Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 C 1.52998 * 109.46954 * 119.99953 * 2 1 3 5 5 C 1.50703 * 109.47316 * 185.00016 * 4 2 1 6 6 H 1.07995 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00207 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46835 * 89.99810 * 9 7 5 11 11 H 1.48493 * 109.47598 * 210.00195 * 9 7 5 12 12 H 1.48504 * 109.46929 * 330.00283 * 9 7 5 13 13 N 1.46895 * 109.47024 * 239.99276 * 2 1 3 14 14 C 1.46899 * 111.00358 * 306.04984 * 13 2 1 15 15 C 1.46907 * 110.99813 * 70.00117 * 13 2 1 16 16 C 1.53003 * 109.46930 * 75.78314 * 15 13 2 17 17 O 1.42898 * 109.47280 * 65.07598 * 16 15 13 18 18 C 1.35959 * 117.00445 * 180.02562 * 17 16 15 19 19 C 1.38662 * 120.05789 * 359.97438 * 18 17 16 20 20 C 1.38177 * 119.96657 * 180.02562 * 19 18 17 21 21 C 1.38259 * 120.09789 * 0.02562 * 20 19 18 22 22 C 1.38252 * 120.12561 * 359.97438 * 21 20 19 23 23 C 1.38333 * 120.02740 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.04508 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46887 * 60.00253 * 1 2 3 26 26 H 1.08996 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46788 * 300.00698 * 1 2 3 28 28 H 1.09008 * 109.47171 * 304.99689 * 4 2 1 29 29 H 1.09000 * 109.47305 * 64.99581 * 4 2 1 30 30 H 0.97002 * 120.00296 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47184 * 188.86802 * 14 13 2 32 32 H 1.08994 * 109.47232 * 308.87460 * 14 13 2 33 33 H 1.08999 * 109.46995 * 68.87246 * 14 13 2 34 34 H 1.08997 * 109.47300 * 315.78381 * 15 13 2 35 35 H 1.09002 * 109.47363 * 195.77719 * 15 13 2 36 36 H 1.09001 * 109.47238 * 305.08118 * 16 15 13 37 37 H 1.08999 * 109.47323 * 185.08180 * 16 15 13 38 38 H 1.07997 * 120.01579 * 0.02562 * 19 18 17 39 39 H 1.08007 * 119.95096 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.94033 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.98919 * 179.72515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1927 2.3584 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0615 2.4368 10 1 6.4708 0.1614 3.1894 11 1 6.6441 -2.2565 3.1240 12 1 6.6413 -0.9849 1.0592 13 7 2.0197 -0.6926 -1.1993 14 6 1.4343 -2.0356 -1.3076 15 6 1.7529 0.0970 -2.4090 16 6 2.7480 1.2564 -2.4910 17 8 4.0690 0.7391 -2.6628 18 6 5.0794 1.6442 -2.7538 19 6 4.8049 3.0013 -2.6799 20 6 5.8332 3.9196 -2.7731 21 6 7.1357 3.4872 -2.9406 22 6 7.4139 2.1350 -3.0148 23 6 6.3885 1.2112 -2.9210 24 9 6.6599 -0.1103 -2.9939 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6054 -0.2616 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 4.0606 -2.2437 4.0355 31 1 1.9281 -2.5836 -2.1101 32 1 1.5704 -2.5682 -0.3665 33 1 0.3699 -1.9513 -1.5268 34 1 0.7377 0.4918 -2.3688 35 1 1.8614 -0.5377 -3.2886 36 1 2.7030 1.8395 -1.5713 37 1 2.4944 1.8937 -3.3381 38 1 3.7879 3.3405 -2.5495 39 1 5.6191 4.9766 -2.7151 40 1 7.9376 4.2072 -3.0128 41 1 8.4316 1.7999 -3.1501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276361074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -51.204039 kcal Electronic energy + Delta-G solvation = -22677.751133 eV Core-core repulsion = 19279.829156 eV Total energy + Delta-G solvation = -3397.921977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.47716 -39.84458 -38.12180 -36.96713 -32.95674 -31.31013 -30.62525 -29.92987 -28.75694 -27.30072 -24.98470 -23.74642 -22.65753 -22.32439 -21.30853 -18.68761 -18.21138 -16.87577 -16.39052 -16.31585 -15.95598 -15.43442 -15.09313 -14.81484 -14.41390 -14.26573 -14.10990 -13.78987 -13.19044 -13.10407 -12.64581 -12.34327 -12.12249 -11.86441 -11.80393 -11.64567 -11.39336 -11.27154 -11.01897 -10.99909 -10.77676 -10.56457 -10.54229 -10.33570 -9.82626 -9.15865 -8.92064 -8.88216 -8.19707 -8.00870 -7.45295 -5.83183 -3.79991 1.19050 1.36877 3.31033 3.44365 3.50429 3.60341 3.66186 4.40362 4.49267 4.64041 4.76289 4.85190 5.13664 5.21111 5.25596 5.32460 5.44551 5.50294 5.55029 5.66381 5.75901 5.81855 5.93973 5.99114 6.02932 6.05783 6.11567 6.15902 6.23214 6.40303 6.44164 6.61538 6.70119 6.75978 6.98907 7.52072 7.56746 7.69328 7.91461 8.03758 8.18408 8.63694 9.26530 9.82092 11.28877 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.006906 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.976358 B = 4053.632540 C = 5459.919290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.066 0.934 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.508 5.508 14 C 0.029 3.971 15 C 0.050 3.950 16 C 0.067 3.933 17 O -0.280 6.280 18 C 0.113 3.887 19 C -0.188 4.188 20 C -0.091 4.091 21 C -0.140 4.140 22 C -0.119 4.119 23 C 0.067 3.933 24 F -0.130 7.130 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.256 0.744 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 10.098 -14.456 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.231 5.231 14 C -0.119 4.119 15 C -0.079 4.079 16 C -0.008 4.008 17 O -0.192 6.192 18 C 0.065 3.935 19 C -0.207 4.207 20 C -0.110 4.110 21 C -0.159 4.159 22 C -0.138 4.138 23 C 0.047 3.953 24 F -0.109 7.109 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.214 9.661 -14.268 17.232 hybrid contribution 0.093 0.078 0.177 0.214 sum 0.306 9.739 -14.091 17.132 Atomic orbital electron populations 1.22531 0.99816 1.01506 1.00546 1.21994 0.89891 0.98359 0.92331 0.91550 1.19194 0.96464 0.95367 0.89593 1.21164 0.91693 1.32815 1.06740 0.92131 1.24965 0.97875 0.95882 0.96030 1.69959 1.35159 1.37167 1.12419 0.86703 0.86712 0.77153 0.78238 1.21066 1.21537 1.19596 1.62079 1.58426 1.02005 1.00583 1.22357 0.95277 0.91101 1.03185 1.22154 0.94927 0.95312 0.95490 1.22953 0.80351 0.97111 1.00404 1.86311 1.14653 1.32172 1.86073 1.19139 0.88092 0.89414 0.96867 1.21168 1.00941 0.91205 1.07415 1.20954 0.92320 0.99465 0.98236 1.20826 0.96952 0.94618 1.03481 1.20992 0.98363 0.92899 1.01546 1.17050 0.91005 0.78644 1.08584 1.91521 1.94212 1.31192 1.93947 0.94266 0.92663 0.92460 0.96446 0.96168 0.93411 0.92571 0.89970 0.96794 0.92851 0.90587 0.91406 0.92455 0.84712 0.85426 0.85259 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.48 37.16 0.31 -2.76 16 2 C 0.08 1.66 2.17 -67.71 -0.15 1.51 16 3 H 0.07 1.35 6.57 -51.93 -0.34 1.01 16 4 C 0.03 0.79 4.38 -27.88 -0.12 0.67 16 5 C -0.49 -13.99 8.84 -34.44 -0.30 -14.30 16 6 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.91 -27.88 13.29 55.43 0.74 -27.15 16 9 Si 0.88 23.09 29.54 -169.99 -5.02 18.07 16 10 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.51 -9.75 4.31 -234.89 -1.01 -10.76 16 14 C 0.03 0.51 8.51 60.06 0.51 1.02 16 15 C 0.05 0.75 5.27 -3.82 -0.02 0.73 16 16 C 0.07 0.99 4.93 37.16 0.18 1.17 16 17 O -0.28 -5.11 9.95 -19.61 -0.20 -5.30 16 18 C 0.11 1.87 6.69 -39.18 -0.26 1.61 16 19 C -0.19 -2.51 9.04 -39.45 -0.36 -2.87 16 20 C -0.09 -1.03 10.04 -39.60 -0.40 -1.43 16 21 C -0.14 -1.58 10.04 -39.57 -0.40 -1.97 16 22 C -0.12 -1.58 10.02 -39.54 -0.40 -1.98 16 23 C 0.07 1.13 7.31 -39.30 -0.29 0.84 16 24 F -0.13 -2.49 17.11 2.25 0.04 -2.45 16 25 H 0.04 0.55 6.45 -51.93 -0.34 0.22 16 26 H 0.05 0.92 6.53 -51.93 -0.34 0.58 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.02 0.55 6.18 -51.93 -0.32 0.23 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.67 6.03 -51.93 -0.31 1.36 16 33 H 0.01 0.21 6.76 -51.93 -0.35 -0.14 16 34 H 0.05 0.70 6.17 -51.93 -0.32 0.38 16 35 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 36 H 0.07 1.04 6.18 -51.93 -0.32 0.72 16 37 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 38 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 39 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 41 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -33.08 334.12 -8.06 -41.14 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.86 Total: -2.27 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.78 Total: -16.32 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.27 Total: -37.91 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.20 Total: -5.30 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.08 -8.06 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.063 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds