Wall clock time and date at job start Tue Mar 31 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47625 * 2 1 4 4 C 1.35955 * 117.00428 * 179.97438 * 3 2 1 5 5 C 1.38657 * 120.06283 * 0.02562 * 4 3 2 6 6 C 1.38174 * 119.97209 * 180.27722 * 5 4 3 7 7 C 1.38262 * 120.09543 * 359.46325 * 6 5 4 8 8 C 1.50702 * 119.94158 * 180.25820 * 7 6 5 9 9 N 1.46897 * 109.47116 * 264.70419 * 8 7 6 10 10 C 1.46896 * 110.99958 * 199.77238 * 9 8 7 11 11 C 1.52997 * 109.47769 * 75.75086 * 10 9 8 12 12 C 1.46898 * 111.00269 * 75.81166 * 9 8 7 13 13 C 1.50703 * 109.46862 * 190.00015 * 12 9 8 14 14 H 1.07994 * 120.00389 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99727 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99783 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00033 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47266 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47495 * 120.00019 * 17 15 13 20 20 H 1.48505 * 109.47084 * 239.99903 * 17 15 13 21 21 C 1.38263 * 120.12304 * 0.55862 * 7 6 5 22 22 C 1.38328 * 120.02842 * 359.69762 * 21 7 6 23 23 F 1.35106 * 120.04689 * 180.02562 * 22 21 7 24 24 H 1.09000 * 109.47292 * 300.00416 * 1 2 3 25 25 H 1.08998 * 109.47002 * 59.99888 * 1 2 3 26 26 H 1.08995 * 109.47626 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47292 * 239.99584 * 2 1 3 28 28 H 1.09006 * 109.46846 * 119.99837 * 2 1 3 29 29 H 1.08007 * 120.01117 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.95511 * 179.72474 * 6 5 4 31 31 H 1.09000 * 109.47017 * 24.70124 * 8 7 6 32 32 H 1.08999 * 109.47535 * 144.70135 * 8 7 6 33 33 H 1.09007 * 109.46939 * 195.75289 * 10 9 8 34 34 H 1.09002 * 109.47219 * 315.74943 * 10 9 8 35 35 H 1.08996 * 109.47100 * 294.85944 * 11 10 9 36 36 H 1.09004 * 109.46934 * 54.85478 * 11 10 9 37 37 H 1.08999 * 109.47806 * 174.85755 * 11 10 9 38 38 H 1.08992 * 109.47254 * 309.99795 * 12 9 8 39 39 H 1.08994 * 109.47240 * 70.00511 * 12 9 8 40 40 H 0.97003 * 119.99638 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.98102 * 179.72830 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.2000 0.4266 0.0005 6 6 5.5696 0.6098 0.0069 7 6 6.0982 1.8874 0.0020 8 6 7.5924 2.0831 0.0031 9 7 8.0596 2.2794 1.3819 10 6 9.3792 2.9244 1.4038 11 6 9.2247 4.4130 1.0859 12 6 8.0831 1.0072 2.1160 13 6 8.3267 1.2758 3.5787 14 1 8.4511 2.2900 3.9282 15 6 8.3907 0.2265 4.4710 16 7 8.2386 -1.0086 4.0455 17 14 8.6919 0.5593 6.2842 18 1 8.8277 2.0218 6.5031 19 1 7.5485 0.0434 7.0789 20 1 9.9398 -0.1227 6.7120 21 6 5.2584 2.9858 0.0025 22 6 3.8866 2.8083 0.0015 23 9 3.0657 3.8814 0.0014 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.7885 -0.5720 0.0005 30 1 6.2281 -0.2462 0.0113 31 1 8.0745 1.2027 -0.4220 32 1 7.8446 2.9593 -0.5942 33 1 9.8240 2.8082 2.3922 34 1 10.0237 2.4586 0.6583 35 1 8.8656 4.5308 0.0635 36 1 8.5090 4.8596 1.7761 37 1 10.1895 4.9092 1.1915 38 1 7.1262 0.4997 1.9942 39 1 8.8813 0.3766 1.7246 40 1 8.2833 -1.7467 4.6732 41 1 5.6738 3.9827 0.0031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278460271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:09 Heat of formation + Delta-G solvation = -63.129757 kcal Electronic energy + Delta-G solvation = -22092.096929 eV Core-core repulsion = 18693.657814 eV Total energy + Delta-G solvation = -3398.439115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.48119 -39.89369 -38.06422 -36.28733 -32.67965 -32.10773 -30.82729 -30.39375 -29.28767 -26.90119 -24.68816 -23.91906 -22.42497 -21.88783 -21.23791 -19.74492 -18.24054 -16.70420 -16.52903 -16.26938 -16.17521 -15.10044 -15.00859 -14.68295 -14.38637 -14.25538 -13.84358 -13.68620 -13.18314 -13.08667 -12.90569 -12.69945 -12.29402 -12.06337 -11.86035 -11.66522 -11.49748 -11.31439 -11.12038 -10.96390 -10.77863 -10.69332 -10.63114 -10.46403 -10.12903 -9.77988 -9.17619 -8.61718 -8.43409 -7.84566 -7.25976 -6.03647 -4.03637 1.44702 1.52762 3.14762 3.30460 3.38217 3.43242 3.82216 4.43380 4.47187 4.80268 4.81929 4.96258 5.02065 5.12660 5.21657 5.32382 5.35083 5.46456 5.56813 5.65642 5.67146 5.78467 5.79729 5.88558 5.96894 6.07014 6.11962 6.17727 6.36615 6.37876 6.46296 6.70717 6.78872 6.88343 6.90836 7.30156 7.33399 7.47197 7.80849 8.09367 8.20394 8.54205 9.04194 9.60306 11.07368 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.005025 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.160669 B = 5570.796032 C = 6750.853330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.313 6.313 4 C 0.088 3.912 5 C -0.181 4.181 6 C -0.072 4.072 7 C -0.065 4.065 8 C 0.092 3.908 9 N -0.532 5.532 10 C 0.056 3.944 11 C -0.144 4.144 12 C 0.189 3.811 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.095 4.095 22 C 0.061 3.939 23 F -0.139 7.139 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.018 0.982 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.036 0.964 39 H -0.011 1.011 40 H 0.260 0.740 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 2.893 -10.845 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.042 3.958 5 C -0.200 4.200 6 C -0.091 4.091 7 C -0.066 4.066 8 C -0.036 4.036 9 N -0.257 5.257 10 C -0.073 4.073 11 C -0.202 4.202 12 C 0.064 3.936 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.114 4.114 22 C 0.041 3.959 23 F -0.118 7.118 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.007 0.993 40 H 0.069 0.931 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.018 3.201 -10.536 14.233 hybrid contribution 0.622 -0.673 0.757 1.188 sum -8.396 2.529 -9.779 13.134 Atomic orbital electron populations 1.21760 0.92849 1.02705 1.03463 1.22792 0.95747 0.82042 1.01624 1.86081 1.18335 1.29254 1.89114 1.18870 0.83026 0.92941 1.00958 1.21043 0.94018 0.97408 1.07521 1.20993 0.94116 0.97392 0.96552 1.19598 0.96031 0.91885 0.99123 1.20982 0.90013 1.00079 0.92535 1.62146 1.25416 1.27945 1.10182 1.21982 0.90232 0.93271 1.01770 1.21808 1.00747 0.96889 1.00755 1.19811 0.96599 0.84170 0.92983 1.21208 1.47949 0.93247 0.91909 0.91819 1.24962 0.95583 0.95025 0.98962 1.69960 1.50816 0.98415 1.34701 0.86487 0.77666 0.78436 0.85131 1.19632 1.21056 1.21146 1.20782 0.89719 1.00557 1.00355 1.16905 0.87902 0.80724 1.10343 1.91456 1.72129 1.53675 1.94557 0.91496 0.91654 0.90415 0.92034 0.91729 0.84926 0.85082 0.94473 0.90993 0.89486 0.96344 0.93860 0.92098 0.93387 0.94575 0.99290 0.93066 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.15 0.38 -0.93 16 2 C 0.05 0.59 5.46 37.15 0.20 0.79 16 3 O -0.31 -4.76 10.00 -19.60 -0.20 -4.96 16 4 C 0.09 1.43 6.69 -39.18 -0.26 1.17 16 5 C -0.18 -2.78 9.04 -39.45 -0.36 -3.14 16 6 C -0.07 -1.20 8.38 -39.60 -0.33 -1.53 16 7 C -0.07 -1.12 5.04 -104.60 -0.53 -1.65 16 8 C 0.09 1.59 4.94 -4.98 -0.02 1.57 16 9 N -0.53 -11.07 4.34 -237.53 -1.03 -12.11 16 10 C 0.06 1.04 5.51 -3.83 -0.02 1.02 16 11 C -0.14 -2.20 9.96 37.16 0.37 -1.83 16 12 C 0.19 4.78 4.54 -4.98 -0.02 4.76 16 13 C -0.50 -13.99 8.23 -34.44 -0.28 -14.27 16 14 H 0.06 1.77 7.31 -52.49 -0.38 1.38 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.09 -1.56 9.70 -39.54 -0.38 -1.95 16 22 C 0.06 1.04 7.31 -39.30 -0.29 0.75 16 23 F -0.14 -2.42 17.11 2.25 0.04 -2.38 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.13 1.70 6.30 -52.48 -0.33 1.37 16 30 H 0.13 2.14 7.97 -52.49 -0.42 1.72 16 31 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 32 H 0.07 1.08 6.54 -51.93 -0.34 0.74 16 33 H 0.09 1.82 6.58 -51.92 -0.34 1.48 16 34 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 35 H 0.04 0.59 6.89 -51.93 -0.36 0.23 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.96 6.30 -51.93 -0.33 0.64 16 39 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -30.60 340.47 -8.20 -38.80 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.21 Total: -1.75 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.64 Total: -13.76 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.30 Total: -37.68 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.60 -8.20 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278460271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.333 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds