Wall clock time and date at job start Tue Mar 31 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47297 * 2 1 4 4 C 1.53006 * 109.47361 * 239.99893 * 2 1 3 5 5 C 1.50696 * 109.46977 * 177.24587 * 4 2 1 6 6 H 1.07997 * 120.00442 * 5.00955 * 5 4 2 7 7 C 1.37879 * 119.99846 * 185.00177 * 5 4 2 8 8 N 1.31512 * 120.00369 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00003 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47024 * 89.99575 * 9 7 5 11 11 H 1.48495 * 109.47316 * 209.99631 * 9 7 5 12 12 H 1.48505 * 109.46800 * 330.00134 * 9 7 5 13 13 N 1.46907 * 109.47240 * 119.99601 * 2 1 3 14 14 C 1.46895 * 111.00174 * 289.57734 * 13 2 1 15 15 C 1.46901 * 110.99920 * 53.53040 * 13 2 1 16 16 C 1.52992 * 109.47322 * 162.57137 * 15 13 2 17 17 O 1.42904 * 109.47037 * 67.07388 * 16 15 13 18 18 C 1.35939 * 117.00292 * 180.02562 * 17 16 15 19 19 C 1.38708 * 120.02880 * 359.72271 * 18 17 16 20 20 C 1.38153 * 119.96822 * 179.79355 * 19 18 17 21 21 C 1.38460 * 120.02903 * 0.48347 * 20 19 18 22 22 F 1.35098 * 119.96683 * 179.72601 * 21 20 19 23 23 C 1.38446 * 120.05844 * 359.75107 * 21 20 19 24 24 C 1.38150 * 120.03670 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.46911 * 60.00654 * 1 2 3 26 26 H 1.08996 * 109.47226 * 300.00034 * 1 2 3 27 27 H 1.08999 * 109.46977 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46621 * 297.24814 * 4 2 1 29 29 H 1.08999 * 109.46805 * 57.24254 * 4 2 1 30 30 H 0.97006 * 120.00319 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47206 * 67.30176 * 14 13 2 32 32 H 1.08999 * 109.47317 * 187.30696 * 14 13 2 33 33 H 1.09010 * 109.46799 * 307.30721 * 14 13 2 34 34 H 1.08997 * 109.46996 * 282.58057 * 15 13 2 35 35 H 1.09004 * 109.47055 * 42.57444 * 15 13 2 36 36 H 1.09004 * 109.47633 * 187.07312 * 16 15 13 37 37 H 1.09003 * 109.47615 * 307.08174 * 16 15 13 38 38 H 1.08001 * 120.01955 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.98301 * 180.21549 * 20 19 18 40 40 H 1.08005 * 119.97989 * 179.97438 * 23 21 20 41 41 H 1.07999 * 120.01810 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5455 -0.6624 -1.2838 6 1 4.0883 -0.2326 -0.4550 7 6 4.2299 -1.1574 -2.3735 8 7 5.5437 -1.1056 -2.4040 9 14 3.2911 -1.9005 -3.8074 10 1 2.9795 -0.8391 -4.7983 11 1 4.1205 -2.9506 -4.4512 12 1 2.0268 -2.5022 -3.3126 13 7 2.0197 -0.6924 1.1995 14 6 1.7620 0.1019 2.4080 15 6 1.4266 -2.0316 1.3133 16 6 2.2529 -2.8743 2.2869 17 8 2.1279 -2.3382 3.6056 18 6 2.8056 -2.9746 4.5974 19 6 3.5701 -4.0950 4.3075 20 6 4.2618 -4.7383 5.3157 21 6 4.1840 -4.2709 6.6167 22 9 4.8565 -4.9042 7.6025 23 6 3.4174 -3.1555 6.9082 24 6 2.7284 -2.5076 5.9013 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7176 -1.7622 -1.2248 29 1 1.6369 -0.2368 -2.1385 30 1 6.0252 -1.4543 -3.1705 31 1 0.6877 0.1569 2.5844 32 1 2.2469 -0.3694 3.2629 33 1 2.1600 1.1077 2.2734 34 1 0.4049 -1.9462 1.6833 35 1 1.4196 -2.5103 0.3341 36 1 1.8899 -3.9020 2.2765 37 1 3.3002 -2.8558 1.9851 38 1 3.6277 -4.4622 3.2935 39 1 4.8599 -5.6086 5.0896 40 1 3.3574 -2.7923 7.9236 41 1 2.1301 -1.6378 6.1291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276363446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:09 Heat of formation + Delta-G solvation = -52.177312 kcal Electronic energy + Delta-G solvation = -22001.631269 eV Core-core repulsion = 18603.667087 eV Total energy + Delta-G solvation = -3397.964182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.87726 -40.13138 -38.19875 -36.90168 -32.93044 -31.57656 -31.22472 -29.85818 -28.79598 -27.72402 -25.09861 -23.75747 -22.75623 -22.16886 -21.41647 -18.80962 -18.35779 -17.38364 -16.68456 -16.55032 -16.08245 -15.55762 -15.29780 -14.81590 -14.45282 -14.39501 -13.77768 -13.75942 -13.59542 -13.18255 -12.90454 -12.58565 -12.46770 -12.26471 -12.12690 -11.71832 -11.60598 -11.53620 -11.16908 -11.07101 -10.78256 -10.69078 -10.50845 -10.06278 -9.70435 -9.56347 -9.29299 -9.06345 -8.46342 -8.10508 -7.56413 -5.94395 -3.89095 1.05981 1.16010 3.25368 3.31582 3.40132 3.41095 3.50343 4.23424 4.45630 4.50225 4.59967 4.68312 5.02505 5.13944 5.29895 5.35262 5.42103 5.45037 5.51907 5.60895 5.72222 5.75206 5.82257 5.89843 5.95499 6.02597 6.04902 6.10376 6.13622 6.20126 6.39572 6.48887 6.54390 6.65366 6.73043 7.05035 7.30200 7.41343 7.72511 7.79459 7.92921 8.69540 9.20574 9.68513 11.19395 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.003963 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.171059 B = 7062.947400 C = 7954.100514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.093 3.907 3 H 0.077 0.923 4 C -0.006 4.006 5 C -0.493 4.493 6 H 0.081 0.919 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.511 5.511 14 C 0.023 3.977 15 C 0.059 3.941 16 C 0.061 3.939 17 O -0.304 6.304 18 C 0.132 3.868 19 C -0.181 4.181 20 C -0.111 4.111 21 C 0.047 3.953 22 F -0.146 7.146 23 C -0.114 4.114 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.014 0.986 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -4.794 15.106 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.015 4.015 3 H 0.095 0.905 4 C -0.044 4.044 5 C -0.532 4.532 6 H 0.099 0.901 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.234 5.234 14 C -0.125 4.125 15 C -0.069 4.069 16 C -0.014 4.014 17 O -0.218 6.218 18 C 0.086 3.914 19 C -0.199 4.199 20 C -0.129 4.129 21 C 0.028 3.972 22 F -0.125 7.125 23 C -0.133 4.133 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.832 -4.743 14.972 17.550 hybrid contribution -0.987 -0.635 -0.789 1.414 sum -8.819 -5.378 14.183 17.546 Atomic orbital electron populations 1.22566 0.99593 1.01274 1.01082 1.21743 0.89920 0.98619 0.91214 0.90517 1.19693 0.98084 0.94933 0.91668 1.21082 0.89100 1.38576 1.04399 0.90056 1.25027 0.94650 0.96028 0.98046 1.69912 1.06369 1.47717 1.30654 0.86925 0.80227 0.79371 0.83513 1.20551 1.21626 1.19421 1.62055 1.57779 1.01464 1.02080 1.22558 0.98080 0.98049 0.93844 1.22176 0.94689 0.91593 0.98455 1.23120 1.02858 0.96484 0.78914 1.86193 1.65947 1.52811 1.16802 1.19126 0.91933 0.91279 0.89104 1.21236 1.00739 0.97370 1.00588 1.20949 1.00136 1.00887 0.90972 1.17550 0.98712 0.95435 0.85506 1.91469 1.78694 1.81401 1.60908 1.20901 0.97266 0.94864 1.00285 1.20275 1.02964 1.02122 0.89560 0.92536 0.93642 0.93051 0.96884 0.96705 0.93039 0.96757 0.90334 0.92423 0.94627 0.87955 0.92141 0.89972 0.84170 0.84656 0.84413 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 8.50 37.16 0.32 -2.58 16 2 C 0.09 1.76 2.28 -67.71 -0.15 1.61 16 3 H 0.08 1.52 7.96 -51.93 -0.41 1.11 16 4 C -0.01 -0.15 3.44 -27.88 -0.10 -0.24 16 5 C -0.49 -13.56 9.35 -34.44 -0.32 -13.88 16 6 H 0.08 2.47 7.93 -52.49 -0.42 2.05 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -27.73 13.96 55.43 0.77 -26.96 16 9 Si 0.87 21.29 27.37 -169.99 -4.65 16.64 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.26 6.69 56.52 0.38 -5.88 16 13 N -0.51 -9.24 4.26 -234.88 -1.00 -10.24 16 14 C 0.02 0.36 8.77 60.06 0.53 0.88 16 15 C 0.06 0.93 4.18 -3.83 -0.02 0.92 16 16 C 0.06 0.87 5.04 37.15 0.19 1.05 16 17 O -0.30 -4.24 7.24 -19.55 -0.14 -4.38 16 18 C 0.13 1.70 6.69 -39.23 -0.26 1.43 16 19 C -0.18 -2.19 9.04 -39.44 -0.36 -2.54 16 20 C -0.11 -1.27 10.02 -39.53 -0.40 -1.66 16 21 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 22 F -0.15 -1.78 17.27 2.25 0.04 -1.74 16 23 C -0.11 -1.21 10.02 -39.54 -0.40 -1.61 16 24 C -0.13 -1.47 9.99 -39.44 -0.39 -1.86 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.64 6.86 -51.93 -0.36 0.29 16 27 H 0.05 0.77 6.72 -51.93 -0.35 0.42 16 28 H 0.01 0.29 5.59 -51.93 -0.29 0.00 16 29 H 0.01 0.34 7.29 -51.93 -0.38 -0.04 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.01 0.20 6.85 -51.93 -0.36 -0.15 16 32 H 0.08 1.21 5.61 -51.93 -0.29 0.92 16 33 H 0.06 0.90 7.98 -51.92 -0.41 0.48 16 34 H 0.04 0.52 7.13 -51.93 -0.37 0.15 16 35 H 0.10 1.72 5.90 -51.93 -0.31 1.41 16 36 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 37 H 0.08 1.31 7.67 -51.93 -0.40 0.91 16 38 H 0.14 1.58 6.30 -52.49 -0.33 1.25 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -30.34 329.14 -7.69 -38.03 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.92 Total: 0.23 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.75 Total: -16.53 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.23 Total: -37.20 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.14 Total: -4.38 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.65 Total: 16.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.34 -7.69 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276363446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.150 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds