Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00089 * 2 1 4 4 C 1.52997 * 109.47482 * 66.04415 * 3 2 1 5 5 C 1.53001 * 109.47417 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46990 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00141 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99814 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00159 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47011 * 59.99695 * 10 8 6 12 12 H 1.48496 * 109.47027 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47098 * 300.00102 * 10 8 6 14 14 C 1.46896 * 111.00288 * 236.04295 * 2 1 3 15 15 C 1.53000 * 109.47570 * 199.81046 * 14 2 1 16 16 O 1.42910 * 109.46969 * 65.10031 * 15 14 2 17 17 C 1.35938 * 116.99633 * 180.02562 * 16 15 14 18 18 C 1.38706 * 120.03587 * 0.27963 * 17 16 15 19 19 C 1.38157 * 119.97450 * 180.25145 * 18 17 16 20 20 C 1.38454 * 120.02497 * 359.47056 * 19 18 17 21 21 F 1.35096 * 119.96754 * 180.29781 * 20 19 18 22 22 C 1.38455 * 120.06144 * 0.27495 * 20 19 18 23 23 C 1.38146 * 120.03058 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47049 * 177.98617 * 1 2 3 25 25 H 1.08998 * 109.46650 * 297.98380 * 1 2 3 26 26 H 1.08996 * 109.46858 * 57.98798 * 1 2 3 27 27 H 1.09006 * 109.47295 * 186.04436 * 3 2 1 28 28 H 1.09004 * 109.47155 * 306.04314 * 3 2 1 29 29 H 1.09006 * 109.46873 * 300.00279 * 4 3 2 30 30 H 1.09004 * 109.47009 * 59.99809 * 4 3 2 31 31 H 1.08998 * 109.46783 * 299.99931 * 5 4 3 32 32 H 1.08998 * 109.46753 * 59.99645 * 5 4 3 33 33 H 0.97003 * 119.99513 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47094 * 79.80931 * 14 2 1 35 35 H 1.09008 * 109.47102 * 319.80748 * 14 2 1 36 36 H 1.09000 * 109.46795 * 305.10395 * 15 14 2 37 37 H 1.08997 * 109.47630 * 185.10113 * 15 14 2 38 38 H 1.08007 * 120.01812 * 0.02562 * 18 17 16 39 39 H 1.07993 * 119.98465 * 179.74778 * 19 18 17 40 40 H 1.08001 * 119.98559 * 180.02562 * 22 20 19 41 41 H 1.08004 * 120.01563 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4861 1.3179 6 6 1.8202 4.1620 2.6160 7 1 1.2572 3.6264 3.3660 8 6 2.2104 5.4642 2.8462 9 7 2.8956 6.1166 1.9326 10 14 1.7648 6.3024 4.4550 11 1 2.3554 5.5453 5.5878 12 1 2.2965 7.6889 4.4547 13 1 0.2874 6.3394 4.6012 14 6 1.9955 -0.7660 -1.1375 15 6 3.4453 -1.1658 -0.8560 16 8 3.4844 -2.0656 0.2536 17 6 4.7069 -2.5198 0.6370 18 6 5.8452 -2.1031 -0.0374 19 6 7.0866 -2.5696 0.3500 20 6 7.1958 -3.4440 1.4179 21 9 8.4108 -3.8947 1.7995 22 6 6.0610 -3.8566 2.0953 23 6 4.8180 -3.3958 1.7067 24 1 -0.3633 -1.0271 -0.0361 25 1 -0.3632 0.4822 0.9075 26 1 -0.3633 0.5447 -0.8714 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8310 29 1 0.5472 2.0845 1.4264 30 1 2.0658 1.5016 2.1491 31 1 3.2635 3.4594 1.2095 32 1 1.7446 4.0417 0.4870 33 1 3.1698 7.0329 2.0944 34 1 1.9560 -0.1529 -2.0379 35 1 1.3928 -1.6628 -1.2818 36 1 4.0289 -0.2753 -0.6224 37 1 3.8647 -1.6548 -1.7352 38 1 5.7608 -1.4171 -0.8674 39 1 7.9725 -2.2485 -0.1775 40 1 6.1476 -4.5385 2.9284 41 1 3.9329 -3.7175 2.2356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263782530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -65.550646 kcal Electronic energy + Delta-G solvation = -21202.668716 eV Core-core repulsion = 17804.124623 eV Total energy + Delta-G solvation = -3398.544093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.92329 -40.19265 -38.01289 -36.85435 -33.70431 -31.71439 -31.37090 -30.27655 -28.86690 -27.06523 -25.12137 -23.74475 -22.79491 -22.20933 -20.77443 -19.89235 -18.46311 -17.46555 -16.71935 -16.34238 -16.26572 -15.63556 -15.13043 -14.92501 -14.81328 -14.44423 -14.28484 -13.90831 -13.75432 -13.49154 -13.14227 -12.61889 -12.53030 -12.31500 -12.17748 -11.80606 -11.53155 -11.43255 -11.24211 -10.88546 -10.84027 -10.73758 -10.51010 -10.44521 -9.59887 -9.35944 -9.31509 -9.05868 -8.32552 -8.18791 -8.09736 -5.98220 -4.00111 0.99309 1.09517 3.09424 3.35116 3.39059 3.42056 3.43475 4.05283 4.17763 4.48188 4.50624 4.60268 4.84137 4.91888 4.97772 5.14665 5.19301 5.29218 5.37585 5.41520 5.55551 5.56997 5.66820 5.71254 5.81139 5.95208 5.95966 5.99156 6.09907 6.12049 6.31380 6.55489 6.69734 6.76995 7.11456 7.26071 7.32421 7.38996 7.69505 7.84481 8.02112 8.45845 9.06801 9.63803 11.13243 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.003412 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.800044 B = 8204.522267 C = 9478.754400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.053 3.947 4 C -0.104 4.104 5 C 0.023 3.977 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.054 3.946 15 C 0.063 3.937 16 O -0.291 6.291 17 C 0.131 3.869 18 C -0.185 4.185 19 C -0.111 4.111 20 C 0.049 3.951 21 F -0.145 7.145 22 C -0.113 4.113 23 C -0.126 4.126 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -19.991 -7.180 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.074 4.074 4 C -0.142 4.142 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.075 4.075 15 C -0.012 4.012 16 O -0.204 6.204 17 C 0.085 3.915 18 C -0.204 4.204 19 C -0.130 4.130 20 C 0.030 3.970 21 F -0.124 7.124 22 C -0.131 4.131 23 C -0.144 4.144 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.572 -20.097 -6.705 21.485 hybrid contribution -0.029 1.097 0.003 1.098 sum 3.543 -19.000 -6.702 20.456 Atomic orbital electron populations 1.22388 0.87326 1.01074 1.01371 1.62030 1.07890 1.15061 1.41182 1.22393 0.99423 0.86205 0.99380 1.21639 1.00115 0.98111 0.94360 1.19063 0.96146 0.89333 0.96959 1.21219 1.34781 0.97599 1.02108 0.92717 1.25025 0.95215 0.97498 0.96733 1.69959 1.38367 1.11318 1.34039 0.86659 0.78759 0.78478 0.84123 1.20197 1.21313 1.20262 1.22128 0.94022 0.98536 0.92774 1.22960 0.98654 0.92405 0.87210 1.86211 1.25194 1.59981 1.48986 1.19110 0.84814 0.93647 0.93934 1.21158 0.91671 1.04274 1.03272 1.20924 0.98541 0.97091 0.96446 1.17555 0.80441 1.00665 0.98333 1.91475 1.42058 1.88025 1.90805 1.20940 0.90777 1.01025 1.00405 1.20299 0.97899 0.99153 0.97085 0.92030 0.90545 0.95977 0.91512 0.95252 0.93378 0.92573 0.96727 0.96898 0.93005 0.92551 0.90090 0.91340 0.91890 0.84539 0.84649 0.84243 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.25 60.07 0.56 0.90 16 2 N -0.54 -7.86 4.64 -242.92 -1.13 -8.99 16 3 C 0.05 0.90 4.78 -3.83 -0.02 0.89 16 4 C -0.10 -2.19 5.08 -26.73 -0.14 -2.32 16 5 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 6 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 9 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.05 0.61 5.39 -3.83 -0.02 0.59 16 15 C 0.06 0.70 4.93 37.16 0.18 0.88 16 16 O -0.29 -3.78 10.09 -19.55 -0.20 -3.98 16 17 C 0.13 1.59 6.69 -39.23 -0.26 1.33 16 18 C -0.18 -2.01 9.04 -39.44 -0.36 -2.36 16 19 C -0.11 -1.17 10.02 -39.53 -0.40 -1.57 16 20 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 21 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 22 C -0.11 -1.16 10.02 -39.54 -0.40 -1.56 16 23 C -0.13 -1.39 9.98 -39.44 -0.39 -1.78 16 24 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 25 H 0.08 1.09 6.57 -51.93 -0.34 0.75 16 26 H 0.02 0.27 8.12 -51.93 -0.42 -0.15 16 27 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 28 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.05 0.99 6.60 -51.93 -0.34 0.65 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.58 8.00 -51.93 -0.42 0.16 16 35 H 0.08 0.82 7.80 -51.92 -0.40 0.42 16 36 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 37 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 38 H 0.14 1.25 6.30 -52.48 -0.33 0.92 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -31.59 342.64 -8.71 -40.31 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.23 Total: -3.28 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.08 Total: -17.99 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.39 Total: -35.44 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.20 Total: -3.98 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.59 -8.71 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263782530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.245 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds