.21055 0.99675 0.92488 1.00036 1.21091 0.94400 0.97838 1.02414 1.21028 0.94367 0.97715 1.00281 1.21203 0.99848 0.91785 1.01702 1.20918 0.99153 0.91134 0.96056 1.20796 0.92421 0.98890 1.09346 0.93915 0.91193 0.91889 0.91940 0.91649 0.96049 0.96534 0.92889 0.86204 0.86492 0.85804 0.86294 0.86568 0.86391 0.86022 0.86238 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.18 59.85 0.61 1.95 16 2 N -0.62 -11.07 3.00 -179.59 -0.54 -11.61 16 3 C 0.12 2.42 5.09 -4.04 -0.02 2.40 16 4 C 0.01 0.24 5.30 -27.88 -0.15 0.09 16 5 C -0.53 -14.42 9.11 -34.44 -0.31 -14.74 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 13 C 0.24 4.19 6.55 -83.76 -0.55 3.64 16 14 C -0.21 -3.22 9.19 -39.43 -0.36 -3.59 16 15 C -0.06 -0.81 9.42 -39.29 -0.37 -1.18 16 16 C -0.14 -2.02 5.88 -104.87 -0.62 -2.64 16 17 C -0.01 -0.14 5.88 -104.90 -0.62 -0.76 16 18 C -0.13 -1.57 9.43 -39.25 -0.37 -1.94 16 19 C -0.11 -1.25 10.03 -39.63 -0.40 -1.64 16 20 C -0.14 -1.43 10.04 -39.52 -0.40 -1.82 16 21 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 22 C -0.13 -1.51 9.43 -39.25 -0.37 -1.88 16 23 C -0.05 -0.84 9.42 -39.29 -0.37 -1.21 16 24 C -0.19 -3.38 9.19 -39.43 -0.36 -3.74 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 27 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 28 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.07 1.28 6.18 -51.93 -0.32 0.96 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.59 6.12 -52.48 -0.32 1.26 16 34 H 0.12 1.35 6.20 -52.49 -0.33 1.03 16 35 H 0.12 1.42 6.20 -52.48 -0.33 1.09 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.12 1.25 6.20 -52.49 -0.33 0.93 16 40 H 0.12 1.63 6.20 -52.48 -0.33 1.30 16 41 H 0.13 2.43 6.12 -52.49 -0.32 2.11 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -30.69 336.98 -10.40 -41.09 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.50 Total: 2.10 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -5.15 Total: -27.08 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.20 Total: -37.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.69 -10.40 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258891215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.260 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds