Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47330 * 2 1 4 4 C 1.52998 * 109.47038 * 239.99434 * 2 1 3 5 5 C 1.50707 * 109.46881 * 120.00155 * 2 1 3 6 6 C 1.38323 * 119.87922 * 59.99538 * 5 2 1 7 7 C 1.38010 * 120.12058 * 179.97438 * 6 5 2 8 8 C 1.39345 * 119.87903 * 0.02562 * 7 6 5 9 9 C 1.48365 * 120.12425 * 180.02562 * 8 7 6 10 10 C 1.38900 * 119.61840 * 179.97438 * 9 8 7 11 11 C 1.40839 * 118.76741 * 179.97438 * 10 9 8 12 12 C 1.41522 * 120.98800 * 180.27279 * 11 10 9 13 13 H 1.08004 * 120.00063 * 150.07754 * 12 11 10 14 14 C 1.40048 * 120.00224 * 330.08505 * 12 11 10 15 15 N 1.30732 * 120.00166 * 162.10454 * 14 12 11 16 16 Si 1.86799 * 119.99725 * 342.09905 * 14 12 11 17 17 H 1.48501 * 109.46763 * 95.41013 * 16 14 12 18 18 H 1.48500 * 109.47045 * 215.41090 * 16 14 12 19 19 H 1.48499 * 109.47011 * 335.41296 * 16 14 12 20 20 C 1.41139 * 118.02694 * 0.02562 * 11 10 9 21 21 C 1.37746 * 119.07268 * 359.97438 * 20 11 10 22 22 N 1.31928 * 121.15457 * 359.97438 * 21 20 11 23 23 C 1.39354 * 119.75829 * 0.27222 * 8 7 6 24 24 C 1.38019 * 119.87108 * 359.45067 * 23 8 7 25 25 H 1.09008 * 109.47228 * 300.00511 * 1 2 3 26 26 H 1.09007 * 109.47120 * 60.00004 * 1 2 3 27 27 H 1.08995 * 109.47964 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47241 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47128 * 299.99530 * 3 2 1 30 30 H 1.09000 * 109.47070 * 60.00152 * 3 2 1 31 31 H 1.08994 * 109.47569 * 300.00631 * 4 2 1 32 32 H 1.09005 * 109.47083 * 60.00676 * 4 2 1 33 33 H 1.09001 * 109.47399 * 180.02562 * 4 2 1 34 34 H 1.08004 * 119.93541 * 0.02562 * 6 5 2 35 35 H 1.08004 * 120.05890 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.61185 * 0.02562 * 10 9 8 37 37 H 0.96997 * 120.00221 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.46737 * 179.97438 * 20 11 10 39 39 H 1.07999 * 119.42699 * 180.02562 * 21 20 11 40 40 H 1.07993 * 120.06680 * 179.72475 * 23 8 7 41 41 H 1.07998 * 119.94017 * 180.25706 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.6965 -2.0348 1.4469 7 6 2.1541 -2.6904 2.5718 8 6 2.9554 -2.0157 3.4907 9 6 3.4509 -2.7154 4.7015 10 6 4.2495 -2.0329 5.6103 11 6 4.7094 -2.7143 6.7538 12 6 5.5208 -2.0628 7.7131 13 1 5.4783 -2.3629 8.7497 14 6 6.3789 -1.0288 7.3182 15 7 6.8584 -0.2010 8.2092 16 14 6.8384 -0.8326 5.5182 17 1 5.9374 0.1625 4.8831 18 1 8.2440 -0.3650 5.4143 19 1 6.6988 -2.1392 4.8265 20 6 4.3328 -4.0646 6.9175 21 6 3.5373 -4.6581 5.9624 22 7 3.1249 -3.9866 4.9043 23 6 3.2855 -0.6798 3.2708 24 6 2.8270 -0.0356 2.1395 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1299 -0.7218 -1.2490 34 1 1.0756 -2.5568 0.7338 35 1 1.8917 -3.7245 2.7396 36 1 4.5120 -0.9986 5.4434 37 1 7.4524 0.5154 7.9357 38 1 4.6636 -4.6248 7.7796 39 1 3.2453 -5.6909 6.0821 40 1 3.9026 -0.1508 3.9819 41 1 3.0856 0.9985 1.9659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259214403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = 14.535999 kcal Electronic energy + Delta-G solvation = -21163.995369 eV Core-core repulsion = 18199.693319 eV Total energy + Delta-G solvation = -2964.302051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10923 -40.09637 -37.26646 -35.97620 -33.41182 -32.88391 -32.01430 -29.54118 -28.27857 -28.04526 -27.80893 -24.87996 -24.11762 -22.64611 -22.06667 -20.12139 -19.60955 -18.11790 -17.24565 -16.84945 -16.50163 -16.07877 -15.57951 -15.33181 -15.15537 -14.89471 -14.83526 -14.70920 -14.49355 -14.20863 -13.69651 -13.46974 -13.19882 -12.89760 -12.83248 -12.72933 -12.71463 -12.50449 -12.48312 -12.22809 -11.83262 -11.77363 -11.53112 -11.36465 -11.29936 -10.39925 -10.16656 -10.01390 -9.85625 -9.05753 -8.92443 -6.76954 -0.17070 0.49812 0.69401 0.97654 1.16735 1.32705 1.37626 2.00433 2.50795 2.89705 3.45432 3.52823 3.67602 3.82332 4.05949 4.12074 4.16113 4.24148 4.36699 4.43941 4.56126 4.58463 4.67386 4.71837 4.84038 4.87006 4.94072 4.94701 5.02357 5.05143 5.07673 5.09643 5.16239 5.22457 5.27171 5.34029 5.39843 5.49423 5.54345 5.65118 5.71765 5.77184 6.02176 6.07257 6.20182 6.46665 6.62883 7.46166 8.01868 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020504 B = 0.004939 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.252911 B = 5668.029811 C = 6663.669630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.065 4.065 6 C -0.117 4.117 7 C -0.089 4.089 8 C -0.065 4.065 9 C 0.167 3.833 10 C -0.285 4.285 11 C 0.094 3.906 12 C -0.475 4.475 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.828 5.828 16 Si 0.951 3.049 17 H -0.250 1.250 18 H -0.267 1.267 19 H -0.267 1.267 20 C -0.272 4.272 21 C 0.114 3.886 22 N -0.565 5.565 23 C -0.123 4.123 24 C -0.126 4.126 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.299 0.701 38 H 0.123 0.877 39 H 0.171 0.829 40 H 0.108 0.892 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 2.611 -18.206 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.194 4.194 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.108 4.108 8 C -0.066 4.066 9 C 0.034 3.966 10 C -0.307 4.307 11 C 0.086 3.914 12 C -0.506 4.506 13 H 0.088 0.912 14 C -0.158 4.158 15 N -0.454 5.454 16 Si 0.775 3.225 17 H -0.175 1.175 18 H -0.192 1.192 19 H -0.191 1.191 20 C -0.294 4.294 21 C -0.039 4.039 22 N -0.280 5.280 23 C -0.142 4.142 24 C -0.144 4.144 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.188 0.812 40 H 0.126 0.874 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.147 2.380 -18.662 20.918 hybrid contribution 1.271 0.482 1.213 1.822 sum -7.875 2.862 -17.449 19.356 Atomic orbital electron populations 1.21887 0.92715 1.02474 1.02303 1.19573 0.96385 0.95256 0.91584 1.21987 1.01154 0.94547 1.02621 1.21890 1.00836 1.00526 0.96159 1.20219 0.96141 0.93948 0.96182 1.21163 1.00617 0.94541 0.97130 1.21330 0.95700 1.00376 0.93368 1.18819 0.99896 0.93830 0.94020 1.19699 0.93369 0.90531 0.92987 1.22001 1.08038 1.00364 1.00278 1.18100 0.90136 0.92143 0.91053 1.19513 1.20713 1.14406 0.95951 0.91233 1.26676 0.93770 0.92072 1.03238 1.69638 1.25256 1.11939 1.38525 0.85712 0.78124 0.80329 0.78374 1.17483 1.19232 1.19139 1.22228 1.08431 0.95059 1.03677 1.22596 0.92680 0.99676 0.88964 1.67492 1.28492 1.08003 1.23991 1.21387 1.00299 0.93896 0.98609 1.21274 0.98699 1.00971 0.93422 0.93269 0.90602 0.92132 0.92551 0.90666 0.92508 0.92132 0.90585 0.93304 0.83441 0.85264 0.87268 0.88986 0.85939 0.81228 0.87366 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.28 71.98 0.60 -1.49 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.54 16 3 C -0.15 -2.31 7.13 71.98 0.51 -1.80 16 4 C -0.14 -2.10 8.29 71.98 0.60 -1.50 16 5 C -0.06 -1.61 4.77 -19.82 -0.09 -1.70 16 6 C -0.12 -3.09 8.69 22.24 0.19 -2.89 16 7 C -0.09 -3.02 9.57 22.48 0.22 -2.81 16 8 C -0.06 -2.61 5.88 -20.05 -0.12 -2.72 16 9 C 0.17 7.83 6.73 41.86 0.28 8.11 16 10 C -0.28 -14.31 6.63 23.07 0.15 -14.16 16 11 C 0.09 4.91 5.12 -21.12 -0.11 4.80 16 12 C -0.48 -26.57 9.63 23.52 0.23 -26.35 16 13 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 14 C 0.06 3.22 5.43 85.30 0.46 3.68 16 15 N -0.83 -44.21 13.92 21.84 0.30 -43.90 16 16 Si 0.95 43.04 24.55 68.60 1.68 44.73 16 17 H -0.25 -10.56 6.20 99.48 0.62 -9.94 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.27 -12.94 6.85 99.48 0.68 -12.26 16 20 C -0.27 -12.74 9.90 22.87 0.23 -12.51 16 21 C 0.11 4.84 11.15 84.56 0.94 5.78 16 22 N -0.57 -25.53 9.40 -185.36 -1.74 -27.27 16 23 C -0.12 -4.53 9.41 22.49 0.21 -4.32 16 24 C -0.13 -3.64 8.96 22.24 0.20 -3.45 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.06 0.89 7.38 -2.39 -0.02 0.88 16 28 H 0.06 0.93 7.51 -2.38 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16 31 H 0.06 0.90 7.38 -2.39 -0.02 0.88 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.15 2.98 7.08 -2.91 -0.02 2.96 16 35 H 0.13 4.38 7.53 -2.91 -0.02 4.36 16 36 H 0.11 5.40 2.98 -2.91 -0.01 5.39 16 37 H 0.30 14.22 8.29 -92.71 -0.77 13.45 16 38 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 39 H 0.17 5.67 8.06 -2.91 -0.02 5.64 16 40 H 0.11 4.23 5.65 -2.91 -0.02 4.22 16 41 H 0.15 3.48 5.87 -2.91 -0.02 3.46 16 Total: -1.00 -61.84 326.50 5.61 -56.23 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.91 Total: 24.08 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 4.45 Total: -53.86 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.44 Total: -71.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.68 Total: 44.73 kcal Total: -61.84 5.61 -56.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259214403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.763 kcal (2) G-P(sol) polarization free energy of solvation -61.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds