Wall clock time and date at job start Tue Mar 31 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 C 1.52991 * 109.47355 * 239.99507 * 2 1 3 5 5 C 1.50702 * 109.46988 * 119.99460 * 2 1 3 6 6 C 1.38411 * 119.84143 * 59.99971 * 5 2 1 7 7 C 1.37916 * 120.14658 * 179.97438 * 6 5 2 8 8 C 1.39674 * 119.84763 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.14877 * 179.97438 * 8 7 6 10 10 N 1.32578 * 119.99255 * 316.14164 * 9 8 7 11 11 C 1.31738 * 121.71850 * 179.97438 * 10 9 8 12 12 C 1.38866 * 121.50881 * 0.02562 * 11 10 9 13 13 C 1.36875 * 119.79879 * 359.97438 * 12 11 10 14 14 C 1.41131 * 118.39682 * 0.27535 * 13 12 11 15 15 C 1.40882 * 120.72137 * 179.71959 * 14 13 12 16 16 H 1.08001 * 120.00129 * 151.61536 * 15 14 13 17 17 C 1.40081 * 120.00079 * 331.61347 * 15 14 13 18 18 N 1.30777 * 119.99878 * 348.29740 * 17 15 14 19 19 Si 1.86800 * 119.99865 * 168.29059 * 17 15 14 20 20 H 1.48502 * 109.46645 * 90.00494 * 19 17 15 21 21 H 1.48505 * 109.46820 * 210.00217 * 19 17 15 22 22 H 1.48498 * 109.47261 * 330.00660 * 19 17 15 23 23 C 1.39669 * 119.70331 * 0.25232 * 8 7 6 24 24 C 1.37922 * 119.83884 * 359.48993 * 23 8 7 25 25 H 1.09002 * 109.47442 * 300.01012 * 1 2 3 26 26 H 1.09006 * 109.47107 * 60.00241 * 1 2 3 27 27 H 1.08995 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46765 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46865 * 299.99287 * 3 2 1 30 30 H 1.09002 * 109.47246 * 59.99981 * 3 2 1 31 31 H 1.09003 * 109.47394 * 300.00249 * 4 2 1 32 32 H 1.08997 * 109.47313 * 60.00355 * 4 2 1 33 33 H 1.09004 * 109.47488 * 180.02562 * 4 2 1 34 34 H 1.07996 * 119.92404 * 359.95697 * 6 5 2 35 35 H 1.08004 * 120.07528 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.24276 * 180.02562 * 11 10 9 37 37 H 1.08003 * 120.09616 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.80390 * 179.97438 * 13 12 11 39 39 H 0.96994 * 119.99509 * 179.97438 * 18 17 15 40 40 H 1.07992 * 120.08190 * 179.72339 * 23 8 7 41 41 H 1.08003 * 119.92483 * 180.25153 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.6959 -2.0354 1.4464 7 6 2.1525 -2.6917 2.5702 8 6 2.9557 -2.0160 3.4916 9 6 3.4484 -2.7128 4.6987 10 7 2.6293 -3.4854 5.3986 11 6 3.0324 -4.1225 6.4790 12 6 4.3380 -4.0157 6.9398 13 6 5.2360 -3.2342 6.2643 14 6 4.7961 -2.5503 5.1108 15 6 5.6776 -1.7281 4.3816 16 1 5.5282 -1.5824 3.3219 17 6 6.7478 -1.0994 5.0309 18 7 6.8019 -1.0841 6.3375 19 14 8.0977 -0.2830 4.0305 20 1 7.7393 1.1363 3.7811 21 1 9.3773 -0.3459 4.7816 22 1 8.2496 -0.9905 2.7338 23 6 3.2865 -0.6771 3.2705 24 6 2.8273 -0.0346 2.1397 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1391 33 1 3.1300 -0.7217 -1.2489 34 1 1.0742 -2.5565 0.7335 35 1 1.8896 -3.7259 2.7373 36 1 2.3313 -4.7419 7.0187 37 1 4.6438 -4.5477 7.8286 38 1 6.2553 -3.1392 6.6085 39 1 7.5432 -0.6491 6.7871 40 1 3.9034 -0.1475 3.9811 41 1 3.0857 0.9995 1.9653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259317034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:50 Heat of formation + Delta-G solvation = 26.415148 kcal Electronic energy + Delta-G solvation = -21449.216929 eV Core-core repulsion = 18485.429997 eV Total energy + Delta-G solvation = -2963.786932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40037 -38.25560 -35.78541 -34.17888 -31.22328 -30.76794 -30.26520 -28.09420 -27.17161 -27.12896 -25.67248 -22.99809 -21.91847 -21.02883 -20.48923 -18.74908 -17.43601 -16.45763 -15.64410 -15.04199 -14.75781 -14.25626 -14.09736 -14.01641 -13.77883 -13.29336 -13.02814 -12.83066 -12.49824 -12.33911 -12.27683 -11.78283 -11.61508 -11.54879 -11.51866 -11.43955 -11.21314 -11.08810 -10.94316 -10.75081 -10.65747 -10.27573 -10.02619 -9.77409 -9.45063 -8.49954 -8.18961 -8.08171 -7.96376 -7.28516 -6.89523 -4.54205 1.86415 2.20532 2.63175 2.96034 2.97499 3.02831 3.14740 3.79409 4.47805 4.57638 4.86585 4.96676 5.17297 5.48288 5.53709 5.59106 5.65676 5.69991 5.71373 5.74899 5.86895 5.96894 5.97416 6.11913 6.16928 6.20786 6.23822 6.29691 6.35878 6.43996 6.51824 6.66485 6.75292 6.82188 6.87548 7.02032 7.03985 7.27095 7.31191 7.52985 7.66323 7.74416 7.86410 7.90257 8.36244 8.58028 8.65199 9.55697 9.98119 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.006006 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.818889 B = 4660.602383 C = 6139.987951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.095 4.095 6 C -0.124 4.124 7 C -0.108 4.108 8 C 0.020 3.980 9 C 0.014 3.986 10 N -0.454 5.454 11 C -0.032 4.032 12 C -0.151 4.151 13 C -0.129 4.129 14 C 0.085 3.915 15 C -0.439 4.439 16 H 0.089 0.911 17 C 0.073 3.927 18 N -0.790 5.790 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.092 4.092 24 C -0.130 4.130 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.284 0.716 40 H 0.132 0.868 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 3.210 -9.069 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.194 4.194 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.127 4.127 8 C 0.019 3.981 9 C -0.124 4.124 10 N -0.161 5.161 11 C -0.193 4.193 12 C -0.171 4.171 13 C -0.154 4.154 14 C 0.080 3.920 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.146 4.146 18 N -0.415 5.415 19 Si 0.733 3.267 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.111 4.111 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.150 0.850 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.098 3.209 -9.126 10.935 hybrid contribution 1.622 0.368 0.225 1.679 sum -3.476 3.577 -8.901 10.203 Atomic orbital electron populations 1.21870 0.94325 1.01824 1.01287 1.19405 0.95195 0.94788 0.93147 1.21942 1.01300 0.95301 1.01362 1.21872 1.01294 1.00106 0.96078 1.19612 0.99661 0.94206 0.96015 1.20675 1.01465 0.94281 0.97791 1.21193 0.98155 0.99655 0.93736 1.18437 0.94601 0.92489 0.92528 1.19580 0.90385 1.03958 0.98496 1.67038 1.37780 1.05513 1.05803 1.21667 0.94715 1.05666 0.97272 1.21437 0.95521 1.00365 0.99784 1.21430 0.99683 0.96696 0.97631 1.18351 0.91105 0.90543 0.91955 1.19612 1.07157 1.23133 0.96911 0.89318 1.26004 0.98258 0.95321 0.94976 1.69745 1.29415 1.33271 1.09045 0.86259 0.79543 0.80063 0.80799 1.19086 1.19951 1.18181 1.21455 0.98470 0.94064 0.97134 1.20975 0.99287 0.99624 0.94918 0.92604 0.93001 0.92570 0.92257 0.93020 0.92322 0.92579 0.93004 0.92539 0.87328 0.86742 0.86201 0.88343 0.85507 0.90463 0.85028 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.29 37.16 0.31 -1.25 16 2 C -0.03 -0.32 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.64 7.13 37.16 0.26 -1.38 16 4 C -0.14 -1.58 8.28 37.15 0.31 -1.28 16 5 C -0.09 -1.53 4.77 -104.50 -0.50 -2.03 16 6 C -0.12 -2.11 8.69 -39.64 -0.34 -2.46 16 7 C -0.11 -2.18 9.67 -39.16 -0.38 -2.56 16 8 C 0.02 0.46 5.25 -104.90 -0.55 -0.09 16 9 C 0.01 0.35 6.43 -82.23 -0.53 -0.18 16 10 N -0.45 -11.29 10.15 -9.17 -0.09 -11.38 16 11 C -0.03 -0.75 11.16 -17.36 -0.19 -0.94 16 12 C -0.15 -3.46 10.03 -39.84 -0.40 -3.86 16 13 C -0.13 -3.23 8.72 -38.98 -0.34 -3.57 16 14 C 0.08 2.20 5.54 -106.41 -0.59 1.61 16 15 C -0.44 -10.92 6.74 -37.89 -0.26 -11.18 16 16 H 0.09 2.17 6.46 -52.49 -0.34 1.84 16 17 C 0.07 1.72 5.26 -17.31 -0.09 1.63 16 18 N -0.79 -19.20 10.91 55.55 0.61 -18.60 16 19 Si 0.91 17.78 29.58 -169.99 -5.03 12.75 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 23 C -0.09 -1.93 7.84 -39.16 -0.31 -2.24 16 24 C -0.13 -2.30 8.96 -39.64 -0.36 -2.65 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.64 7.37 -51.93 -0.38 0.26 16 28 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 31 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.59 7.08 -52.49 -0.37 1.22 16 35 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 37 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 38 H 0.13 3.22 6.33 -52.49 -0.33 2.89 16 39 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 40 H 0.13 2.92 6.76 -52.49 -0.35 2.56 16 41 H 0.12 1.80 5.87 -52.48 -0.31 1.50 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -26.77 331.00 -9.38 -36.15 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.77 Total: 8.97 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -4.08 Total: -32.89 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.51 Total: -29.98 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.77 -9.38 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.566 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds