Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47623 * 2 1 4 4 C 1.52999 * 109.47297 * 120.00553 * 2 1 3 5 5 C 1.50697 * 109.47524 * 183.50652 * 4 2 1 6 6 H 1.07999 * 119.99886 * 4.35349 * 5 4 2 7 7 C 1.37881 * 120.00216 * 184.35075 * 5 4 2 8 8 N 1.31516 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47303 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47111 * 120.00169 * 9 7 5 12 12 H 1.48499 * 109.47036 * 240.00114 * 9 7 5 13 13 N 1.46906 * 109.47172 * 240.00198 * 2 1 3 14 14 C 1.46899 * 110.99988 * 72.84421 * 13 2 1 15 15 C 1.46903 * 110.99985 * 308.88661 * 13 2 1 16 16 C 1.52994 * 109.46963 * 189.99724 * 15 13 2 17 17 O 1.42905 * 109.47098 * 65.00217 * 16 15 13 18 18 C 1.35947 * 117.00043 * 179.97438 * 17 16 15 19 19 C 1.38708 * 120.03131 * 359.72579 * 18 17 16 20 20 C 1.38148 * 119.96879 * 179.78974 * 19 18 17 21 21 C 1.38446 * 120.03277 * 0.48614 * 20 19 18 22 22 F 1.35106 * 119.97351 * 179.72768 * 21 20 19 23 23 C 1.38458 * 120.06079 * 359.74500 * 21 20 19 24 24 C 1.38148 * 120.02712 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47417 * 299.99694 * 1 2 3 26 26 H 1.09000 * 109.47205 * 59.99809 * 1 2 3 27 27 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46891 * 303.50977 * 4 2 1 29 29 H 1.09001 * 109.47140 * 63.50109 * 4 2 1 30 30 H 0.97004 * 119.99714 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47571 * 53.81237 * 14 13 2 32 32 H 1.08996 * 109.47419 * 173.82079 * 14 13 2 33 33 H 1.09009 * 109.46733 * 293.81823 * 14 13 2 34 34 H 1.08995 * 109.47258 * 309.99895 * 15 13 2 35 35 H 1.08998 * 109.46837 * 69.99928 * 15 13 2 36 36 H 1.09002 * 109.47188 * 185.00015 * 16 15 13 37 37 H 1.09002 * 109.47436 * 305.00186 * 16 15 13 38 38 H 1.08001 * 120.01364 * 0.02562 * 19 18 17 39 39 H 1.08010 * 119.98171 * 180.20870 * 20 19 18 40 40 H 1.07993 * 119.98633 * 180.02562 * 23 21 20 41 41 H 1.07997 * 120.01636 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5444 -0.6466 1.2934 6 1 4.0789 -0.0764 0.5480 7 6 4.2386 -1.3060 2.2856 8 7 3.5877 -1.9999 3.1935 9 14 6.1034 -1.2127 2.3408 10 1 6.5907 -0.3739 1.2164 11 1 6.5309 -0.6100 3.6289 12 1 6.6712 -2.5797 2.2214 13 7 2.0196 -0.6925 -1.1995 14 6 1.8137 0.1268 -2.4013 15 6 1.3834 -2.0087 -1.3442 16 6 2.0897 -2.7979 -2.4482 17 8 3.4357 -3.0701 -2.0527 18 6 4.2066 -3.7693 -2.9273 19 6 3.6761 -4.1893 -4.1382 20 6 4.4619 -4.8959 -5.0279 21 6 5.7754 -5.1938 -4.7071 22 9 6.5412 -5.8897 -5.5757 23 6 6.3048 -4.7794 -3.4967 24 6 5.5226 -4.0684 -2.6072 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6262 -0.2452 2.1381 29 1 1.7288 -1.7656 1.2182 30 1 4.0761 -2.4642 3.8913 31 1 2.2606 1.1097 -2.2520 32 1 2.2822 -0.3592 -3.2571 33 1 0.7453 0.2379 -2.5865 34 1 1.4581 -2.5537 -0.4033 35 1 0.3334 -1.8778 -1.6059 36 1 1.5635 -3.7375 -2.6167 37 1 2.0925 -2.2130 -3.3681 38 1 2.6503 -3.9606 -4.3870 39 1 4.0501 -5.2201 -5.9723 40 1 7.3296 -5.0120 -3.2479 41 1 5.9357 -3.7456 -1.6630 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276363448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = -52.996126 kcal Electronic energy + Delta-G solvation = -22244.819486 eV Core-core repulsion = 18846.819798 eV Total energy + Delta-G solvation = -3397.999688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.78013 -39.94871 -38.11336 -36.76972 -32.96759 -31.45905 -31.06378 -29.68534 -28.47979 -27.25637 -25.32986 -23.60815 -22.77520 -22.26831 -21.28572 -18.76823 -18.21376 -17.25415 -16.51777 -16.17458 -15.89205 -15.47497 -15.03384 -14.79485 -14.50773 -14.06124 -13.98651 -13.72393 -13.54630 -13.11867 -12.81608 -12.47523 -12.33434 -12.07568 -11.90699 -11.66154 -11.44653 -11.40202 -11.05503 -10.88356 -10.63925 -10.58120 -10.39798 -10.28297 -9.93076 -9.17604 -9.15967 -8.91910 -8.20256 -7.94837 -7.49376 -5.83126 -3.79303 1.18209 1.29775 3.41911 3.42936 3.49331 3.55432 3.63686 4.33845 4.47888 4.62612 4.69131 4.78554 5.08261 5.19217 5.29285 5.39068 5.42926 5.54848 5.56644 5.62193 5.69933 5.78158 5.82179 5.93955 5.95059 6.05222 6.10550 6.24237 6.24498 6.26742 6.36111 6.50095 6.63510 6.77190 6.97999 7.50187 7.61006 7.69459 7.90043 8.01368 8.17351 8.63112 9.25364 9.81868 11.29267 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.005453 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.541270 B = 5133.922372 C = 6724.605000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.030 3.970 5 C -0.481 4.481 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.906 5.906 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.506 5.506 14 C 0.021 3.979 15 C 0.054 3.946 16 C 0.065 3.935 17 O -0.272 6.272 18 C 0.136 3.864 19 C -0.192 4.192 20 C -0.114 4.114 21 C 0.043 3.957 22 F -0.148 7.148 23 C -0.111 4.111 24 C -0.124 4.124 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.015 0.985 29 H 0.021 0.979 30 H 0.255 0.745 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.015 0.985 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -3.391 -15.223 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.547 5.547 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.229 5.229 14 C -0.128 4.128 15 C -0.074 4.074 16 C -0.011 4.011 17 O -0.184 6.184 18 C 0.089 3.911 19 C -0.211 4.211 20 C -0.132 4.132 21 C 0.023 3.977 22 F -0.126 7.126 23 C -0.130 4.130 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.317 -3.497 -14.851 15.433 hybrid contribution 0.129 -0.082 -0.388 0.417 sum -2.188 -3.580 -15.239 15.806 Atomic orbital electron populations 1.22537 0.99770 1.01253 1.00756 1.21959 0.89943 0.98306 0.92002 0.91214 1.19195 0.96557 0.95367 0.89543 1.21135 0.91415 1.29264 1.10102 0.92259 1.24952 0.97827 0.95903 0.96034 1.69969 1.34942 1.33907 1.15899 0.86615 0.86793 0.77590 0.77470 1.19788 1.21595 1.21310 1.62067 1.57339 1.01638 1.01839 1.22443 0.97985 0.98422 0.93961 1.22180 0.93783 0.91724 0.99752 1.22971 0.80968 0.98475 0.98656 1.86471 1.23422 1.67741 1.40765 1.19232 0.91581 0.91329 0.88973 1.21110 1.01091 1.04212 0.94691 1.20841 0.92367 0.99641 1.00400 1.17524 0.90113 1.00236 0.89785 1.91458 1.75267 1.77228 1.68693 1.20947 1.00818 0.98817 0.92447 1.20442 0.91567 1.00884 1.01357 0.92434 0.94206 0.92908 0.96723 0.96055 0.93508 0.91779 0.92484 0.96690 0.88242 0.93532 0.92336 0.92387 0.84794 0.84994 0.84370 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.41 37.15 0.31 -2.68 16 2 C 0.09 1.69 2.26 -67.71 -0.15 1.53 16 3 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 4 C 0.03 0.76 4.41 -27.88 -0.12 0.63 16 5 C -0.48 -13.41 8.80 -34.44 -0.30 -13.71 16 6 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.91 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.51 -9.24 4.31 -234.89 -1.01 -10.26 16 14 C 0.02 0.30 9.00 60.06 0.54 0.84 16 15 C 0.05 0.87 4.20 -3.83 -0.02 0.86 16 16 C 0.06 0.92 4.79 37.15 0.18 1.10 16 17 O -0.27 -4.82 10.08 -19.57 -0.20 -5.02 16 18 C 0.14 2.09 6.69 -39.23 -0.26 1.83 16 19 C -0.19 -2.41 9.04 -39.44 -0.36 -2.77 16 20 C -0.11 -1.35 10.02 -39.54 -0.40 -1.75 16 21 C 0.04 0.56 7.30 -39.42 -0.29 0.27 16 22 F -0.15 -1.95 17.27 2.25 0.04 -1.91 16 23 C -0.11 -1.46 10.02 -39.53 -0.40 -1.86 16 24 C -0.12 -1.86 9.98 -39.44 -0.39 -2.25 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.56 6.93 -51.93 -0.36 0.20 16 27 H 0.05 0.84 6.54 -51.93 -0.34 0.50 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.57 6.34 -51.93 -0.33 0.24 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 32 H 0.06 0.77 6.47 -51.93 -0.34 0.44 16 33 H 0.01 0.20 6.98 -51.92 -0.36 -0.17 16 34 H 0.10 1.92 6.17 -51.93 -0.32 1.60 16 35 H 0.05 0.65 6.81 -51.93 -0.35 0.30 16 36 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 37 H 0.06 0.72 5.91 -51.93 -0.31 0.42 16 38 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.99 334.70 -8.08 -39.08 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.92 Total: -1.05 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.75 Total: -16.55 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.28 Total: -36.80 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.99 -8.08 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276363448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.920 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds