Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47205 * 240.00125 * 2 1 3 5 5 C 1.50703 * 109.47346 * 120.00007 * 2 1 3 6 6 C 1.38335 * 119.86935 * 60.00205 * 5 2 1 7 7 C 1.38007 * 120.12365 * 179.97438 * 6 5 2 8 8 C 1.39388 * 119.87340 * 0.02562 * 7 6 5 9 9 C 1.48303 * 120.12344 * 179.97438 * 8 7 6 10 10 C 1.39904 * 119.60669 * 193.71824 * 9 8 7 11 11 C 1.38692 * 119.46677 * 180.02562 * 10 9 8 12 12 C 1.38291 * 118.68887 * 0.02562 * 11 10 9 13 13 C 1.40691 * 119.18339 * 359.97438 * 12 11 10 14 14 C 1.41385 * 119.76147 * 180.27947 * 13 12 11 15 15 H 1.07993 * 120.00072 * 351.73661 * 14 13 12 16 16 C 1.40015 * 119.99511 * 171.73596 * 14 13 12 17 17 N 1.30747 * 120.00059 * 168.40677 * 16 14 13 18 18 Si 1.86799 * 120.00215 * 348.40931 * 16 14 13 19 19 H 1.48500 * 109.47272 * 85.28721 * 18 16 14 20 20 H 1.48503 * 109.47046 * 205.28873 * 18 16 14 21 21 H 1.48507 * 109.47015 * 325.28673 * 18 16 14 22 22 N 1.32216 * 119.60957 * 13.74156 * 9 8 7 23 23 C 1.39387 * 119.74824 * 0.24914 * 8 7 6 24 24 C 1.38010 * 119.87200 * 359.49572 * 23 8 7 25 25 H 1.09002 * 109.47164 * 299.99708 * 1 2 3 26 26 H 1.08999 * 109.47150 * 59.99649 * 1 2 3 27 27 H 1.09003 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47345 * 300.00232 * 3 2 1 30 30 H 1.09002 * 109.46814 * 60.00077 * 3 2 1 31 31 H 1.08999 * 109.47283 * 299.99719 * 4 2 1 32 32 H 1.08999 * 109.46882 * 60.00062 * 4 2 1 33 33 H 1.09005 * 109.47136 * 179.97438 * 4 2 1 34 34 H 1.07998 * 119.94025 * 359.97438 * 6 5 2 35 35 H 1.07997 * 120.06437 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.26877 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.65673 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.40754 * 180.02562 * 12 11 10 39 39 H 0.96991 * 120.00455 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.06281 * 179.72808 * 23 8 7 41 41 H 1.08002 * 119.93605 * 180.25170 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6966 -2.0349 1.4467 7 6 2.1542 -2.6907 2.5714 8 6 2.9557 -2.0158 3.4907 9 6 3.4500 -2.7150 4.7015 10 6 4.0019 -1.9729 5.7513 11 6 4.4638 -2.6298 6.8821 12 6 4.3640 -4.0080 6.9365 13 6 3.7992 -4.6984 5.8485 14 6 3.6857 -6.1069 5.8936 15 1 4.1497 -6.6606 6.6964 16 6 2.9718 -6.7840 4.8974 17 7 3.0525 -8.0857 4.8054 18 14 1.9041 -5.8274 3.6997 19 1 2.7374 -5.3473 2.5683 20 1 0.8279 -6.7102 3.1822 21 1 1.2981 -4.6645 4.3967 22 7 3.3644 -4.0323 4.7760 23 6 3.2860 -0.6797 3.2705 24 6 2.8271 -0.0355 2.1395 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.0752 -2.5566 0.7340 35 1 1.8918 -3.7248 2.7391 36 1 4.0685 -0.8972 5.6814 37 1 4.8930 -2.0759 7.7040 38 1 4.7146 -4.5477 7.8038 39 1 2.5582 -8.5547 4.1152 40 1 3.9031 -0.1506 3.9816 41 1 3.0858 0.9986 1.9658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259317009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = 30.647177 kcal Electronic energy + Delta-G solvation = -21341.773710 eV Core-core repulsion = 18378.170292 eV Total energy + Delta-G solvation = -2963.603418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78647 -38.53103 -36.17970 -33.72055 -31.58755 -31.40831 -30.66077 -28.58701 -27.42368 -27.31169 -25.74382 -23.50797 -22.40869 -21.11623 -20.61978 -19.09302 -17.69682 -16.92042 -15.45970 -15.29537 -15.04679 -14.67885 -14.32949 -14.12045 -13.92610 -13.64474 -13.29834 -13.10443 -12.96301 -12.57454 -12.50895 -12.03541 -11.89597 -11.79194 -11.75009 -11.55296 -11.23691 -11.02003 -10.81649 -10.78537 -10.51203 -10.39420 -10.32727 -9.88785 -9.43916 -8.83871 -8.56961 -8.50864 -7.74588 -7.44707 -6.95318 -4.74014 1.32117 1.77475 2.56563 2.72614 3.35180 3.44595 3.56144 4.10035 4.31167 4.59235 4.59564 4.72975 4.94348 5.07297 5.25172 5.29629 5.33750 5.46968 5.53109 5.54904 5.67496 5.71847 5.75319 5.79213 5.82529 5.91676 5.95679 5.98821 6.19164 6.20720 6.23608 6.25710 6.35530 6.50402 6.52157 6.64584 6.87410 6.92632 7.01344 7.13127 7.27560 7.35093 7.47523 7.79586 8.07930 8.47936 8.53739 9.46680 9.96307 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.005342 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.259349 B = 5240.660374 C = 6375.259721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.098 4.098 8 C -0.030 4.030 9 C 0.200 3.800 10 C -0.296 4.296 11 C -0.049 4.049 12 C -0.254 4.254 13 C 0.247 3.753 14 C -0.410 4.410 15 H 0.097 0.903 16 C 0.081 3.919 17 N -0.797 5.797 18 Si 0.994 3.006 19 H -0.270 1.270 20 H -0.331 1.331 21 H -0.259 1.259 22 N -0.561 5.561 23 C -0.102 4.102 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.289 0.711 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 14.530 -9.022 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.141 4.141 7 C -0.117 4.117 8 C -0.030 4.030 9 C 0.060 3.940 10 C -0.319 4.319 11 C -0.073 4.073 12 C -0.276 4.276 13 C 0.123 3.877 14 C -0.441 4.441 15 H 0.115 0.885 16 C -0.142 4.142 17 N -0.420 5.420 18 Si 0.830 3.170 19 H -0.197 1.197 20 H -0.264 1.264 21 H -0.186 1.186 22 N -0.279 5.279 23 C -0.121 4.121 24 C -0.146 4.146 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.664 13.730 -9.686 17.197 hybrid contribution 0.080 0.576 0.374 0.691 sum -3.583 14.306 -9.312 17.442 Atomic orbital electron populations 1.21888 0.93914 1.02137 1.01591 1.19470 0.95555 0.94887 0.92913 1.21949 1.01217 0.95106 1.01660 1.21892 1.01323 1.00325 0.96028 1.19764 0.98202 0.94015 0.95797 1.20883 1.01144 0.94297 0.97750 1.21788 0.96024 1.00767 0.93096 1.18814 0.97290 0.93057 0.93877 1.19353 0.93457 0.89675 0.91509 1.21084 1.14797 0.98659 0.97347 1.20900 0.95847 0.94351 0.96159 1.21665 1.11376 0.93906 1.00676 1.18514 0.88647 0.93591 0.86910 1.19535 1.27001 0.88926 1.08629 0.88528 1.26438 0.95350 0.95020 0.97402 1.69627 1.32932 1.09627 1.29815 0.84884 0.76996 0.76101 0.78971 1.19727 1.26434 1.18593 1.66621 1.26399 1.07640 1.27280 1.21222 0.99792 0.93711 0.97353 1.20981 0.99231 0.99853 0.94513 0.92488 0.92615 0.92371 0.92259 0.92661 0.92274 0.92358 0.92616 0.92471 0.86462 0.85205 0.87625 0.87689 0.87343 0.90065 0.85677 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.28 37.15 0.31 -1.08 16 2 C -0.03 -0.31 0.85 -155.66 -0.13 -0.44 16 3 C -0.14 -1.31 7.13 37.16 0.26 -1.05 16 4 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 5 C -0.08 -1.10 4.77 -104.55 -0.50 -1.60 16 6 C -0.12 -2.02 8.69 -39.63 -0.34 -2.36 16 7 C -0.10 -1.99 9.56 -39.24 -0.38 -2.37 16 8 C -0.03 -0.61 5.86 -104.90 -0.61 -1.22 16 9 C 0.20 4.67 6.69 -82.94 -0.55 4.11 16 10 C -0.30 -6.22 9.44 -38.79 -0.37 -6.59 16 11 C -0.05 -1.02 10.15 -39.39 -0.40 -1.42 16 12 C -0.25 -5.93 9.83 -38.64 -0.38 -6.31 16 13 C 0.25 6.50 6.32 -85.01 -0.54 5.96 16 14 C -0.41 -11.29 9.68 -37.72 -0.37 -11.66 16 15 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.08 2.19 5.52 -17.35 -0.10 2.09 16 17 N -0.80 -21.53 13.92 55.55 0.77 -20.76 16 18 Si 0.99 24.54 22.26 -169.99 -3.78 20.75 16 19 H -0.27 -6.66 6.55 56.52 0.37 -6.29 16 20 H -0.33 -7.87 7.11 56.52 0.40 -7.47 16 21 H -0.26 -6.60 6.28 56.52 0.36 -6.24 16 22 N -0.56 -14.55 4.38 -7.68 -0.03 -14.59 16 23 C -0.10 -1.70 9.38 -39.24 -0.37 -2.07 16 24 C -0.13 -1.83 8.96 -39.63 -0.36 -2.18 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 7.38 -51.93 -0.38 0.22 16 28 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 31 H 0.06 0.62 7.38 -51.93 -0.38 0.23 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.12 1.68 7.08 -52.49 -0.37 1.31 16 35 H 0.13 2.89 2.42 -52.49 -0.13 2.76 16 36 H 0.11 1.89 6.39 -52.48 -0.34 1.56 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 39 H 0.29 7.11 8.29 -40.82 -0.34 6.78 16 40 H 0.13 1.87 6.38 -52.49 -0.33 1.53 16 41 H 0.12 1.42 5.87 -52.49 -0.31 1.11 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -28.91 320.98 -8.33 -37.24 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.62 Total: 1.80 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -4.51 Total: -29.29 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.74 Total: -35.34 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -3.78 Total: 20.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.91 -8.33 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.887 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds