Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47010 * 2 1 4 4 C 1.52995 * 109.47301 * 240.00067 * 2 1 3 5 5 C 1.50698 * 109.47206 * 64.63343 * 4 2 1 6 6 H 1.07995 * 120.00368 * 5.08025 * 5 4 2 7 7 C 1.37884 * 119.99671 * 185.07661 * 5 4 2 8 8 N 1.31511 * 120.00435 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 60.00180 * 9 7 5 11 11 H 1.48500 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47060 * 299.99982 * 9 7 5 13 13 N 1.46904 * 109.47219 * 119.99936 * 2 1 3 14 14 C 1.46893 * 111.00293 * 179.60839 * 13 2 1 15 15 C 1.46901 * 110.99418 * 303.56022 * 13 2 1 16 16 C 1.53007 * 109.46870 * 163.46590 * 15 13 2 17 17 O 1.42901 * 109.47138 * 64.11345 * 16 15 13 18 18 C 1.35955 * 117.00030 * 180.02562 * 17 16 15 19 19 C 1.38654 * 120.06500 * 359.97438 * 18 17 16 20 20 C 1.38178 * 119.97092 * 179.97438 * 19 18 17 21 21 C 1.38254 * 120.09617 * 0.02562 * 20 19 18 22 22 C 1.38255 * 120.12698 * 0.02562 * 21 20 19 23 23 C 1.38333 * 120.02949 * 359.69831 * 22 21 20 24 24 F 1.35103 * 120.05378 * 180.27497 * 23 22 21 25 25 H 1.08992 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46927 * 300.00332 * 1 2 3 27 27 H 1.08998 * 109.47024 * 60.00004 * 1 2 3 28 28 H 1.09003 * 109.47112 * 184.63886 * 4 2 1 29 29 H 1.09009 * 109.46965 * 304.63242 * 4 2 1 30 30 H 0.96992 * 120.00257 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47453 * 189.76003 * 14 13 2 32 32 H 1.09001 * 109.46803 * 309.75700 * 14 13 2 33 33 H 1.08998 * 109.47539 * 69.75611 * 14 13 2 34 34 H 1.08999 * 109.47465 * 43.46975 * 15 13 2 35 35 H 1.08996 * 109.47317 * 283.46512 * 15 13 2 36 36 H 1.08999 * 109.46800 * 304.11838 * 16 15 13 37 37 H 1.08997 * 109.47053 * 184.10954 * 16 15 13 38 38 H 1.08007 * 120.01304 * 359.95746 * 19 18 17 39 39 H 1.07998 * 119.94928 * 180.02562 * 20 19 18 40 40 H 1.08005 * 119.93797 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.98727 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6337 0.0524 -2.4770 6 1 1.1404 1.0076 -2.3747 7 6 1.8917 -0.4595 -3.7310 8 7 2.4920 -1.6229 -3.8557 9 14 1.3886 0.4997 -5.2529 10 1 2.0725 1.8178 -5.2558 11 1 1.7750 -0.2616 -6.4680 12 1 -0.0822 0.7050 -5.2449 13 7 2.0197 -0.6925 1.1995 14 6 3.4881 -0.7202 1.2288 15 6 1.4804 -0.0772 2.4195 16 6 1.6592 -1.0377 3.5970 17 8 3.0529 -1.2405 3.8389 18 6 3.3874 -2.0743 4.8593 19 6 2.3952 -2.6838 5.6120 20 6 2.7373 -3.5313 6.6483 21 6 4.0679 -3.7722 6.9364 22 6 5.0605 -3.1658 6.1891 23 6 4.7239 -2.3209 5.1468 24 9 5.6935 -1.7324 4.4127 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1269 -0.7937 -1.2086 29 1 1.6105 -1.7222 -1.2917 30 1 2.6732 -1.9832 -4.7378 31 1 3.8232 -1.3822 2.0273 32 1 3.8637 -1.0851 0.2728 33 1 3.8671 0.2859 1.4079 34 1 0.4201 0.1348 2.2814 35 1 2.0129 0.8515 2.6241 36 1 1.1886 -1.9923 3.3618 37 1 1.1943 -0.6126 4.4865 38 1 1.3553 -2.4959 5.3885 39 1 1.9642 -4.0061 7.2341 40 1 4.3324 -4.4348 7.7473 41 1 6.0992 -3.3553 6.4164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276361071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = -71.817837 kcal Electronic energy + Delta-G solvation = -21934.323467 eV Core-core repulsion = 18535.507608 eV Total energy + Delta-G solvation = -3398.815859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.79141 -41.04745 -39.37803 -38.14322 -35.24632 -33.08710 -31.65227 -31.23570 -30.27057 -29.01465 -26.07867 -25.59639 -24.12675 -23.38133 -22.25808 -20.67436 -19.49985 -18.68359 -18.02985 -17.63129 -17.35719 -16.59913 -16.48222 -16.38921 -15.84770 -15.64881 -15.29961 -15.27008 -14.85910 -14.33069 -14.16349 -13.74615 -13.61493 -13.24939 -13.20803 -13.08973 -12.87901 -12.69695 -12.62755 -12.50110 -12.20415 -12.14153 -11.87016 -11.73272 -11.67910 -11.19004 -10.98334 -10.50578 -9.89866 -9.22403 -9.12882 -8.17845 -6.28000 0.17133 0.32928 1.39644 1.42840 1.50527 2.14820 2.40666 2.65903 3.03869 3.15326 3.30749 3.76627 3.90738 4.10149 4.16311 4.20687 4.25119 4.31495 4.36312 4.40835 4.46791 4.58461 4.61883 4.68639 4.85025 4.86790 5.03530 5.08903 5.12097 5.20900 5.22995 5.31209 5.43104 5.46621 5.51753 5.71169 5.76047 5.79693 6.09753 6.29141 6.35681 6.40876 6.88141 7.39968 8.94307 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031503 B = 0.003277 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.590295 B = 8542.537671 C = 8979.369796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.091 3.909 3 H 0.018 0.982 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.263 1.263 13 N -0.543 5.543 14 C 0.034 3.966 15 C 0.045 3.955 16 C 0.067 3.933 17 O -0.325 6.325 18 C 0.078 3.922 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.130 4.130 22 C -0.120 4.120 23 C 0.023 3.977 24 F -0.155 7.155 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H -0.013 1.013 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.121 0.879 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -2.265 24.699 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 H 0.036 0.964 4 C 0.002 3.998 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.188 1.188 13 N -0.268 5.268 14 C -0.114 4.114 15 C -0.082 4.082 16 C -0.008 4.008 17 O -0.239 6.239 18 C 0.032 3.968 19 C -0.206 4.206 20 C -0.102 4.102 21 C -0.148 4.148 22 C -0.138 4.138 23 C 0.004 3.996 24 F -0.134 7.134 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.005 0.995 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.138 0.862 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.173 0.827 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.988 -2.725 24.385 24.617 hybrid contribution 0.656 1.196 -1.457 1.996 sum -1.331 -1.528 22.928 23.017 Atomic orbital electron populations 1.21726 0.93190 1.01715 1.01483 1.21598 0.96505 0.94054 0.89517 0.96370 1.19013 0.94189 0.94907 0.91667 1.21555 1.38378 1.05388 0.91817 0.91964 1.25962 0.95214 0.95955 1.02694 1.70113 1.43295 1.19739 1.24270 0.85523 0.79198 0.78495 0.77954 1.19413 1.21061 1.18818 1.62088 1.08343 1.54136 1.02208 1.22430 0.87913 0.99510 1.01539 1.22481 1.02365 0.94984 0.88369 1.23103 0.78962 1.00644 0.98081 1.86252 1.28684 1.61563 1.47406 1.19437 0.92988 0.93916 0.90491 1.21501 0.99288 1.01297 0.98530 1.21480 0.97572 0.95567 0.95578 1.21347 0.91851 1.00748 1.00824 1.21332 1.02769 0.96021 0.93702 1.17611 0.82883 1.02210 0.96946 1.91447 1.62146 1.83128 1.76696 0.93139 0.90733 0.92682 0.99462 0.98801 0.92904 0.90021 0.93683 0.96734 0.86153 0.94468 0.90699 0.88502 0.82749 0.81805 0.81665 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.72 71.98 0.63 -3.89 16 2 C 0.09 3.90 2.10 44.91 0.09 4.00 16 3 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 4 C 0.04 2.17 4.37 29.85 0.13 2.30 16 5 C -0.53 -30.64 8.30 25.60 0.21 -30.43 16 6 H 0.06 3.40 7.23 -2.91 -0.02 3.37 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.54 -20.59 4.58 -897.04 -4.11 -24.70 16 14 C 0.03 1.38 8.88 127.69 1.13 2.51 16 15 C 0.05 1.27 5.38 86.31 0.46 1.73 16 16 C 0.07 1.55 5.06 71.98 0.36 1.91 16 17 O -0.32 -9.49 6.92 -93.04 -0.64 -10.13 16 18 C 0.08 2.00 6.69 22.53 0.15 2.15 16 19 C -0.19 -3.41 9.04 22.36 0.20 -3.20 16 20 C -0.08 -1.11 10.04 22.26 0.22 -0.89 16 21 C -0.13 -1.72 10.04 22.28 0.22 -1.49 16 22 C -0.12 -2.23 10.02 22.30 0.22 -2.00 16 23 C 0.02 0.61 7.31 22.45 0.16 0.78 16 24 F -0.16 -4.95 17.11 44.97 0.77 -4.18 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.07 6.02 -2.39 -0.01 2.05 16 27 H 0.05 2.14 7.03 -2.39 -0.02 2.12 16 28 H -0.01 -0.77 5.97 -2.39 -0.01 -0.78 16 29 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.08 3.18 5.59 -2.39 -0.01 3.17 16 32 H 0.04 2.07 5.74 -2.39 -0.01 2.06 16 33 H 0.01 0.56 7.99 -2.39 -0.02 0.54 16 34 H 0.12 2.80 5.46 -2.39 -0.01 2.79 16 35 H 0.04 1.06 7.94 -2.39 -0.02 1.04 16 36 H 0.07 1.70 7.66 -2.39 -0.02 1.68 16 37 H 0.10 1.56 7.66 -2.39 -0.02 1.54 16 38 H 0.15 2.14 6.30 -2.91 -0.02 2.13 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -72.09 331.67 4.03 -68.07 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.02 Total: 8.18 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.68 Total: -26.10 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.83 Total: -82.76 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.64 Total: -10.13 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.77 Total: -4.18 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.09 4.03 -68.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.749 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds