Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46709 * 2 1 4 4 N 1.46501 * 109.46646 * 176.14481 * 3 2 1 5 5 C 1.36929 * 120.00305 * 95.39357 * 4 3 2 6 6 H 1.08005 * 120.00277 * 39.00461 * 5 4 3 7 7 C 1.38807 * 120.00344 * 218.73194 * 5 4 3 8 8 N 1.31615 * 120.00415 * 209.70705 * 7 5 4 9 9 Si 1.86803 * 119.99895 * 29.70764 * 7 5 4 10 10 H 1.48498 * 109.47093 * 94.47607 * 9 7 5 11 11 H 1.48500 * 109.47295 * 214.48064 * 9 7 5 12 12 H 1.48500 * 109.47098 * 334.47692 * 9 7 5 13 13 C 1.46507 * 119.99771 * 275.39205 * 4 3 2 14 14 C 1.50700 * 109.46973 * 275.76306 * 13 4 3 15 15 C 1.38256 * 119.93983 * 269.72643 * 14 13 4 16 16 C 1.38190 * 120.09341 * 179.76667 * 15 14 13 17 17 C 1.38654 * 119.96709 * 0.50985 * 16 15 14 18 18 O 1.35960 * 120.05957 * 179.71954 * 17 16 15 19 19 C 1.42904 * 116.99983 * 0.02562 * 18 17 16 20 20 C 1.52996 * 109.46857 * 179.97438 * 19 18 17 21 21 C 1.38909 * 119.87873 * 359.74528 * 17 16 15 22 22 F 1.35094 * 120.04761 * 179.97438 * 21 17 16 23 23 C 1.38259 * 119.93133 * 90.00285 * 14 13 4 24 24 H 1.08995 * 109.46737 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47192 * 299.99183 * 1 2 3 26 26 H 1.09004 * 109.46998 * 59.98779 * 1 2 3 27 27 H 1.08999 * 109.47106 * 240.00329 * 2 1 3 28 28 H 1.08993 * 109.46915 * 119.99995 * 2 1 3 29 29 H 1.09002 * 109.47283 * 56.14486 * 3 2 1 30 30 H 1.08996 * 109.47316 * 296.14298 * 3 2 1 31 31 H 0.96998 * 120.00063 * 0.02562 * 8 7 5 32 32 H 1.08997 * 109.46961 * 35.76715 * 13 4 3 33 33 H 1.09003 * 109.46830 * 155.76946 * 13 4 3 34 34 H 1.07997 * 119.95474 * 0.02562 * 15 14 13 35 35 H 1.08001 * 120.01380 * 180.25153 * 16 15 14 36 36 H 1.08994 * 109.46811 * 299.99854 * 19 18 17 37 37 H 1.09004 * 109.47123 * 60.00065 * 19 18 17 38 38 H 1.09003 * 109.47593 * 299.99946 * 20 19 18 39 39 H 1.08999 * 109.47636 * 60.00035 * 20 19 18 40 40 H 1.09004 * 109.47131 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.99184 * 359.95650 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5020 1.4436 0.0929 5 6 4.2603 1.5291 -1.0441 6 1 3.9510 2.1756 -1.8522 7 6 5.4294 0.7892 -1.1560 8 7 6.4272 1.2415 -1.8854 9 14 5.5865 -0.8485 -0.2713 10 1 5.2083 -1.9483 -1.1948 11 1 6.9902 -1.0375 0.1750 12 1 4.6858 -0.8618 0.9093 13 6 4.1529 1.3532 1.4023 14 6 4.2408 2.7271 2.0154 15 6 5.3509 3.5173 1.7816 16 6 5.4327 4.7795 2.3383 17 6 4.4049 5.2502 3.1412 18 8 4.4860 6.4895 3.6945 19 6 5.6588 7.2533 3.4061 20 6 5.5704 8.6089 4.1098 21 6 3.2925 4.4531 3.3796 22 9 2.2894 4.9081 4.1618 23 6 3.2137 3.1925 2.8154 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6213 1.9760 0.8534 30 1 1.7342 1.9361 -0.9225 31 1 6.3459 2.0920 -2.3445 32 1 3.5704 0.7013 2.0533 33 1 5.1561 0.9443 1.2819 34 1 6.1534 3.1493 1.1596 35 1 6.2986 5.3973 2.1514 36 1 6.5384 6.7161 3.7606 37 1 5.7365 7.4074 2.3298 38 1 4.6907 9.1459 3.7549 39 1 5.4925 8.4552 5.1861 40 1 6.4648 9.1917 3.8895 41 1 2.3493 2.5719 2.9997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278462531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -51.683125 kcal Electronic energy + Delta-G solvation = -22347.301523 eV Core-core repulsion = 18949.358771 eV Total energy + Delta-G solvation = -3397.942752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.44373 -39.78246 -37.81571 -35.96087 -33.03400 -32.11056 -31.35259 -30.28735 -29.43582 -26.03605 -25.17585 -23.97480 -22.01499 -21.86913 -21.13668 -19.76265 -18.20571 -17.54048 -16.39361 -16.34350 -16.22257 -15.09118 -14.87633 -14.57591 -14.40517 -14.23213 -13.79630 -13.71234 -13.16192 -13.03529 -12.95689 -12.82005 -12.66173 -12.26604 -11.78055 -11.62752 -11.36086 -11.24453 -11.09252 -10.82554 -10.74684 -10.66519 -10.57867 -10.33646 -9.93434 -9.67061 -9.35639 -8.54159 -8.43631 -7.72115 -7.04859 -6.32346 -3.45618 1.54045 1.65606 3.20006 3.42203 3.49313 3.63388 3.96542 4.53447 4.54831 4.82141 4.84696 5.06493 5.11476 5.14306 5.29448 5.31585 5.41659 5.55666 5.59401 5.65439 5.70334 5.71470 5.85511 5.91980 5.96925 6.09756 6.15874 6.30333 6.37198 6.45999 6.49982 6.54396 6.60353 6.69347 6.87345 7.02531 7.04914 7.13448 7.56336 8.13663 8.45187 8.98084 9.55959 10.18872 10.96868 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.005392 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.662894 B = 5191.738352 C = 6312.235053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.148 3.852 4 N -0.591 5.591 5 C -0.357 4.357 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.900 5.900 9 Si 1.037 2.963 10 H -0.295 1.295 11 H -0.292 1.292 12 H -0.274 1.274 13 C 0.183 3.817 14 C -0.086 4.086 15 C -0.066 4.066 16 C -0.182 4.182 17 C 0.077 3.923 18 O -0.316 6.316 19 C 0.054 3.946 20 C -0.150 4.150 21 C 0.059 3.941 22 F -0.143 7.143 23 C -0.116 4.116 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.267 0.733 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 6.846 10.375 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.312 5.312 5 C -0.486 4.486 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.536 5.536 9 Si 0.866 3.134 10 H -0.223 1.223 11 H -0.219 1.219 12 H -0.200 1.200 13 C 0.057 3.943 14 C -0.090 4.090 15 C -0.085 4.085 16 C -0.201 4.201 17 C 0.031 3.969 18 O -0.230 6.230 19 C -0.021 4.021 20 C -0.207 4.207 21 C 0.040 3.960 22 F -0.121 7.121 23 C -0.136 4.136 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.540 5.699 10.738 12.420 hybrid contribution -1.002 1.397 -0.451 1.777 sum -3.542 7.096 10.287 12.990 Atomic orbital electron populations 1.21732 0.97200 1.00540 1.01030 1.22134 0.93883 1.00849 1.01776 1.20969 0.84598 0.93332 0.98929 1.44090 1.00384 1.85528 1.01189 1.19947 1.07477 1.24546 0.96620 0.92561 1.26302 0.92430 1.02033 0.99167 1.70907 1.28755 1.22180 1.31736 0.84211 0.75455 0.77184 0.76546 1.22292 1.21902 1.20002 1.20306 0.98090 0.89051 0.86854 1.20937 0.92541 1.00934 0.94588 1.21042 0.98406 0.92416 0.96646 1.21109 0.98886 0.98405 1.01709 1.18818 0.95014 0.85539 0.97520 1.86065 1.42383 1.25050 1.69526 1.22755 0.86915 0.92174 1.00265 1.21760 1.02915 0.94637 1.01430 1.16944 0.86005 0.93935 0.99145 1.91435 1.58790 1.89273 1.72637 1.20880 1.00449 0.93493 0.98741 0.93671 0.93426 0.93210 0.91976 0.92978 0.94813 0.93251 0.92288 0.93375 0.91517 0.84781 0.85246 0.92049 0.92002 0.91610 0.91636 0.90464 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.15 -2.59 6.26 -26.73 -0.17 -2.76 16 3 C 0.15 2.92 5.69 -4.04 -0.02 2.89 16 4 N -0.59 -13.43 2.01 -174.60 -0.35 -13.78 16 5 C -0.36 -9.48 9.65 -15.06 -0.15 -9.62 16 6 H 0.06 1.65 8.06 -52.48 -0.42 1.23 16 7 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 8 N -0.90 -26.19 13.71 55.49 0.76 -25.43 16 9 Si 1.04 24.44 26.64 -169.99 -4.53 19.91 16 10 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -5.89 5.59 56.52 0.32 -5.57 16 13 C 0.18 3.78 3.91 -5.19 -0.02 3.76 16 14 C -0.09 -1.65 5.45 -104.61 -0.57 -2.22 16 15 C -0.07 -1.24 9.69 -39.59 -0.38 -1.62 16 16 C -0.18 -3.01 9.04 -39.45 -0.36 -3.37 16 17 C 0.08 1.31 6.69 -39.18 -0.26 1.05 16 18 O -0.32 -4.96 10.00 -19.61 -0.20 -5.16 16 19 C 0.05 0.62 5.46 37.16 0.20 0.83 16 20 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 21 C 0.06 1.06 7.31 -39.30 -0.29 0.77 16 22 F -0.14 -2.54 17.11 2.25 0.04 -2.50 16 23 C -0.12 -2.04 9.28 -39.54 -0.37 -2.41 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 29 H 0.03 0.62 7.52 -51.93 -0.39 0.22 16 30 H 0.05 1.01 8.00 -51.93 -0.42 0.60 16 31 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 32 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 33 H 0.07 1.46 4.46 -51.93 -0.23 1.23 16 34 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 35 H 0.13 1.80 6.30 -52.49 -0.33 1.47 16 36 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 37 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.13 2.11 7.87 -52.49 -0.41 1.70 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -29.12 340.26 -7.32 -36.44 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.45 Total: 0.71 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.72 Total: -15.32 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.41 Total: -39.21 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.53 Total: 19.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.12 -7.32 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278462531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.245 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds