Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47010 * 2 1 4 4 C 1.52995 * 109.47301 * 240.00067 * 2 1 3 5 5 C 1.50698 * 109.47206 * 64.63343 * 4 2 1 6 6 H 1.07995 * 120.00368 * 5.08025 * 5 4 2 7 7 C 1.37884 * 119.99671 * 185.07661 * 5 4 2 8 8 N 1.31511 * 120.00435 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 60.00180 * 9 7 5 11 11 H 1.48500 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47060 * 299.99982 * 9 7 5 13 13 N 1.46904 * 109.47219 * 119.99936 * 2 1 3 14 14 C 1.46893 * 111.00293 * 179.60839 * 13 2 1 15 15 C 1.46901 * 110.99418 * 303.56022 * 13 2 1 16 16 C 1.53007 * 109.46870 * 163.46590 * 15 13 2 17 17 O 1.42901 * 109.47138 * 64.11345 * 16 15 13 18 18 C 1.35955 * 117.00030 * 180.02562 * 17 16 15 19 19 C 1.38654 * 120.06500 * 359.97438 * 18 17 16 20 20 C 1.38178 * 119.97092 * 179.97438 * 19 18 17 21 21 C 1.38254 * 120.09617 * 0.02562 * 20 19 18 22 22 C 1.38255 * 120.12698 * 0.02562 * 21 20 19 23 23 C 1.38333 * 120.02949 * 359.69831 * 22 21 20 24 24 F 1.35103 * 120.05378 * 180.27497 * 23 22 21 25 25 H 1.08992 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46927 * 300.00332 * 1 2 3 27 27 H 1.08998 * 109.47024 * 60.00004 * 1 2 3 28 28 H 1.09003 * 109.47112 * 184.63886 * 4 2 1 29 29 H 1.09009 * 109.46965 * 304.63242 * 4 2 1 30 30 H 0.96992 * 120.00257 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47453 * 189.76003 * 14 13 2 32 32 H 1.09001 * 109.46803 * 309.75700 * 14 13 2 33 33 H 1.08998 * 109.47539 * 69.75611 * 14 13 2 34 34 H 1.08999 * 109.47465 * 43.46975 * 15 13 2 35 35 H 1.08996 * 109.47317 * 283.46512 * 15 13 2 36 36 H 1.08999 * 109.46800 * 304.11838 * 16 15 13 37 37 H 1.08997 * 109.47053 * 184.10954 * 16 15 13 38 38 H 1.08007 * 120.01304 * 359.95746 * 19 18 17 39 39 H 1.07998 * 119.94928 * 180.02562 * 20 19 18 40 40 H 1.08005 * 119.93797 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.98727 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6337 0.0524 -2.4770 6 1 1.1404 1.0076 -2.3747 7 6 1.8917 -0.4595 -3.7310 8 7 2.4920 -1.6229 -3.8557 9 14 1.3886 0.4997 -5.2529 10 1 2.0725 1.8178 -5.2558 11 1 1.7750 -0.2616 -6.4680 12 1 -0.0822 0.7050 -5.2449 13 7 2.0197 -0.6925 1.1995 14 6 3.4881 -0.7202 1.2288 15 6 1.4804 -0.0772 2.4195 16 6 1.6592 -1.0377 3.5970 17 8 3.0529 -1.2405 3.8389 18 6 3.3874 -2.0743 4.8593 19 6 2.3952 -2.6838 5.6120 20 6 2.7373 -3.5313 6.6483 21 6 4.0679 -3.7722 6.9364 22 6 5.0605 -3.1658 6.1891 23 6 4.7239 -2.3209 5.1468 24 9 5.6935 -1.7324 4.4127 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1269 -0.7937 -1.2086 29 1 1.6105 -1.7222 -1.2917 30 1 2.6732 -1.9832 -4.7378 31 1 3.8232 -1.3822 2.0273 32 1 3.8637 -1.0851 0.2728 33 1 3.8671 0.2859 1.4079 34 1 0.4201 0.1348 2.2814 35 1 2.0129 0.8515 2.6241 36 1 1.1886 -1.9923 3.3618 37 1 1.1943 -0.6126 4.4865 38 1 1.3553 -2.4959 5.3885 39 1 1.9642 -4.0061 7.2341 40 1 4.3324 -4.4348 7.7473 41 1 6.0992 -3.3553 6.4164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276361071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = -52.595535 kcal Electronic energy + Delta-G solvation = -21933.489925 eV Core-core repulsion = 18535.507608 eV Total energy + Delta-G solvation = -3397.982317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.78468 -40.14219 -38.13011 -37.00854 -33.26257 -31.43607 -30.88397 -30.06640 -29.15040 -27.19292 -24.67617 -23.84160 -22.89962 -22.55839 -21.04697 -18.98946 -18.59732 -17.20225 -16.70273 -16.59364 -16.28189 -15.33728 -15.26667 -14.77588 -14.62590 -14.44720 -14.22936 -13.88603 -13.46798 -13.11883 -12.79563 -12.45278 -12.13741 -12.03170 -11.88174 -11.61807 -11.47437 -11.30991 -11.25787 -10.97131 -10.83598 -10.68791 -10.38698 -10.27007 -9.79083 -9.18104 -9.13433 -9.06049 -8.30521 -8.28322 -7.67090 -5.96663 -3.98416 0.93493 1.10104 3.04336 3.34400 3.39142 3.40344 3.41004 4.12431 4.36726 4.51970 4.55782 4.62968 4.94040 5.01203 5.10898 5.22930 5.28485 5.32286 5.38510 5.63835 5.78008 5.85263 5.87548 5.96899 5.98958 5.99196 6.17024 6.24901 6.32070 6.37025 6.51001 6.71423 6.76443 6.93110 7.12491 7.25669 7.57739 7.65289 7.84148 7.91494 8.12031 8.46885 9.07838 9.64263 11.14661 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031503 B = 0.003277 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.590295 B = 8542.537671 C = 8979.369796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.082 3.918 3 H 0.026 0.974 4 C 0.032 3.968 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.535 5.535 14 C 0.022 3.978 15 C 0.047 3.953 16 C 0.064 3.936 17 O -0.295 6.295 18 C 0.105 3.895 19 C -0.185 4.185 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.118 4.118 23 C 0.064 3.936 24 F -0.132 7.132 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.017 0.983 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.014 0.986 34 H 0.100 0.900 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -2.467 22.552 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.044 0.956 4 C -0.005 4.005 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.126 4.126 15 C -0.082 4.082 16 C -0.011 4.011 17 O -0.208 6.208 18 C 0.058 3.942 19 C -0.204 4.204 20 C -0.109 4.109 21 C -0.156 4.156 22 C -0.137 4.137 23 C 0.044 3.956 24 F -0.110 7.110 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.118 0.882 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.077 -2.934 22.210 22.403 hybrid contribution 0.030 1.345 -0.930 1.636 sum -0.047 -1.589 21.280 21.339 Atomic orbital electron populations 1.21825 0.95508 1.01623 1.00035 1.21863 0.94778 0.95359 0.90455 0.95593 1.19183 0.96172 0.96169 0.89017 1.21153 1.38623 1.04989 0.90900 0.92806 1.24989 0.95340 0.94980 0.99005 1.69957 1.41984 1.17859 1.23414 0.86689 0.78955 0.79990 0.82525 1.20345 1.21319 1.20280 1.62140 1.08938 1.53652 1.01289 1.22608 0.87146 0.99603 1.03217 1.22319 1.01594 0.94579 0.89689 1.23088 0.79280 1.00930 0.97773 1.86348 1.27698 1.60603 1.46146 1.19161 0.92326 0.92880 0.89859 1.21212 0.99089 1.01503 0.98577 1.21006 0.96532 0.96885 0.96463 1.20879 0.92265 1.01530 1.00913 1.21016 1.01173 0.96896 0.94603 1.17058 0.82908 1.00263 0.95360 1.91521 1.61258 1.82412 1.75835 0.92593 0.94966 0.91381 0.96488 0.95403 0.92971 0.90720 0.90431 0.96700 0.88244 0.94379 0.90839 0.92047 0.84475 0.85257 0.85104 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.72 37.16 0.32 -2.17 16 2 C 0.08 1.74 2.10 -67.71 -0.14 1.60 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.03 0.83 4.37 -27.89 -0.12 0.71 16 5 C -0.52 -14.56 8.30 -34.44 -0.29 -14.84 16 6 H 0.05 1.46 7.23 -52.49 -0.38 1.08 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.54 -10.03 4.58 -234.89 -1.08 -11.11 16 14 C 0.02 0.42 8.88 60.06 0.53 0.95 16 15 C 0.05 0.68 5.38 -3.82 -0.02 0.66 16 16 C 0.06 0.80 5.06 37.16 0.19 0.99 16 17 O -0.29 -4.31 6.92 -19.60 -0.14 -4.45 16 18 C 0.10 1.36 6.69 -39.18 -0.26 1.10 16 19 C -0.18 -1.89 9.04 -39.45 -0.36 -2.25 16 20 C -0.09 -0.76 10.04 -39.60 -0.40 -1.16 16 21 C -0.14 -1.14 10.04 -39.57 -0.40 -1.53 16 22 C -0.12 -1.17 10.02 -39.54 -0.40 -1.57 16 23 C 0.06 0.83 7.31 -39.30 -0.29 0.55 16 24 F -0.13 -1.97 17.11 2.25 0.04 -1.93 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.49 6.02 -51.93 -0.31 0.18 16 27 H 0.07 1.36 7.03 -51.93 -0.37 0.99 16 28 H 0.02 0.47 5.97 -51.93 -0.31 0.16 16 29 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 1.38 5.59 -51.93 -0.29 1.09 16 32 H 0.08 1.65 5.74 -51.93 -0.30 1.35 16 33 H 0.01 0.27 7.99 -51.93 -0.41 -0.14 16 34 H 0.10 1.32 5.46 -51.93 -0.28 1.03 16 35 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 36 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 37 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 38 H 0.14 1.17 6.30 -52.48 -0.33 0.84 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -31.46 331.67 -8.04 -39.50 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.86 Total: -2.05 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.72 Total: -15.38 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.34 Total: -37.40 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.14 Total: -4.45 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.46 -8.04 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.097 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds