Wall clock time and date at job start Tue Mar 31 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47205 * 240.00125 * 2 1 3 5 5 C 1.50703 * 109.47346 * 120.00007 * 2 1 3 6 6 C 1.38335 * 119.86935 * 60.00205 * 5 2 1 7 7 C 1.38007 * 120.12365 * 179.97438 * 6 5 2 8 8 C 1.39388 * 119.87340 * 0.02562 * 7 6 5 9 9 C 1.48303 * 120.12344 * 179.97438 * 8 7 6 10 10 C 1.39904 * 119.60669 * 193.71824 * 9 8 7 11 11 C 1.38692 * 119.46677 * 180.02562 * 10 9 8 12 12 C 1.38291 * 118.68887 * 0.02562 * 11 10 9 13 13 C 1.40691 * 119.18339 * 359.97438 * 12 11 10 14 14 C 1.41385 * 119.76147 * 180.27947 * 13 12 11 15 15 H 1.07993 * 120.00072 * 351.73661 * 14 13 12 16 16 C 1.40015 * 119.99511 * 171.73596 * 14 13 12 17 17 N 1.30747 * 120.00059 * 168.40677 * 16 14 13 18 18 Si 1.86799 * 120.00215 * 348.40931 * 16 14 13 19 19 H 1.48500 * 109.47272 * 85.28721 * 18 16 14 20 20 H 1.48503 * 109.47046 * 205.28873 * 18 16 14 21 21 H 1.48507 * 109.47015 * 325.28673 * 18 16 14 22 22 N 1.32216 * 119.60957 * 13.74156 * 9 8 7 23 23 C 1.39387 * 119.74824 * 0.24914 * 8 7 6 24 24 C 1.38010 * 119.87200 * 359.49572 * 23 8 7 25 25 H 1.09002 * 109.47164 * 299.99708 * 1 2 3 26 26 H 1.08999 * 109.47150 * 59.99649 * 1 2 3 27 27 H 1.09003 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47345 * 300.00232 * 3 2 1 30 30 H 1.09002 * 109.46814 * 60.00077 * 3 2 1 31 31 H 1.08999 * 109.47283 * 299.99719 * 4 2 1 32 32 H 1.08999 * 109.46882 * 60.00062 * 4 2 1 33 33 H 1.09005 * 109.47136 * 179.97438 * 4 2 1 34 34 H 1.07998 * 119.94025 * 359.97438 * 6 5 2 35 35 H 1.07997 * 120.06437 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.26877 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.65673 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.40754 * 180.02562 * 12 11 10 39 39 H 0.96991 * 120.00455 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.06281 * 179.72808 * 23 8 7 41 41 H 1.08002 * 119.93605 * 180.25170 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6966 -2.0349 1.4467 7 6 2.1542 -2.6907 2.5714 8 6 2.9557 -2.0158 3.4907 9 6 3.4500 -2.7150 4.7015 10 6 4.0019 -1.9729 5.7513 11 6 4.4638 -2.6298 6.8821 12 6 4.3640 -4.0080 6.9365 13 6 3.7992 -4.6984 5.8485 14 6 3.6857 -6.1069 5.8936 15 1 4.1497 -6.6606 6.6964 16 6 2.9718 -6.7840 4.8974 17 7 3.0525 -8.0857 4.8054 18 14 1.9041 -5.8274 3.6997 19 1 2.7374 -5.3473 2.5683 20 1 0.8279 -6.7102 3.1822 21 1 1.2981 -4.6645 4.3967 22 7 3.3644 -4.0323 4.7760 23 6 3.2860 -0.6797 3.2705 24 6 2.8271 -0.0355 2.1395 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.0752 -2.5566 0.7340 35 1 1.8918 -3.7248 2.7391 36 1 4.0685 -0.8972 5.6814 37 1 4.8930 -2.0759 7.7040 38 1 4.7146 -4.5477 7.8038 39 1 2.5582 -8.5547 4.1152 40 1 3.9031 -0.1506 3.9816 41 1 3.0858 0.9986 1.9658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259317009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:47 Heat of formation + Delta-G solvation = 16.126832 kcal Electronic energy + Delta-G solvation = -21342.403359 eV Core-core repulsion = 18378.170292 eV Total energy + Delta-G solvation = -2964.233067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13366 -40.12870 -37.32437 -35.64555 -33.22597 -33.09823 -32.03022 -30.10543 -28.23028 -28.08444 -27.56715 -24.97483 -23.93318 -22.60635 -22.20935 -20.17199 -19.62999 -18.44587 -16.95564 -16.81988 -16.58840 -16.22383 -15.63451 -15.42056 -15.16903 -14.97681 -14.86104 -14.44760 -14.31924 -14.21945 -13.63238 -13.42948 -13.12428 -12.98569 -12.88116 -12.72019 -12.64666 -12.51158 -12.39006 -12.11980 -11.86366 -11.83014 -11.53656 -11.43020 -11.25730 -10.51129 -10.25285 -9.87326 -9.62859 -9.03838 -8.96796 -6.76236 -0.13952 0.47280 0.71716 1.08306 1.32928 1.46881 1.55912 2.33421 2.48877 2.89903 3.47153 3.62571 3.70268 3.80082 4.05522 4.09655 4.15313 4.29350 4.38693 4.45321 4.51430 4.56465 4.71062 4.73455 4.80631 4.85917 4.88458 4.93542 4.98828 5.04835 5.06753 5.11998 5.15748 5.23048 5.31140 5.39452 5.44336 5.46135 5.55083 5.63413 5.70429 5.70903 5.95479 6.03837 6.09272 6.52136 6.58115 7.60009 8.00118 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.005342 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.259349 B = 5240.660374 C = 6375.259721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.064 4.064 6 C -0.127 4.127 7 C -0.131 4.131 8 C -0.067 4.067 9 C 0.175 3.825 10 C -0.277 4.277 11 C -0.040 4.040 12 C -0.272 4.272 13 C 0.231 3.769 14 C -0.453 4.453 15 H 0.077 0.923 16 C 0.053 3.947 17 N -0.831 5.831 18 Si 1.046 2.954 19 H -0.280 1.280 20 H -0.322 1.322 21 H -0.278 1.278 22 N -0.585 5.585 23 C -0.096 4.096 24 C -0.119 4.119 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.296 0.704 40 H 0.148 0.852 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 19.350 -10.324 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.065 4.065 6 C -0.145 4.145 7 C -0.149 4.149 8 C -0.068 4.068 9 C 0.036 3.964 10 C -0.299 4.299 11 C -0.063 4.063 12 C -0.293 4.293 13 C 0.106 3.894 14 C -0.485 4.485 15 H 0.095 0.905 16 C -0.166 4.166 17 N -0.456 5.456 18 Si 0.883 3.117 19 H -0.208 1.208 20 H -0.256 1.256 21 H -0.206 1.206 22 N -0.304 5.304 23 C -0.114 4.114 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.165 0.835 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.632 18.565 -10.992 21.878 hybrid contribution 0.100 -0.570 0.734 0.935 sum -3.531 17.994 -10.258 21.012 Atomic orbital electron populations 1.21899 0.93156 1.01938 1.02573 1.19585 0.96130 0.95864 0.91287 1.21961 1.01451 0.93552 1.02932 1.21908 1.01026 1.00078 0.96642 1.20232 0.96479 0.93013 0.96748 1.21044 1.01175 0.95509 0.96768 1.21731 0.98016 1.00009 0.95186 1.18906 0.99421 0.94826 0.93641 1.20065 0.93609 0.89115 0.93585 1.21654 1.11536 1.00690 0.96002 1.21420 0.94273 0.93329 0.97317 1.21892 1.11617 0.95522 1.00309 1.18720 0.89100 0.93476 0.88103 1.19532 1.29577 0.90046 1.09318 0.90458 1.26872 0.95937 0.95538 0.98230 1.69630 1.34711 1.10060 1.31247 0.84129 0.75943 0.74404 0.77263 1.20800 1.25557 1.20644 1.66514 1.26963 1.09472 1.27443 1.21461 0.99447 0.92009 0.98517 1.21424 0.97758 1.01338 0.93124 0.92733 0.90452 0.93254 0.91920 0.90833 0.91741 0.93311 0.90400 0.92959 0.85221 0.88171 0.83487 0.82931 0.86344 0.89331 0.83463 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.28 71.98 0.60 -1.71 16 2 C -0.03 -0.52 0.85 -52.93 -0.05 -0.56 16 3 C -0.14 -1.90 7.13 71.98 0.51 -1.39 16 4 C -0.14 -2.41 8.29 71.98 0.60 -1.81 16 5 C -0.06 -1.64 4.77 -19.82 -0.09 -1.73 16 6 C -0.13 -4.06 8.69 22.24 0.19 -3.86 16 7 C -0.13 -5.36 9.56 22.49 0.22 -5.15 16 8 C -0.07 -2.69 5.86 -20.04 -0.12 -2.81 16 9 C 0.17 8.05 6.69 42.17 0.28 8.33 16 10 C -0.28 -10.78 9.44 22.78 0.21 -10.57 16 11 C -0.04 -1.54 10.15 22.39 0.23 -1.31 16 12 C -0.27 -12.65 9.83 22.88 0.22 -12.42 16 13 C 0.23 12.59 6.32 40.26 0.25 12.84 16 14 C -0.45 -26.53 9.68 23.48 0.23 -26.30 16 15 H 0.08 4.63 8.06 -2.91 -0.02 4.61 16 16 C 0.05 3.04 5.52 85.29 0.47 3.51 16 17 N -0.83 -47.47 13.92 21.83 0.30 -47.16 16 18 Si 1.05 54.02 22.26 68.60 1.53 55.55 16 19 H -0.28 -14.58 6.55 99.48 0.65 -13.93 16 20 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 21 H -0.28 -14.96 6.28 99.48 0.63 -14.34 16 22 N -0.58 -31.18 4.38 -178.20 -0.78 -31.96 16 23 C -0.10 -2.87 9.38 22.49 0.21 -2.66 16 24 C -0.12 -2.91 8.96 22.24 0.20 -2.71 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.91 7.38 -2.39 -0.02 0.89 16 28 H 0.06 0.82 7.51 -2.39 -0.02 0.80 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.82 7.51 -2.39 -0.02 0.80 16 31 H 0.05 0.93 7.38 -2.39 -0.02 0.91 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.13 3.67 7.08 -2.91 -0.02 3.65 16 35 H 0.10 4.65 2.42 -2.91 -0.01 4.65 16 36 H 0.15 4.47 6.39 -2.91 -0.02 4.45 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.30 15.36 8.29 -92.71 -0.77 14.60 16 40 H 0.15 3.65 6.38 -2.91 -0.02 3.64 16 41 H 0.16 2.75 5.87 -2.91 -0.02 2.73 16 Total: -1.00 -67.44 320.98 6.11 -61.33 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.89 Total: 12.56 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 4.17 Total: -50.31 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -0.48 Total: -79.13 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 1.53 Total: 55.55 kcal Total: -67.44 6.11 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.456 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds